| PRJNA376073: Transcriptome responses to GA3 (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SRX2577785 | Cucumis sativus | 13_3B | Shoot apices without GA3 treatment | 499.99 |
| SRX2577783 | Cucumis sativus | 13_3B | Shoot apices treated with GA3 for 6 h | 391.75 |
| SRX2577781 | Cucumis sativus | 13_3B | Shoot apices treated with GA3 for 12 h | 430.23 |
|
| PRJNA613788: Transcriptome response to sugar treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14419958 | Cucumis sativus | ZK | Non-pollinated fruit | 907.62 |
| SAMN14419952 | Cucumis sativus | ZK | Fruit at one day after anthesis treated with fructose | 665.4 |
| SAMN14419954 | Cucumis sativus | ZK | Fruit at one day after anthesis treated with glucose | 836.15 |
| SAMN14419956 | Cucumis sativus | ZK | Fruit at one day after anthesis treated with sucrose | 745.83 |
|
| PRJNA667293: Transcriptome profiling of lateral root development regulated by GA3 (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16365205 | Cucumis sativus | Daqingba | Roots of seedlings with mock treatment at 2 days after germination | 1113.88 |
| SAMN16365207 | Cucumis sativus | Daqingba | Roots of seedlings treated with 50 uM GA3 at 2 days after germination | 1049.86 |
| SAMN16365210 | Cucumis sativus | Daqingba | Roots of seedlings with mock treatment at 3 days after germination | 949.86 |
| SAMN16365213 | Cucumis sativus | Daqingba | Roots of seedlings treated with 50 uM GA3 at 3 days after germination | 873.31 |
| SAMN16365216 | Cucumis sativus | Daqingba | Roots of seedlings with mock treatment at 5 days after germination | 822.6 |
| SAMN16365219 | Cucumis sativus | Daqingba | Roots of seedlings treated with 50 uM GA3 at 5 days after germination | 757.61 |
|
| PRJNA782544: Transcriptome responses to ethrel (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN23383751 | Cucumis sativus | Xinchun No. 4 | Explants treated with 0.5 uM ethrel for 48 hours | 288.83 |
| SAMN23383748 | Cucumis sativus | Xinchun No. 4 | Explants treated with distilled water for 48 hours | 315.29 |
|
| PRJNA316747: Transcriptomes of cucumber roots inoculated by AMF (Rhizophagus irregularis) under low temperature (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04589924 | Cucumis sativus | Zhongnong No. 26 | Root of non-inoculated plant under normal temperature | 415.22 |
| SAMN04589926 | Cucumis sativus | Zhongnong No. 26 | Root of plant inoculated with AMF R. irregularis under normal temperature | 290.63 |
| SAMN04589925 | Cucumis sativus | Zhongnong No. 26 | Root of non-inoculated plant under low temperature | 409.23 |
| SAMN04589927 | Cucumis sativus | Zhongnong No. 26 | Root of plant inoculated with AMF R. irregularis under low temperature | 280.25 |
|
| PRJNA438923: Transcriptome responses to chilling stress (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08731966 | Cucumis sativus | Cu-01 | Leaves of untreated plants | 216 |
| SAMN08731973 | Cucumis sativus | Cu-01 | Leaves of plants exposed to an air temperature of 6℃ for 2 h | 216.37 |
| SAMN08731970 | Cucumis sativus | Cu-01 | Leaves of plants exposed to an air temperature of 6℃ for 6 h | 200.45 |
| SAMN08731967 | Cucumis sativus | Cu-01 | Leaves of plants exposed to an air temperature of 6℃ for 12 h | 194.05 |
|
| PRJNA701131: Transcriptome responses of grafted cucumber to cold stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17848873 | Cucumis sativus | Jinyou 35 | Leaves of cucumber grafted on pumpkin under normal temperature (25 ℃) | 359.44 |
| SAMN17848870 | Cucumis sativus | Jinyou 35 | Leaves of homografted cucumber under normal temperature (25 ℃) | 461.87 |
| SAMN17848879 | Cucumis sativus | Jinyou 35 | Leaves of cucumber grafted on pumpkin under cold temperature (5 ℃) | 198.1 |
| SAMN17848876 | Cucumis sativus | Jinyou 35 | Leaves of homografted cucumber under cold temperature (5 ℃) | 171.84 |
|
| PRJNA817708: Transcriptome responses to cold stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN26806305 | Cucumis sativus | CT90 | Leaf of tolerant line at 24h after cold treatment of 6 C | 535.85 |
| SAMN26806311 | Cucumis sativus | CT57 | Leaf of sensitive line at 24h after cold treatment of 6 C | 394.99 |
| SAMN26806308 | Cucumis sativus | CT90 | Root of tolerant line at 24h after cold treatment of 6 C | 495.21 |
| SAMN26806314 | Cucumis sativus | CT57 | Root of sensitive line at 24h after cold treatment of 6 C | 457.72 |
|
| PRJNA720243: Transcriptome response of grafted cucumber to drought stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18643059 | Cucumis sativus | EC1 | Leaf of homografted cucumber plant under control conditions | 1142.77 |
| SAMN18643060 | Cucumis sativus | EC1 | Leaf of homografted cucumber plant under drought stress | 732.51 |
| SAMN18643061 | Cucumis sativus | EC1 | Leaf of cucumber plant grafted onto Cucurbits moschata under control conditions | 820.32 |
| SAMN18643062 | Cucumis sativus | EC1 | Leaf of cucumber plant grafted onto Cucurbits moschata under drought stress | 704.33 |
|
| PRJEB7612: Transcriptome response to silicon treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMEA3105050 | Cucumis sativus | B10 | Leaves and stems of untreated plants | 258.59 |
| SAMEA3105054 | Cucumis sativus | B10 | Leaves and stems of plants under silicon treatment | 222.87 |
|
| PRJNA307279: Transcriptome profiles of grafted plants under Pi stress (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04457411 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants (with mature leaves removed) under +Pi for 24 h | 660.68 |
| SAMN04457412 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants (with mature leaves removed) under -Pi for 24 h | 682.46 |
| SAMN04457417 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants under +Pi for 24 h | 593.12 |
| SAMN04457418 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants under -Pi for 24 h | 583.28 |
| SAMN04457423 | Cucumis sativus | Chinese Long | Developing leaf of non-grafted cucumber plants under +Pi for 24 h | 622.55 |
| SAMN04457424 | Cucumis sativus | Chinese Long | Developing leaf of non-grafted cucumber plants under -Pi for 24 h | 630.18 |
| SAMN04457413 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants (with mature leaves removed) under +Pi for 24 h | 568.37 |
| SAMN04457414 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants (with mature leaves removed) under -Pi for 24 h | 609.18 |
| SAMN04457419 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants under +Pi for 24 h | 508.76 |
| SAMN04457420 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants under -Pi for 24 h | 548.48 |
| SAMN04457425 | Cucumis sativus | Chinese Long | Shoot apex of non-grafted cucumber plants under +Pi for 24 h | 568.3 |
| SAMN04457426 | Cucumis sativus | Chinese Long | Shoot apex of non-grafted cucumber plants under -Pi for 24 h | 557.79 |
| SAMN04457415 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants (with stock leaves removed) under +Pi for 24 h | 611.79 |
| SAMN04457416 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants (with stock leaves removed) under -Pi for 24 h | 637.63 |
| SAMN04457421 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants under +Pi for 24 h | 611.21 |
| SAMN04457422 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants under -Pi for 24 h | 566.82 |
| SAMN04457427 | Cucumis sativus | Chinese Long | Root of non-grafted cucumber plants under +Pi for 24 h | 508.46 |
| SAMN04457428 | Cucumis sativus | Chinese Long | Root of non-grafted cucumber plants under -Pi for 24 h | 545.86 |
| SAMN04457397 | Cucumis sativus | Chinese long | Lamina under +Pi for 12 h | 137.34 |
| SAMN04457398 | Cucumis sativus | Chinese long | Lamina under -Pi for 12 h | 140.6 |
| SAMN04457399 | Cucumis sativus | Chinese long | Major vein under +Pi for 12 h | 178.88 |
| SAMN04457400 | Cucumis sativus | Chinese long | Major vein under -Pi for 12 h | 187.63 |
| SAMN04457401 | Cucumis sativus | Chinese long | Petiole vascular tissue under +Pi for 12 h | 235.3 |
| SAMN04457402 | Cucumis sativus | Chinese long | Petiole vascular tissue under -Pi for 12 h | 187.28 |
| SAMN04457403 | Cucumis sativus | Chinese long | Phloem sap under +Pi for 12 h | 203.01 |
| SAMN04457404 | Cucumis sativus | Chinese long | Phloem sap under -Pi for 12 h | 197.93 |
| SAMN04457405 | Cucumis sativus | Chinese long | Internode vascular tissue under +Pi for 12 h | 242.42 |
| SAMN04457406 | Cucumis sativus | Chinese long | Internode vascular tissue under -Pi for 12 h | 232.23 |
| SAMN04457407 | Cucumis sativus | Chinese long | Shoot apex under +Pi for 12 h | 584.74 |
| SAMN04457408 | Cucumis sativus | Chinese long | Shoot apex under -Pi for 12 h | 501.41 |
| SAMN04457409 | Cucumis sativus | Chinese long | Root under +Pi for 12 h | 264.48 |
| SAMN04457410 | Cucumis sativus | Chinese long | Root under -Pi for 12 h | 265.35 |
|
| PRJNA523714: Transcriptome profiling of C. campestris-connected cucumber plant clusters under nitrogen-depleted condition (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10987397 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-replete condition (both cucumber plants supplied with 10 mM KNO3) after 0 hour | 245.78 |
| SAMN10987421 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 2 hours | 317.39 |
| SAMN10987445 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 8 hours | 308.8 |
| SAMN10987469 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 48 hours | 245.54 |
| SAMN10987406 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 2 hours | 252.93 |
| SAMN10987430 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 8 hours | 360.99 |
| SAMN10987454 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 48 hours | 260.08 |
| SAMN10987415 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 2 hours | 281.58 |
| SAMN10987439 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 8 hours | 487.08 |
| SAMN10987463 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 48 hours | 357.81 |
| SAMN10987400 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-replete condition (both cucumber plants supplied with 10 mM KNO3) after 0 hour | 458.35 |
| SAMN10987424 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 2 hours | 529.62 |
| SAMN10987448 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 8 hours | 356.54 |
| SAMN10987472 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 48 hours | 367.73 |
| SAMN10987409 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 2 hours | 477.37 |
| SAMN10987433 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 8 hours | 449.48 |
| SAMN10987457 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 48 hours | 476.1 |
| SAMN10987418 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 2 hours | 399.69 |
| SAMN10987442 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 8 hours | 456.7 |
| SAMN10987466 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 48 hours | 501.17 |
|
| PRJNA765376: Transcriptome responses to Sulfur (S) fumigation (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN21555952 | Cucumis sativus | Chinese Long | Non sulfur-fumigated ovaries at 0 days post pollination | 353.62 |
| SAMN21555953 | Cucumis sativus | Chinese Long | Sulfur-fumigated ovaries at 0 days post pollination | 457.16 |
| SAMN21555954 | Cucumis sativus | Chinese Long | Non sulfur-fumigated commercial fruits at 12 days post pollination | 258.75 |
| SAMN21555955 | Cucumis sativus | Chinese Long | Sulfur-fumigated commercial fruits at 12 days post pollination | 285.17 |
| SAMN21555950 | Cucumis sativus | Chinese Long | Non sulfur-fumigated mature leaves | 236.91 |
| SAMN21555951 | Cucumis sativus | Chinese Long | Sulfur-fumigated mature leaves | 262.29 |
| SAMN21555948 | Cucumis sativus | Chinese Long | Non sulfur-fumigated young leaves | 205 |
| SAMN21555949 | Cucumis sativus | Chinese Long | Sulfur-fumigated young leaves | 281.24 |
|
| PRJNA634519: Transcriptome response to high temperature stress (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14998224 | Cucumis sativus | Chinese Long | Leaves of untreated plants | 842.87 |
| SAMN14998221 | Cucumis sativus | Chinese Long | Leaves of plants under heat treatment at 42℃ for 3 hours | 496.18 |
| SAMN14998218 | Cucumis sativus | Chinese Long | Leaves of plants under heat treatment at 42℃ for 6 hours | 422.64 |
|
| PRJNA748460: Transcriptome profiling of male flower development under heat stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN20335859 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 0-3 mm under normal conditions | 298.1 |
| SAMN20335871 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 0-3 mm under heat stress | 314.82 |
| SAMN20335862 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 3-6 mm under normal conditions | 229.39 |
| SAMN20335874 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 3-6 mm under heat stress | 290.18 |
| SAMN20335865 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 6-9 mm under normal conditions | 147.38 |
| SAMN20335877 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 6-9 mm under heat stress | 230.71 |
| SAMN20335868 | Cucumis sativus | B80 | Anthers of male flowers with lengths of >9 mm under normal conditions | 73.23 |
| SAMN20335880 | Cucumis sativus | B80 | Anthers of male flowers with lengths of >9 mm under heat stress | 95.68 |
|
| PRJNA380322: Transcriptome responses to temperature and photoperiod (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06640661 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under low temperature, short day | 515.53 |
| SAMN06640663 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under high temperature, short day | 406.35 |
| SAMN06640662 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under low temperature, long day | 502.58 |
| SAMN06640664 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under high temperature, long day | 449.19 |
|
| PRJNA475903: Transcriptome responses to photoperiod treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09405568 | Cucumis sativus | SWCC8 | Leaves of plant at 0 day of photoperiod treatment | 340.62 |
| SAMN09405577 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 7, 14 and 21 days of equal-day treatment | 535 |
| SAMN09405571 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 7, 14 and 21 days of short-day treatment | 547.67 |
| SAMN09405580 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 37 and 44 days of equal-day treatment | 414.7 |
| SAMN09405574 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 37 and 44 days of short-day treatment | 586.99 |
| SAMN09405583 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 52 and 59 days of equal-day treatment | 341.52 |
|
| PRJNA476021: Transcriptome responses to different ratios of blue and red light (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09425165 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 5 days | 1074.2 |
| SAMN09425169 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 10 days | 755.81 |
| SAMN09425173 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 15 days | 683.9 |
| SAMN09425167 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 5 days | 892.71 |
| SAMN09425171 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 10 days | 578.71 |
| SAMN09425175 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 15 days | 480.69 |
|
| PRJNA782229: Transcriptome profiling of fruit development under different photoperiod treatment (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SRX13518806 | Cucumis sativus | CC3 | Fruits at 10 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 385.98 |
| SRX13518810 | Cucumis sativus | CC3 | Fruits at 10 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 375.63 |
| SRX13518829 | Cucumis sativus | CC3 | Fruits at 20 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 316.23 |
| SRX13518813 | Cucumis sativus | CC3 | Fruits at 20 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 353.54 |
| SRX13518850 | Cucumis sativus | CC3 | Fruits at 30 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 268.47 |
| SRX13518816 | Cucumis sativus | CC3 | Fruits at 30 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 451.03 |
| SRX13518808 | Cucumis sativus | CC3 | Fruits at 40 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 207.2 |
| SRX13518820 | Cucumis sativus | CC3 | Fruits at 40 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 324.22 |
| SRX13518823 | Cucumis sativus | SWCC8 | Fruits at 10 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 206.57 |
| SRX13518836 | Cucumis sativus | SWCC8 | Fruits at 10 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 537.25 |
| SRX13518826 | Cucumis sativus | SWCC8 | Fruits at 20 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 388.2 |
| SRX13518839 | Cucumis sativus | SWCC8 | Fruits at 20 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 445.32 |
| SRX13518830 | Cucumis sativus | SWCC8 | Fruits at 30 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 219 |
| SRX13518843 | Cucumis sativus | SWCC8 | Fruits at 30 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 289.58 |
| SRX13518833 | Cucumis sativus | SWCC8 | Fruits at 40 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 185.01 |
| SRX13518846 | Cucumis sativus | SWCC8 | Fruits at 40 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 210.51 |
|
| PRJNA437579: Root transcriptome responses to salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08668092 | Cucumis sativus | Jinchun No. 2 | Fresh root apexes (0-2 mm from the root tip) from seedlings without NaCl treatment | 666.33 |
| SAMN08668098 | Cucumis sativus | Jinchun No. 2 | Fresh root apexes (0-2 mm from the root tip) from seedlings after 24 hours treatment with 75 mM NaCl | 273.02 |
|
| PRJNA477930: Transcriptome responses to salt stress and silicon treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09487602 | Cucumis sativus | JinYou 1 | Leaves of untreated plants | 365.4 |
| SAMN09487597 | Cucumis sativus | JinYou 1 | Leaves of plants treated with silicon for three days | 400.37 |
| SAMN09487599 | Cucumis sativus | JinYou 1 | Leaves of plants treated with salt for three days | 372.24 |
| SAMN09487594 | Cucumis sativus | JinYou 1 | Leaves of plants treated with salt and silicon for three days | 389.14 |
|
| PRJNA511946: Transcriptome response to salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10653474 | Cucumis sativus | JinYou 1 | Roots of non-stressed plants | 465.35 |
| SAMN10653467 | Cucumis sativus | JinYou 1 | Roots of plants under salt stress for 3 days | 552.31 |
|
| PRJNA524275: Transcriptome profiling of C. campestris-connected cucumber plant clusters under salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11020240 | Cucumis sativus | Jinyou 35 | Leaves, both cucumber plants were mock treated for 12/24 h | 262.36 |
| SAMN11020243 | Cucumis sativus | Jinyou 35 | Leaves of plant treated with 50 mM NaCl for 12 h, while the other was mock treated | 159.62 |
| SAMN11020246 | Cucumis sativus | Jinyou 35 | Leaves of mock treated plant, while the other was treated with 50 mM NaCl for 12 h | 221.18 |
| SAMN11020249 | Cucumis sativus | Jinyou 35 | Leaves, both cucumber plants treated with 50 mM NaCl for 12 h | 161.38 |
| SAMN11020252 | Cucumis sativus | Jinyou 35 | Leaves of plant treated with 50 mM NaCl for 24 h, while the other was mock treated | 160.77 |
| SAMN11020255 | Cucumis sativus | Jinyou 35 | Leaves of mock treated plant, while the other was treated with 50 mM NaCl for 24 h | 195.54 |
| SAMN11020258 | Cucumis sativus | Jinyou 35 | Leaves, both cucumber plants treated with 50 mM NaCl for 24 h | 174.12 |
| SAMN11020261 | Cucumis sativus | Jinyou 35 | Roots, both cucumber plants were mock treated for 12/24 h | 398.66 |
| SAMN11020264 | Cucumis sativus | Jinyou 35 | Roots of plant treated with 50 mM NaCl for 12 h, while the other was mock treated | 353.03 |
| SAMN11020267 | Cucumis sativus | Jinyou 35 | Roots of mock treated plant, while the other was treated with 50 mM NaCl for 12 h | 344.47 |
| SAMN11020270 | Cucumis sativus | Jinyou 35 | Roots, both cucumber plants treated with 50 mM NaCl for 12 h | 389.01 |
| SAMN11020273 | Cucumis sativus | Jinyou 35 | Roots of plant treated with 50 mM NaCl for 24 h, while the other was mock treated | 413.84 |
| SAMN11020276 | Cucumis sativus | Jinyou 35 | Roots of mock treated plant, while the other was treated with 50 mM NaCl for 24 h | 365.36 |
| SAMN11020279 | Cucumis sativus | Jinyou 35 | Roots, both cucumber plants treated with 50 mM NaCl for 24 h | 381.21 |
|
| PRJNA563457: Transcriptome responses to H2S-regulated salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12674486 | Cucumis sativus | Chunxiaqiuwang | Leaves of untreated plants | 148.81 |
| SAMN12674489 | Cucumis sativus | Chunxiaqiuwang | Leaves of plants treated with 200 mM NaCl for 7 days | 175.08 |
| SAMN12674492 | Cucumis sativus | Chunxiaqiuwang | Leaves of plants treated with 200 mM NaCl + 15.0 uM NaHS for 7 days | 192.28 |
|
| PRJNA678740: Transcriptome responses to long-term waterlogging (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16811424 | Cucumis sativus | DH2 | Roots of tolerant plants untreated, cultivated in optimal conditions | 222.79 |
| SAMN16811567 | Cucumis sativus | DH2 | Roots of tolerant plants after 7 days of waterlogging and 14 days of recovery period | 412.94 |
| SAMN16811530 | Cucumis sativus | DH2 | Roots of non-primed tolerant plants, waterlogged for 7 days only once | 218.02 |
| SAMN16811572 | Cucumis sativus | DH2 | Roots of primed tolerant plants; waterlogged twice after 14 days of recovery period | 162.28 |
| SAMN16811671 | Cucumis sativus | DH4 | Roots of sensitive plants untreated, cultivated in optimal conditions | 174.7 |
| SAMN16811697 | Cucumis sativus | DH4 | Roots of sensitive plants after 7 days of waterlogging and 14 days of recovery period | 294.3 |
| SAMN16811676 | Cucumis sativus | DH4 | Roots of non-primed sensitive plants; waterlogged for 7 days only once | 170.85 |
| SAMN16811714 | Cucumis sativus | DH4 | Roots of primed sensitive plants; waterlogged twice after 14 days of recovery period | 139.85 |
|
| PRJNA799460: Transcriptome responses of hypocotyl to different waterlogging stress treatments (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN25172608 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber under control conditions for 48 hours | 184.24 |
| SAMN25172611 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber under waterlogging for 48 hours | 295.47 |
| SAMN25172614 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber treated with 10uM ACC waterlogging for 48 hours | 271.51 |
| SAMN25172617 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber treated with 10uM AOA waterlogging for 48 hours | 306.58 |
|
| PRJNA844418: Transcriptome responses of different tissues of hypocotyl to waterlogging (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN28817254 | Cucumis sativus | Zaoer-N | Hypocotyl epidermis of cucumber under control conditions for 48 hours | 167.4 |
| SAMN28817245 | Cucumis sativus | Zaoer-N | Hypocotyl epidermis of cucumber under waterlogging stress for 48 hours | 198 |
| SAMN28817257 | Cucumis sativus | Zaoer-N | Hypocotyl vascular bundles of cucumber under control conditions for 48 hours | 155.29 |
| SAMN28817248 | Cucumis sativus | Zaoer-N | Hypocotyl vascular bundle of cucumber under waterlogging stress for 48 hours | 190.8 |
| SAMN28817260 | Cucumis sativus | Zaoer-N | Hypocotyl basal tissue of cucumber under control conditions for 48 hours | 234.13 |
| SAMN28817251 | Cucumis sativus | Zaoer-N | Hypocotyl basic tissue of cucumber under waterlogging stress for 48 hours | 191.88 |
|
| PRJNA563186: Transcriptome responses to Alternaria cucumerina (alternaria leaf spot) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12670099 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 2 days post mock treatment | 395.86 |
| SAMN12670096 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 2 days post inoculation with Alternaria cucumerina | 268.12 |
| SAMN12670105 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 6 days post mock treatment | 361.05 |
| SAMN12670102 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 6 days post inoculation with Alternaria cucumerina | 352.9 |
| SAMN12670111 | Cucumis sativus | D1322 | Leaf of resistant line at 2 days post mock treatment | 462.74 |
| SAMN12670108 | Cucumis sativus | D1322 | Leaf of resistant line at 2 days post inoculation with Alternaria cucumerina | 343.81 |
| SAMN12670117 | Cucumis sativus | D1322 | Leaf of resistant line at 6 days post mock treatment | 336.02 |
| SAMN12670114 | Cucumis sativus | D1322 | Leaf of resistant line at 6 days post inoculation with Alternaria cucumerina | 538.44 |
|
| PRJNA388584: Transcriptome responses to downy mildew (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN07179433 | Cucumis sativus | PI 197088 | Leaf of resistant line at 0 h post inoculation with Pseudoperonospora cubensis | 187.69 |
| SAMN07179434 | Cucumis sativus | PI 197088 | Leaf of resistant line at 6 h post inoculation with Pseudoperonospora cubensis | 189.5 |
| SAMN07179435 | Cucumis sativus | PI 197088 | Leaf of resistant line at 24 h post inoculation with Pseudoperonospora cubensis | 206.01 |
|
| PRJNA544259: Transcriptome responses to downy mildew (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11831000 | Cucumis sativus | HS279 | Leaves of plants at three days post mock treatment | 152.27 |
| SAMN11831003 | Cucumis sativus | HS279 | Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew) | 112.45 |
| SAMN11831006 | Cucumis sativus | NIL DM4.1.2 | Leaves of plants at three days post mock treatment | 180.36 |
| SAMN11831009 | Cucumis sativus | NIL DM4.1.2 | Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew) | 142.16 |
| SAMN11831012 | Cucumis sativus | NIL DM4.1.3 | Leaves of plants at three days post mock treatment | 133.64 |
| SAMN11831015 | Cucumis sativus | NIL DM4.1.3 | Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew) | 112.86 |
|
| PRJNA776553: Garlic volatile diallyl disulfide (DADS) induced cucumber resistance to downy mildew (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN22799462 | Cucumis sativus | CCMC | Leaf of plant uninoculated with P. cubensis and not treated with DADS | 164.3 |
| SAMN22799464 | Cucumis sativus | CCMC | Leaf of plant uninoculated with P. cubensis and treated with DADS | 184.39 |
| SAMN22799450 | Cucumis sativus | CCMC | Leaf of plant at 4 h post inoculation of P. cubensis and not treated with DADS | 408.4 |
| SAMN22799452 | Cucumis sativus | CCMC | Leaf of plant at 4 h post inoculation of P. cubensis and treated with DADS | 363.94 |
| SAMN22799454 | Cucumis sativus | CCMC | Leaf of plant at 24 h post inoculation of P. cubensis and not treated with DADS | 297.01 |
| SAMN22799456 | Cucumis sativus | CCMC | Leaf of plant at 24 h post inoculation of P. cubensis and treated with DADS | 345.82 |
| SAMN22799458 | Cucumis sativus | CCMC | Leaf of plant at 48 h post inoculation of P. cubensis and not treated with DADS | 258.86 |
| SAMN22799460 | Cucumis sativus | CCMC | Leaf of plant at 48 h post inoculation of P. cubensis and treated with DADS | 477.67 |
|
| PRJNA472169: Transcriptome responses to Fusarium oxysporum (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09228081 | Cucumis sativus | Rijiecheng | Roots of plants at 0 h post inoculation with Foc | 333.94 |
| SAMN09228082 | Cucumis sativus | Rijiecheng | Roots of plants at 24 h post inoculation with Foc | 263.82 |
| SAMN09228083 | Cucumis sativus | Rijiecheng | Roots of plants at 48 h post inoculation with Foc | 307.97 |
| SAMN09228084 | Cucumis sativus | Rijiecheng | Roots of plants at 96 h post inoculation with Foc | 423.39 |
| SAMN09228085 | Cucumis sativus | Rijiecheng | Roots of plants at 192 h post inoculation with Foc | 317.41 |
|
| PRJNA484083: Transcriptome profiling of cucumber Fusarium wilt resistance induced by intercropping with celery (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09759444 | Cucumis sativus | Fuyang | Roots of monocultured resistant plants inoculated with Fusarium oxysporum | 422.64 |
| SAMN09759446 | Cucumis sativus | Fuyang | Roots of resistant plants intercropped with celery and inoculated with Fusarium oxysporum | 392.3 |
| SAMN09759443 | Cucumis sativus | Tangyan | Roots of monocultured susceptible plants inoculated with Fusarium oxysporum | 284.99 |
| SAMN09759445 | Cucumis sativus | Tangyan | Roots of susceptible plants intercropped with celery and inoculated with Fusarium oxysporum | 373.71 |
|
| PRJNA750577: Transcriptome responses of CsRbohB-RNAi lines to Fusarium oxysporum (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN20474027 | Cucumis sativus | CCMC | Roots of control plants at 48 hours | 480.07 |
| SAMN20474030 | Cucumis sativus | CCMC | Roots of plants at 48 hours post inoculation with Foc | 389.24 |
| SAMN20474033 | Cucumis sativus | CsRbohB-RNAi | Roots of control RNAi plants at 48 hours | 461.27 |
| SAMN20474036 | Cucumis sativus | CsRbohB-RNAi | Roots of RNAi plants at 48 hours post inoculation with Foc | 381.33 |
|
| PRJNA419665: Transcriptome responses to nematode infection (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08095139 | Cucumis sativus | CC3 | Roots of susceptible lines at 0 day post inoculation with Meloidogyne incognita | 634.84 |
| SAMN08095141 | Cucumis sativus | CC3 | Roots of susceptible lines at 1 day post inoculation with Meloidogyne incognita | 433.9 |
| SAMN08095143 | Cucumis sativus | CC3 | Roots of susceptible lines at 2 days post inoculation with Meloidogyne incognita | 493.92 |
| SAMN08095152 | Cucumis sativus | CC3 | Roots of susceptible lines at 3 days post inoculation with Meloidogyne incognita | 463.81 |
| SAMN08095163 | Cucumis sativus | IL10-1 | Roots of resistant lines at 0 day post inoculation with Meloidogyne incognita | 495.67 |
| SAMN08095169 | Cucumis sativus | IL10-1 | Roots of resistant lines at 1 day post inoculation with Meloidogyne incognita | 609.45 |
| SAMN08095179 | Cucumis sativus | IL10-1 | Roots of resistant lines at 2 days post inoculation with Meloidogyne incognita | 544.17 |
| SAMN08095185 | Cucumis sativus | IL10-1 | Roots of resistant lines at 3 days post inoculation with Meloidogyne incognita | 466.3 |
|
| PRJNA445328: Transcriptome responses to biocontrol agent Trichoderma longibrachiatum (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08779020 | Cucumis sativus | Chinese Long | Leaves from non-inoculated (with Trichoderma) and non-challenged (with B. cinerea) plants | 207.19 |
| SAMN08779324 | Cucumis sativus | Chinese Long | Leaves from inoculated (with Trichoderma) and non-challenged (with B. cinerea) plants | 167.02 |
| SAMN08394921 | Cucumis sativus | Chinese Long | Leaves from inoculated (with Trichoderma) and challenged (with B. cinerea) plants | 155.68 |
|
| PRJNA285071: Transcriptome responses to Pseudoperonospora cubensis (downy mildew) (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN03737503 | Cucumis sativus | Vlaspik | Leaf of susceptible line under mock treatment | 254.72 |
| SAMN03734820 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 1 day post inoculation with Pseudoperonospora cubensis | 264.63 |
| SAMN03737532 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 2 days post inoculation with Pseudoperonospora cubensis | 454.29 |
| SAMN03737500 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 3 days post inoculation with Pseudoperonospora cubensis | 251.82 |
| SAMN03737501 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 4 days post inoculation with Pseudoperonospora cubensis | 197.11 |
| SAMN03737502 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 6 days post inoculation with Pseudoperonospora cubensis | 148.82 |
| SAMN03737504 | Cucumis sativus | PI 197088 | Leaf of resistant line under mock treatment | 234 |
| SAMN03737508 | Cucumis sativus | PI 197088 | Leaf of resistant line at 1 day post inoculation with Pseudoperonospora cubensis | 284.69 |
| SAMN03737509 | Cucumis sativus | PI 197088 | Leaf of resistant line at 2 days post inoculation with Pseudoperonospora cubensis | 263.4 |
| SAMN03737510 | Cucumis sativus | PI 197088 | Leaf of resistant line at 3 days post inoculation with Pseudoperonospora cubensis | 201.13 |
| SAMN03737511 | Cucumis sativus | PI 197088 | Leaf of resistant line at 4 days post inoculation with Pseudoperonospora cubensis | 187.75 |
| SAMN03737512 | Cucumis sativus | PI 197088 | Leaf of resistant line at 6 days post inoculation with Pseudoperonospora cubensis | 164.74 |
|
| PRJNA292785: Transcriptome response by physcion and chrysophanol against cucumber powdery mildew (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN03988531 | Cucumis sativus | Changchunmici | Leaves of plants mock treated before inoculation with Sphaerotheca fuliginea for 3 days | 240.43 |
| SAMN03988533 | Cucumis sativus | Changchunmici | Leaves of plants treated with chrysophano before inoculation with Sphaerotheca fuliginea for 3 days | 256.23 |
| SAMN03988535 | Cucumis sativus | Changchunmici | Leaves of plants treated with physcion before inoculation with Sphaerotheca fuliginea for 3 days | 251.31 |
| SAMN03988538 | Cucumis sativus | Changchunmici | Leaves of plants treated with physcion and chrysophano before inoculation with Sphaerotheca fuliginea for 3 days | 275.31 |
|
| PRJNA321023: Transcriptome responses to powdery mildew disease (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04962346 | Cucumis sativus | D8 | Leaves of susceptible plants at 0 h post inoculation with powdery mildew fungus | 360.73 |
| SAMN04962349 | Cucumis sativus | D8 | Leaves of susceptible plants at 48 h post inoculation with powdery mildew fungus | 327.42 |
| SAMN04962345 | Cucumis sativus | SSL508-28 | Leaves of resistant plants at 0 h post inoculation with powdery mildew fungus | 333.31 |
| SAMN04962354 | Cucumis sativus | SSL508-28 | Leaves of resistant plants at 48 h post inoculation with powdery mildew fungus | 433.47 |
|
| PRJNA603869: Transcriptome responses to powdery mildew disease (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN13943385 | Cucumis sativus | Q10 | Leaf of susceptible line at 24 h post mock treatment | 322.13 |
| SAMN13943392 | Cucumis sativus | Q10 | Leaf of susceptible line at 24 h post inoculation with powdery mildew fungus | 228.29 |
| SAMN13943388 | Cucumis sativus | Q10 | Leaf of susceptible line at 48 h post mock treatment | 204.14 |
| SAMN13943395 | Cucumis sativus | Q10 | Leaf of susceptible line at 48 h post inoculation with powdery mildew fungus | 249.45 |
| SAMN13943398 | Cucumis sativus | XY09-118 | Leaf of resistant line at 24 h post mock treatment | 259.43 |
| SAMN13943405 | Cucumis sativus | XY09-118 | Leaf of resistant line at 24 h post inoculation with powdery mildew fungus | 249.54 |
| SAMN13943402 | Cucumis sativus | XY09-118 | Leaf of resistant line at 48 h post mock treatment | 262.43 |
| SAMN13943408 | Cucumis sativus | XY09-118 | Leaf of resistant line at 48 h post inoculation with powdery mildew fungus | 225.21 |
|
| PRJNA816625: Transcriptome response to Podosphaera xanthii (powdery mildew) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN26686559 | Cucumis sativus | B21-a-2-2-2 | Cotyledon of susceptible line at 0 h post inoculation with Podosphaera xanthii | 176.33 |
| SAMN26686562 | Cucumis sativus | B21-a-2-1-2 | Cotyledon of resistant line at 0 h post inoculation with Podosphaera xanthii | 209.74 |
| SAMN26686565 | Cucumis sativus | B21-a-2-2-2 | Cotyledon of susceptible line at 6 h post inoculation with Podosphaera xanthii | 120.95 |
| SAMN26686568 | Cucumis sativus | B21-a-2-1-2 | Cotyledon of resistant line at 6 h post inoculation with Podosphaera xanthii | 163.3 |
|
| PRJNA704621: Transcriptome responses to Pseudomonas syringae pv. lachrymans (Psl) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18049944 | Cucumis sativus | B10 | Leaf of susceptible line without Psl 814/98 inoculation | 156.33 |
| SAMN18050103 | Cucumis sativus | B10 | Leaf of susceptible line at 1 day post inoculation with Psl 814/98 | 212.13 |
| SAMN18050492 | Cucumis sativus | B10 | Leaf of susceptible line at 3 days post inoculation with Psl 814/98 | 261.99 |
| SAMN18050892 | Cucumis sativus | Gy14 | Leaf of resistant line without Psl 814/98 inoculation | 135.82 |
| SAMN18051058 | Cucumis sativus | Gy14 | Leaf of resistant line at 1 day post inoculation with Psl 814/98 | 203.1 |
| SAMN18051198 | Cucumis sativus | Gy14 | Leaf of resistant line at 3 days post inoculation with Psl 814/98 | 253.72 |
|
| PRJNA345040: Transcriptomes of peels from fruit differing in age-related resistance to Phytophthora capsici (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN05856085 | Cucumis sativus | Vlaspik | Fruit peel collected at 8 days post pollination (susceptible age) | 212.09 |
| SAMN05856088 | Cucumis sativus | Vlaspik | Fruit peel collected at 16 days post pollination (resistant age) | 220.1 |
| SAMN05856091 | Cucumis sativus | Gy14 | Fruit peel collected at 8 days post pollination (susceptible age) | 247.43 |
| SAMN05856094 | Cucumis sativus | Gy14 | Fruit peel collected at 16 days post pollination (susceptible age) | 220.63 |
|
| PRJNA575868: Transcriptomes of fruit peel in response to Phytophthora capsici (fruit rot) (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12912830 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 0 h (Experiment 1) | 234.69 |
| SAMN12912831 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 1) | 214.7 |
| SAMN12912832 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 1) | 348.8 |
| SAMN12912833 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 48 h (Experiment 1) | 196.58 |
| SAMN12912838 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 0 h (Experiment 2) | 271.1 |
| SAMN12912839 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 2 h (Experiment 2) | 259.83 |
| SAMN12912852 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 2 h (Experiment 2) | 239.4 |
| SAMN12912840 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 4 h (Experiment 2) | 234.69 |
| SAMN12912853 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 2) | 279.18 |
| SAMN12912841 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 8 h (Experiment 2) | 248.73 |
| SAMN12912854 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 8 h (Experiment 2) | 301.56 |
| SAMN12912842 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 12 h (Experiment 2) | 285.17 |
| SAMN12912855 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 12 h (Experiment 2) | 341.19 |
| SAMN12912843 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 18 h (Experiment 2) | 214.94 |
| SAMN12912856 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 18 h (Experiment 2) | 369.72 |
| SAMN12912844 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 24 h (Experiment 2) | 245.89 |
| SAMN12912857 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 2) | 365.99 |
| SAMN12912834 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 0 h (Experiment 1) | 323.45 |
| SAMN12912835 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 1) | 285.98 |
| SAMN12912836 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 1) | 287.74 |
| SAMN12912837 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 48 h (Experiment 1) | 259.23 |
| SAMN12912845 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 0 h (Experiment 2) | 245.11 |
| SAMN12912846 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 2 h (Experiment 2) | 267.79 |
| SAMN12912858 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 2 h (Experiment 2) | 260.06 |
| SAMN12912847 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 4 h (Experiment 2) | 242.76 |
| SAMN12912859 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 2) | 299.96 |
| SAMN12912848 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 8 h (Experiment 2) | 273.56 |
| SAMN12912860 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 8 h (Experiment 2) | 381.67 |
| SAMN12912849 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 12 h (Experiment 2) | 284.69 |
| SAMN12912861 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 12 h (Experiment 2) | 482.85 |
| SAMN12912850 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 18 h (Experiment 2) | 279.85 |
| SAMN12912862 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 18 h (Experiment 2) | 406.96 |
| SAMN12912851 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 24 h (Experiment 2) | 308.53 |
| SAMN12912863 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 2) | 345.01 |
|
| PRJNA646644: Transcriptome responses to cucumber green mottle mosaic virus (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN15548822 | Cucumis sativus | 229 | Leaf of healthy control, 3 days | 144.42 |
| SAMN15548823 | Cucumis sativus | 229 | Leaf of plant at 3 days post inoculation with cucumber green mottle mosaic virus | 371.49 |
| SAMN15548824 | Cucumis sativus | 229 | Leaf of healthy control, 20 days | 138.46 |
| SAMN15548825 | Cucumis sativus | 229 | Leaf of plant at 20 days post inoculation with cucumber green mottle mosaic virus | 304.61 |
|
| PRJNA701150: Transcriptome responses to cucumber green mottle mosaic virus (CGMMV) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17849263 | Cucumis sativus | KS | Leaves of healthy plants | 798.73 |
| SAMN17849283 | Cucumis sativus | KS | Bright yellow islands from CGMMV-infected leaves exhibiting early post-recovery stage symptoms | 465.76 |
| SAMN17849285 | Cucumis sativus | KS | Dark green islands from CGMMV-infected leaves exhibiting early post-recovery stage symptoms | 559.07 |
| SAMN17849284 | Cucumis sativus | KS | Bright yellow islands from CGMMV-infected leaves exhibiting late post-recovery stage symptoms | 496.95 |
| SAMN17849286 | Cucumis sativus | KS | Dark green islands from CGMMV-infected leaves exhibiting late post-recovery stage symptoms | 359.64 |
|
| PRJNA837466: Transcriptome response to Prunus necrotic ringspot virus (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN28204068 | Cucumis sativus | NA | Leaf of cucumber seedlings at 12 days of mock treatment | 218.07 |
| SAMN28204071 | Cucumis sativus | NA | Leaf of cucumber seedlings at 12 days post-inoculation with Prunus necrotic ringspot virus | 260.59 |
|
| PRJNA307098: Transcriptome profiling of corolla opening (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04372266 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 1 day after labeling | 710.73 |
| SAMN04372269 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 3 days after labeling | 366.89 |
| SAMN04372272 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 4 days after labeling | 150.92 |
| SAMN04372275 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 5 days after labeling | 262.09 |
| SAMN04372278 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 1 day after labeling | 772.44 |
| SAMN04372281 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 3 days after labeling | 641.49 |
| SAMN04372284 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 4 days after labeling | 476.53 |
| SAMN04372287 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 5 days after labeling | 420.4 |
| SAMN04372291 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 7 days after labeling | 242.38 |
| SAMN04372294 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 8 days after labeling | 116.42 |
| SAMN04372289 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 9 days after labeling | 231.14 |
|
| PRJNA783663: Time-course transcriptome of multicellular trichomes (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN23441956 | Cucumis sativus | 3542 | Cotyledon at 18 hours after seed soaking | 1789.01 |
| SAMN23441959 | Cucumis sativus | 3542 | Cotyledon at 36 hours after seed soaking | 1019.12 |
| SAMN23441962 | Cucumis sativus | 3542 | Cotyledon at 60 hours after seed soaking | 827.17 |
| SAMN23441965 | Cucumis sativus | 3542 | Cotyledon at 72 hours after seed soaking | 750.09 |
| SAMN23441968 | Cucumis sativus | 3542 | Cotyledon at 96 hours after seed soaking | 332.3 |
|
| PRJNA258122: Transcriptomes of early fruits (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN02988317 | Cucumis sativus | 408 | Early fruits of about 2-4cm | 511.2 |
| SAMN02988319 | Cucumis sativus | 409 | Early fruits of about 2-4cm | 275.89 |
|
| PRJNA381300: Transcriptome profiling of fruits and leaves (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06673860 | Cucumis sativus | Chinese Long | Leaf | 778.58 |
| SAMN06673861 | Cucumis sativus | Chinese Long | Fruit flesh at 10 days post anthesis | 386.75 |
| SAMN06673862 | Cucumis sativus | Chinese Long | Fruit flesh at 20 days post anthesis | 381.12 |
| SAMN06673863 | Cucumis sativus | Chinese Long | Fruit flesh at 30 days post anthesis | 290.97 |
| SAMN06673864 | Cucumis sativus | Chinese Long | Fruit flesh at 40 days post anthesis | 160.75 |
| SAMN06673866 | Cucumis sativus | Chinese Long | Fruit flesh at 40 days post anthesis, treated with ethylene for 1.5 h | 292.61 |
|
| PRJNA448682: Transcriptome profiling of fruit development (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08862945 | Cucumis sativus | YanBai | Flesh at 3 days after self-pollination | 493.63 |
| SAMN08862951 | Cucumis sativus | YanBai | Flesh at 6 days after self-pollination | 558.27 |
| SAMN08862949 | Cucumis sativus | YanBai | Flesh at 9 days after self-pollination | 367.08 |
| SAMN08862946 | Cucumis sativus | YanBai | Peel at 3 days after self-pollination | 609.98 |
| SAMN08862944 | Cucumis sativus | YanBai | Peel at 6 days after self-pollination | 624.05 |
| SAMN08862950 | Cucumis sativus | YanBai | Peel at 9 days after self-pollination | 305.32 |
|
| PRJNA517913: Transcriptomes of fruits in lines with different carpel numbers (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10847189 | Cucumis sativus | 32X | Fruits at anthesis (carpel number=3) | 726.68 |
| SAMN10847186 | Cucumis sativus | GFC | Fruits at anthesis (carpel number=5) | 787.15 |
|
| PRJNA558838: Transcriptome profiling of fruit development (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12500541 | Cucumis sativus | Gy14 | Fruit peel at 8 days post pollination | 248.06 |
| SAMN12500542 | Cucumis sativus | Gy14 | Fruit peel at 16 days post pollination | 271.15 |
| SAMN12500543 | Cucumis sativus | Poinsett 76 | Fruit peel at 8 days post pollination | 234.69 |
| SAMN12500544 | Cucumis sativus | Poinsett 76 | Fruit peel at 16 days post pollination | 323.45 |
|
| PRJNA564950: Transcriptome profiling of mesocarp development (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12727350 | Cucumis sativus | D8 | Mesocarps at 0 day after pollination | 414.75 |
| SAMN12727353 | Cucumis sativus | D8 | Mesocarps at 3 days after pollination | 528.41 |
| SAMN12727356 | Cucumis sativus | D8 | Mesocarps at 6 days after pollination | 450.53 |
| SAMN12727359 | Cucumis sativus | D8 | Mesocarps at 9 days after pollination | 294.36 |
|
| PRJNA647135: Transcriptomes of fruit skin with different colors (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN15577520 | Cucumis sativus | Bai | Fruit skin at 15 days after flowering | 308.98 |
| SAMN15577524 | Cucumis sativus | Lv | Fruit skin at 15 days after flowering | 290.76 |
|
| PRJNA678478: Transcriptome profiling of fruit peels with different colors (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16803070 | Cucumis sativus | L14 | Yellow mature peel | 230.34 |
| SAMN16803071 | Cucumis sativus | L14 | Green-white young peel | 155.66 |
| SAMN16803072 | Cucumis sativus | L19 | White mature peel | 194.29 |
| SAMN16803073 | Cucumis sativus | L19 | Green-white young peel | 159.49 |
|
| PRJNA707246: Transcriptome profiling of yellow and white fruit flesh (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18192479 | Cucumis sativus | NA | Yellow fruit flesh at 10 days after pollination | 316.97 |
| SAMN18192488 | Cucumis sativus | NA | White fruit flesh at 10 days after pollination | 293.27 |
| SAMN18192482 | Cucumis sativus | NA | Yellow fruit flesh at 20 days after pollination | 278.86 |
| SAMN18192491 | Cucumis sativus | NA | White fruit flesh at 20 days after pollination | 293.79 |
| SAMN18192485 | Cucumis sativus | NA | Yellow fruit flesh at 30 days after pollination | 233.55 |
| SAMN18192494 | Cucumis sativus | NA | White fruit flesh at 30 days after pollination | 334.07 |
|
| PRJNA817515: Transcriptomes of fruit flesh and peel (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN26791361 | Cucumis sativus | Chuichung | Peel of ripe fruit | 342.15 |
| SAMN26791363 | Cucumis sativus | White Dadagi | Peel of ripe fruit | 715.53 |
| SAMN26791365 | Cucumis sativus | Mini | Peel of ripe fruit | 434.28 |
| SAMN26791362 | Cucumis sativus | Chuichung | Flesh of ripe fruit | 420.52 |
| SAMN26791364 | Cucumis sativus | White Dadagi | Flesh of ripe fruit | 435.61 |
| SAMN26791366 | Cucumis sativus | Mini | Flesh of ripe fruit | 323.31 |
|
| PRJNA660492: Transcriptome profiling of fruit spine development (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN15951074 | Cucumis sativus | NC072 | Fruit spines at stage II (0.2 cm ovary) | 574.29 |
| SAMN15951077 | Cucumis sativus | NC072 | Fruit spines at stage III (0.35 cm ovary) | 515.25 |
| SAMN15951080 | Cucumis sativus | NC072 | Fruit spines at stage IV (0.65 cm ovary) | 516.29 |
| SAMN15951083 | Cucumis sativus | NC073 | Fruit spines at stage II (0.2 cm ovary) | 489.85 |
| SAMN15951086 | Cucumis sativus | NC073 | Fruit spines at stage III (0.35 cm ovary) | 467.37 |
| SAMN15951089 | Cucumis sativus | NC073 | Fruit spines at stage IV (0.65 cm ovary) | 508.79 |
|
| PRJNA852610: Transcriptome profiling of fruit spine (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN29336066 | Cucumis sativus | WZ1 | Fruit spine at 8 days before anthesis | 539.89 |
| SAMN29336069 | Cucumis sativus | WZ1 | Fruit spine at anthesis | 525.77 |
| SAMN29336072 | Cucumis sativus | WZ1 | Fruit spine at 8 days after anthesis | 305.12 |
|
| PRJNA552914: Trancriptome profiling of homo- and hetero-grafted plants (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12221401 | Cucumis sativus | Xintaimici | Leaf of homografting plants (cucumber grafted on cucumber) | 163.31 |
| SAMN12221407 | Cucumis sativus | Xintaimici | Leaf of heterografting plants (cucumber grafted on C. moschata) | 212.26 |
| SAMN12221404 | Cucumis sativus | Xintaimici | Root of homografting plants (cucumber grafted on cucumber) | 302.33 |
| SAMN12221416 | Cucumis sativus | Xintaimici | Root of heterografting plants (C. moschata grafted on cucumber) | 314.69 |
|
| PRJNA317163: Grafting changed silicon metabolism and expression of bloom-forming related genes (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04600319 | Cucumis sativus | Shannong No.5 | Pericarp of non-grafted cucumber (with sparse bloom) | 306.34 |
| SAMN04600321 | Cucumis sativus | Shannong No.5 | Pericarp of non-grafted cucumber treated with 1.7mM silicon for 2 hours (with dense bloom) | 432.11 |
| SAMN04600323 | Cucumis sativus | Shannong No.5 | Pericarp of self-grafted cucumber (with sparse bloom) | 362.5 |
| SAMN04600325 | Cucumis sativus | Shannong No.5 | Pericarp of self-grafted cucumber treated with 1.7mM silicon for 2 hours (with dense bloom) | 318.68 |
| SAMN04600327 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3212' (with sparse bloom) | 544.23 |
| SAMN04600330 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3212' and treated with 1.7mM silicon for 2 hours (with least bloom) | 381.41 |
| SAMN04600332 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3225' (with sparse bloom) | 421.26 |
| SAMN04600334 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3225' and treated with 1.7mM silicon for 2 hours (with dense bloom) | 307.94 |
|
| PRJNA612596: Transcriptomes of virescent leaf and green leaf (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14377560 | Cucumis sativus | 104Y | The first true leaf of virescent leaf mutant | 497.03 |
| SAMN14377563 | Cucumis sativus | EC1 | The first true leaf of wild type plant (green leaf) | 517.57 |
|
| PRJNA312872: Transcriptome atlas of cucumber (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04530052 | Cucumis sativus | 9930 | Flesh of unfertilized ovary | 297.21 |
| SAMN04530054 | Cucumis sativus | 9930 | Flesh of 1-week-old fruit | 424.87 |
| SAMN04530056 | Cucumis sativus | 9930 | Flesh of 2-week-old fruit | 354.31 |
| SAMN04530058 | Cucumis sativus | 9930 | Flesh of 3-week-old fruit | 330.82 |
| SAMN04530051 | Cucumis sativus | 9930 | Peel of unfertilized ovary | 196.49 |
| SAMN04530053 | Cucumis sativus | 9930 | Peel of 1-week-old fruit | 378.14 |
| SAMN04530055 | Cucumis sativus | 9930 | Peel of 2-week-old fruit | 397.9 |
| SAMN04530057 | Cucumis sativus | 9930 | Peel of 3-week-old fruit | 376.83 |
| SAMN04530050 | Cucumis sativus | 9930 | Unfertilized ovary (not grew) | 517.04 |
| SAMN04530047 | Cucumis sativus | 9930 | Female flower | 110.42 |
| SAMN04530049 | Cucumis sativus | 9930 | Male flower | 135.02 |
| SAMN04530048 | Cucumis sativus | 9930 | Male flower bud | 167.34 |
| SAMN04530038 | Cucumis sativus | 9930 | Cotyledon of 4-week-old seedlings | 342.97 |
| SAMN04530037 | Cucumis sativus | 9930 | Hypocotyl of 4-week-old seedlings | 375.62 |
| SAMN04530036 | Cucumis sativus | 9930 | Root of 4-week-old seedlings | 354.6 |
| SAMN04530039 | Cucumis sativus | 9930 | True Leaf of 4-week-old seedlings | 390.23 |
| SAMN04530042 | Cucumis sativus | 9930 | Young Leaf | 259.55 |
| SAMN04530044 | Cucumis sativus | 9930 | Old leaf | 309.7 |
| SAMN04530043 | Cucumis sativus | 9930 | Petiole of young leaf | 406.38 |
| SAMN04530045 | Cucumis sativus | 9930 | Petiole of old leaf | 388.78 |
| SAMN04530040 | Cucumis sativus | 9930 | Root | 237.08 |
| SAMN04530041 | Cucumis sativus | 9930 | Stem | 389.1 |
| SAMN04530046 | Cucumis sativus | 9930 | Tendril | 232.57 |
|
| PRJNA752681: Transcriptomes of a dark green genotype (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN20604789 | Cucumis sativus | DG | Leaf blade | 292.55 |
| SAMN20604791 | Cucumis sativus | DG | Petiole | 398.55 |
| SAMN20604790 | Cucumis sativus | DG | Stem | 234.79 |
|
| PRJNA80169: Transcriptomes of different cucumber tissues (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN00738224 | Cucumis sativus | Chinese Long | Ovary | 602.5 |
| SAMN00738223 | Cucumis sativus | Chinese Long | Expanded ovary under fertilization (7 days after flowering) | 630.79 |
| SAMN00738222 | Cucumis sativus | Chinese Long | Expanded ovary not fertilized (7 days after flowering) | 313.38 |
| SAMN00738220 | Cucumis sativus | Chinese Long | Female flower | 366.69 |
| SAMN00738221 | Cucumis sativus | Chinese Long | Male flower | 163.6 |
| SAMN00738225 | Cucumis sativus | Chinese Long | Root | 352.71 |
| SAMN00738219 | Cucumis sativus | Chinese Long | Stem | 712.76 |
| SAMN00738218 | Cucumis sativus | Chinese Long | Leaf | 722.9 |
| SAMN00738226 | Cucumis sativus | Chinese Long | Tendril | 951.5 |
| SAMN00738227 | Cucumis sativus | Chinese Long | Base part of tendril | 982.14 |
|
| PRJNA773731: Transcriptomes of apical pistils in wild-type and mutants (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN22504570 | Cucumis sativus | Xintaimici | Apical pistils containing stigmas and styles at anthesis | 67.05 |
| SAMN22504567 | Cucumis sativus | Csalc-/- | Apical pistils containing stigmas and styles at anthesis | 110.31 |
| SAMN22504573 | Cucumis sativus | Csspt-/- | Apical pistils containing stigmas and styles at anthesis | 73.62 |
| SAMN22504565 | Cucumis sativus | CssptCsalc-/- | Apical pistils containing stigmas and styles at anthesis | 96.66 |
|
| PRJNA510369: Transcriptome of lateral bud of CsBRC1 RNAi line (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10602942 | Cucumis sativus | CsBRC1-RNAi | Lateral bud | 740 |
| SAMN10602932 | Cucumis sativus | R1461 | Lateral bud | 453.24 |
|
| PRJNA700062: Transcriptomes of Cshec2 CRISPR mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17821603 | Cucumis sativus | Cshec2 CRISPR mutant | Female bud at 7 days before anthesis | 567.02 |
| SAMN17821606 | Cucumis sativus | XTMC | Female bud at 7 days before anthesis | 579.1 |
|
| PRJNA685868: Transcriptomes of albino mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17098952 | Cucumis sativus | albino mutant | Cotyledon of 7-day-old seedling | 446.58 |
| SAMN17098955 | Cucumis sativus | g32 | Cotyledon of 7-day-old seedling | 382.08 |
|
| PRJNA402017: Transcriptome of young fruits of CsFUL1 overexpression line (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN07614792 | Cucumis sativus | R1407 | Young fruits at 4 days before anthesis (long fruit) | 354.52 |
| SAMN07614794 | Cucumis sativus | CsFUL1 overexpression line | Young fruits at 4 days before anthesis (short fruit) | 64.42 |
|
| PRJNA540430: Transcriptome of fruit of sf2 mutant (short-fruit) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11536744 | Cucumis sativus | 406 | Fruit at 0 days after anthesis | 739.19 |
| SAMN11536742 | Cucumis sativus | sf2 mutant | Fruit at 0 days after anthesis | 618.79 |
|
| PRJNA541993: Transcriptome of fruit peel of an irregularly striped rind mutant (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11606053 | Cucumis sativus | CCMC | Fruit peel at 10 days after post pollination | 314.63 |
| SAMN11606056 | Cucumis sativus | ist mutant | Fruit peel at 10 days after post pollination | 376.61 |
|
| PRJNA685586: Leaf transcriptomes of multiple trichome (mt) mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17088088 | Cucumis sativus | CCMC | The first true leaf | 711.39 |
| SAMN17088091 | Cucumis sativus | mt mutant | The first true leaf | 525.73 |
|
| PRJNA342056: Transcriptomes of CsIND-RNAi lines (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN05735036 | Cucumis sativus | CsIND-RNAi | Leaf vein | 539.14 |
| SAMN05735041 | Cucumis sativus | R1461 | Leaf vein | 808.21 |
| SAMN05735039 | Cucumis sativus | CsIND-RNAi | Young fruit at 4 d before anthesis | 713.76 |
| SAMN05735037 | Cucumis sativus | R1461 | Young fruit at 4 d before anthesis | 687.99 |
|
| PRJNA672817: Transcriptome profiling of micro-plant (mp) mutant (strand-specific) | Download | Show/hide expression |
|
| PRJNA428976: Transcriptomes of young ovaries in the round leaf mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08326585 | Cucumis sativus | Round leaf (rl) mutant | Young ovaries at 4 d before anthesis | 316.27 |
| SAMN08326588 | Cucumis sativus | 649 | Young ovaries at 4 d before anthesis | 328.38 |
|
| PRJNA382994: Transcriptome profiling of mosaic (MSC) mitochondrial mutants (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06768506 | Cucumis sativus | B | Shoots (cut off 0.5 cm below the cotyledons) | 200.84 |
| SAMN06768508 | Cucumis sativus | MSC3 | Shoots (cut off 0.5 cm below the cotyledons) | 242.64 |
| SAMN06768510 | Cucumis sativus | MSC12 | Shoots (cut off 0.5 cm below the cotyledons) | 256.4 |
| SAMN06768512 | Cucumis sativus | MSC16 | Shoots (cut off 0.5 cm below the cotyledons) | 290.39 |
|
| PRJNA765045: Transcriptome profiling of reciprocal hybrids (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN21542188 | Cucumis sativus | ST8-4x9930-3 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 1014.63 |
| SAMN21542191 | Cucumis sativus | 9930-3xST8-4 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 1036.43 |
| SAMN21542194 | Cucumis sativus | ST8-2xGY14-15 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 985.8 |
| SAMN21542197 | Cucumis sativus | GY14-15xST8-2 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 964.61 |
| SAMN21542200 | Cucumis sativus | ST8-4xTMG1-5 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 959.69 |
| SAMN21542203 | Cucumis sativus | TMG1-5xST8-4 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 986.27 |
| SAMN21542206 | Cucumis sativus | ST8-4xGY14-15 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 943.9 |
| SAMN21542209 | Cucumis sativus | GY14-15xST8-4 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 946.45 |
|
| PRJNA428292: Transcriptomes of cucumber ovaries inhibited by dominant fruits (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08286996 | Cucumis sativus var. sativus | Elem female | Ovary at 1 day after pollination in presence of older fruits (f+1) | 418.62 |
| SAMN08286998 | Cucumis sativus var. sativus | Elem female | Ovary at 1 DPA, no pollination (S+1) | 342.66 |
| SAMN08287001 | Cucumis sativus var. sativus | Elem female | Ovary at 1 day after pollination (F+1) | 427.63 |
| SAMN08287004 | Cucumis sativus var. sativus | Elem female | Ovary at anthesis | 568.44 |
|
| PRJNA431715: Transcriptomes of ovaries and pericarps from numerous-spine and few-spine inbred lines (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08398980 | Cucumis sativus | NCG122 | Pericarp on the day of flowering of numerous fruit spine line | 629.65 |
| SAMN08398977 | Cucumis sativus | NCG122 | Ovary at 6 days before flowering of numerous fruit spine line | 782.59 |
| SAMN08398986 | Cucumis sativus | NCG121 | Pericarp on the day of flowering of few fruit spine line | 837.47 |
| SAMN08398983 | Cucumis sativus | NCG121 | Ovary at 6 days before flowering of few fruit spine line | 895.16 |
|
| PRJNA613672: Transcriptome profiling of ovary culture-induced embryogenesis (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14414632 | Cucumis sativus | SG033 | Fresh unpollinated ovaries cultured for 0 d | 520.63 |
| SAMN14414629 | Cucumis sativus | SG033 | Ovules cultured for 2 d | 584.42 |
| SAMN14414626 | Cucumis sativus | SG033 | Embryos cultured for 10 d | 430.74 |
| SAMN14414623 | Cucumis sativus | SG033 | Embryos cultured for 20 d | 348.11 |
| SAMN14414621 | Cucumis sativus | SG033 | Embryos cultured for 30 d | 464.33 |
| SAMN14414646 | Cucumis sativus | SG033 | Shoots after 60 d of culture | 420.2 |
|
| PRJDB6130: Hydrotropism-related gene expression in roots exposed to different gravitational conditions (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMD00089537 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions without hydrostimulation | 1554.57 |
| SAMD00089538 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions without hydrostimulation | 1474.74 |
| SAMD00089539 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to hydrostimulation | 1370.99 |
| SAMD00089540 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to hydrostimulation | 1359.85 |
| SAMD00089541 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to H2O saturation | 1332.7 |
| SAMD00089542 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to H2O saturation | 1284.83 |
| SAMD00089543 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from germinated cucumber seedlings exposed to hydrostimulation under clinostat conditions for 4 h | 1306.26 |
| SAMD00089544 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from germinated cucumber seedlings exposed to hydrostimulation under clinostat conditions for 4 h | 1283.66 |
| SAMD00089545 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots that bent to the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 1418.14 |
| SAMD00089546 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots that bent to the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 1400.48 |
| SAMD00089547 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots that bent away from the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 1398.45 |
| SAMD00089548 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots that bent away from the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 1345.92 |
|
| PRJNA271595: Transcriptome profiling of root development (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN03275394 | Cucumis sativus | Gy14 | Root elongation zone | 811.53 |
| SAMN03275412 | Cucumis sativus | Gy14 | Root meristematic zone | 1463.89 |
| SAMN03275424 | Cucumis sativus | Gy14 | Root differentiation zone | 382.18 |
|
| PRJNA319011: Transcriptome profiles of seed from fruit at different developmental stages (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04867895 | Cucumis sativus | Marketmore | Seed at 28 days after pollination | 52.01 |
| SAMN04867896 | Cucumis sativus | Marketmore | Seed at 37 days after pollination | 66.26 |
| SAMN04867897 | Cucumis sativus | Marketmore | Seed at 45 days after pollination | 307.75 |
| SAMN04867898 | Cucumis sativus | Marketmore | Seed at 60 days after pollination | 611.37 |
|
| PRJNA359788: Transcriptomes of cucumber lines with different sex types (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06198176 | Cucumis sativus | B10 | Shoot apex from monoecious B10 cucumber line - male | 550.31 |
| SAMN06198221 | Cucumis sativus | 859 | Shoot apex from androecious 859 cucumber line - male | 501.47 |
| SAMN06198177 | Cucumis sativus | Gy3 | Shoot apex from gynoecious Gy3 cucumber line - female | 511.72 |
| SAMN06198244 | Cucumis sativus | 2gg | Shoot apex from gynoecious 2gg cucumber line - female | 391.37 |
| SAMN06198219 | Cucumis sativus | Hgy3 | Shoot apex from hermaphrodite Hgy3 cucumber line - hermaphrodite | 518.31 |
| SAMN06198226 | Cucumis sativus | LH | Shoot apex from andromonoecious LH cucumber line - hermaphrodite | 303.18 |
|
| PRJNA827999: Transcriptome profiling of shoot apex in determinate/indeterminate growth genotypes (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN27628251 | Cucumis sativus | D82 | Shoot apex of the first expanding leaf from the determinate growth genotype | 1154.38 |
| SAMN27628254 | Cucumis sativus | CCMC | Shoot apex of the first expanding leaf from the indeterminate growth genotype | 2238.82 |
| SAMN27628252 | Cucumis sativus | D82 | Shoot apex of the third expanding leaf from the determinate growth genotype | 870.43 |
| SAMN27628255 | Cucumis sativus | CCMC | Shoot apex of the third expanding leaf from the indeterminate growth genotype | 1391.36 |
| SAMN27628253 | Cucumis sativus | D82 | Shoot apex of the sixth expanding leaf from the determinate growth genotype | 855.23 |
| SAMN27628256 | Cucumis sativus | CCMC | Shoot apex of the sixth expanding leaf from the indeterminate growth genotype | 1056.23 |
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