| PRJNA376073: Transcriptome responses to GA3 (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SRX2577785 | Cucumis sativus | 13_3B | Shoot apices without GA3 treatment | 172.88 |
| SRX2577783 | Cucumis sativus | 13_3B | Shoot apices treated with GA3 for 6 h | 184.29 |
| SRX2577781 | Cucumis sativus | 13_3B | Shoot apices treated with GA3 for 12 h | 242.16 |
|
| PRJNA613788: Transcriptome response to sugar treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14419958 | Cucumis sativus | ZK | Non-pollinated fruit | 135.7 |
| SAMN14419952 | Cucumis sativus | ZK | Fruit at one day after anthesis treated with fructose | 158.91 |
| SAMN14419954 | Cucumis sativus | ZK | Fruit at one day after anthesis treated with glucose | 169.65 |
| SAMN14419956 | Cucumis sativus | ZK | Fruit at one day after anthesis treated with sucrose | 153.28 |
|
| PRJNA667293: Transcriptome profiling of lateral root development regulated by GA3 (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16365205 | Cucumis sativus | Daqingba | Roots of seedlings with mock treatment at 2 days after germination | 91.91 |
| SAMN16365207 | Cucumis sativus | Daqingba | Roots of seedlings treated with 50 uM GA3 at 2 days after germination | 94.17 |
| SAMN16365210 | Cucumis sativus | Daqingba | Roots of seedlings with mock treatment at 3 days after germination | 145.97 |
| SAMN16365213 | Cucumis sativus | Daqingba | Roots of seedlings treated with 50 uM GA3 at 3 days after germination | 144.78 |
| SAMN16365216 | Cucumis sativus | Daqingba | Roots of seedlings with mock treatment at 5 days after germination | 233.64 |
| SAMN16365219 | Cucumis sativus | Daqingba | Roots of seedlings treated with 50 uM GA3 at 5 days after germination | 215.95 |
|
| PRJNA782544: Transcriptome responses to ethrel (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN23383751 | Cucumis sativus | Xinchun No. 4 | Explants treated with 0.5 uM ethrel for 48 hours | 325.44 |
| SAMN23383748 | Cucumis sativus | Xinchun No. 4 | Explants treated with distilled water for 48 hours | 285.14 |
|
| PRJNA316747: Transcriptomes of cucumber roots inoculated by AMF (Rhizophagus irregularis) under low temperature (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04589924 | Cucumis sativus | Zhongnong No. 26 | Root of non-inoculated plant under normal temperature | 202.42 |
| SAMN04589926 | Cucumis sativus | Zhongnong No. 26 | Root of plant inoculated with AMF R. irregularis under normal temperature | 177.06 |
| SAMN04589925 | Cucumis sativus | Zhongnong No. 26 | Root of non-inoculated plant under low temperature | 157.95 |
| SAMN04589927 | Cucumis sativus | Zhongnong No. 26 | Root of plant inoculated with AMF R. irregularis under low temperature | 187.42 |
|
| PRJNA438923: Transcriptome responses to chilling stress (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08731966 | Cucumis sativus | Cu-01 | Leaves of untreated plants | 170.12 |
| SAMN08731973 | Cucumis sativus | Cu-01 | Leaves of plants exposed to an air temperature of 6℃ for 2 h | 188.03 |
| SAMN08731970 | Cucumis sativus | Cu-01 | Leaves of plants exposed to an air temperature of 6℃ for 6 h | 164.07 |
| SAMN08731967 | Cucumis sativus | Cu-01 | Leaves of plants exposed to an air temperature of 6℃ for 12 h | 169.12 |
|
| PRJNA701131: Transcriptome responses of grafted cucumber to cold stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17848873 | Cucumis sativus | Jinyou 35 | Leaves of cucumber grafted on pumpkin under normal temperature (25 ℃) | 101.17 |
| SAMN17848870 | Cucumis sativus | Jinyou 35 | Leaves of homografted cucumber under normal temperature (25 ℃) | 97.78 |
| SAMN17848879 | Cucumis sativus | Jinyou 35 | Leaves of cucumber grafted on pumpkin under cold temperature (5 ℃) | 99.79 |
| SAMN17848876 | Cucumis sativus | Jinyou 35 | Leaves of homografted cucumber under cold temperature (5 ℃) | 88.37 |
|
| PRJNA817708: Transcriptome responses to cold stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN26806305 | Cucumis sativus | CT90 | Leaf of tolerant line at 24h after cold treatment of 6 C | 57.24 |
| SAMN26806311 | Cucumis sativus | CT57 | Leaf of sensitive line at 24h after cold treatment of 6 C | 56.72 |
| SAMN26806308 | Cucumis sativus | CT90 | Root of tolerant line at 24h after cold treatment of 6 C | 127.17 |
| SAMN26806314 | Cucumis sativus | CT57 | Root of sensitive line at 24h after cold treatment of 6 C | 128.71 |
|
| PRJNA720243: Transcriptome response of grafted cucumber to drought stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18643059 | Cucumis sativus | EC1 | Leaf of homografted cucumber plant under control conditions | 115.65 |
| SAMN18643060 | Cucumis sativus | EC1 | Leaf of homografted cucumber plant under drought stress | 180.33 |
| SAMN18643061 | Cucumis sativus | EC1 | Leaf of cucumber plant grafted onto Cucurbits moschata under control conditions | 97.9 |
| SAMN18643062 | Cucumis sativus | EC1 | Leaf of cucumber plant grafted onto Cucurbits moschata under drought stress | 125.19 |
|
| PRJEB7612: Transcriptome response to silicon treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMEA3105050 | Cucumis sativus | B10 | Leaves and stems of untreated plants | 132.18 |
| SAMEA3105054 | Cucumis sativus | B10 | Leaves and stems of plants under silicon treatment | 105.54 |
|
| PRJNA307279: Transcriptome profiles of grafted plants under Pi stress (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04457411 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants (with mature leaves removed) under +Pi for 24 h | 85.99 |
| SAMN04457412 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants (with mature leaves removed) under -Pi for 24 h | 96.04 |
| SAMN04457417 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants under +Pi for 24 h | 104.96 |
| SAMN04457418 | Cucumis sativus | Chinese Long | Developing leaf of homo-grafted cucumber plants under -Pi for 24 h | 99.33 |
| SAMN04457423 | Cucumis sativus | Chinese Long | Developing leaf of non-grafted cucumber plants under +Pi for 24 h | 112.46 |
| SAMN04457424 | Cucumis sativus | Chinese Long | Developing leaf of non-grafted cucumber plants under -Pi for 24 h | 118.85 |
| SAMN04457413 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants (with mature leaves removed) under +Pi for 24 h | 100.45 |
| SAMN04457414 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants (with mature leaves removed) under -Pi for 24 h | 100.68 |
| SAMN04457419 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants under +Pi for 24 h | 111.94 |
| SAMN04457420 | Cucumis sativus | Chinese Long | Shoot apex of homo-grafted cucumber plants under -Pi for 24 h | 109.8 |
| SAMN04457425 | Cucumis sativus | Chinese Long | Shoot apex of non-grafted cucumber plants under +Pi for 24 h | 124.27 |
| SAMN04457426 | Cucumis sativus | Chinese Long | Shoot apex of non-grafted cucumber plants under -Pi for 24 h | 115.59 |
| SAMN04457415 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants (with stock leaves removed) under +Pi for 24 h | 129.42 |
| SAMN04457416 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants (with stock leaves removed) under -Pi for 24 h | 126.33 |
| SAMN04457421 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants under +Pi for 24 h | 127.31 |
| SAMN04457422 | Cucumis sativus | Chinese Long | Root of homo-grafted cucumber plants under -Pi for 24 h | 142.82 |
| SAMN04457427 | Cucumis sativus | Chinese Long | Root of non-grafted cucumber plants under +Pi for 24 h | 150.91 |
| SAMN04457428 | Cucumis sativus | Chinese Long | Root of non-grafted cucumber plants under -Pi for 24 h | 172.2 |
| SAMN04457397 | Cucumis sativus | Chinese long | Lamina under +Pi for 12 h | 94.75 |
| SAMN04457398 | Cucumis sativus | Chinese long | Lamina under -Pi for 12 h | 113.59 |
| SAMN04457399 | Cucumis sativus | Chinese long | Major vein under +Pi for 12 h | 183.09 |
| SAMN04457400 | Cucumis sativus | Chinese long | Major vein under -Pi for 12 h | 142.93 |
| SAMN04457401 | Cucumis sativus | Chinese long | Petiole vascular tissue under +Pi for 12 h | 303.54 |
| SAMN04457402 | Cucumis sativus | Chinese long | Petiole vascular tissue under -Pi for 12 h | 315.46 |
| SAMN04457403 | Cucumis sativus | Chinese long | Phloem sap under +Pi for 12 h | 244.56 |
| SAMN04457404 | Cucumis sativus | Chinese long | Phloem sap under -Pi for 12 h | 281.26 |
| SAMN04457405 | Cucumis sativus | Chinese long | Internode vascular tissue under +Pi for 12 h | 440.46 |
| SAMN04457406 | Cucumis sativus | Chinese long | Internode vascular tissue under -Pi for 12 h | 425.6 |
| SAMN04457407 | Cucumis sativus | Chinese long | Shoot apex under +Pi for 12 h | 95.85 |
| SAMN04457408 | Cucumis sativus | Chinese long | Shoot apex under -Pi for 12 h | 71.04 |
| SAMN04457409 | Cucumis sativus | Chinese long | Root under +Pi for 12 h | 213.29 |
| SAMN04457410 | Cucumis sativus | Chinese long | Root under -Pi for 12 h | 305.57 |
|
| PRJNA523714: Transcriptome profiling of C. campestris-connected cucumber plant clusters under nitrogen-depleted condition (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10987397 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-replete condition (both cucumber plants supplied with 10 mM KNO3) after 0 hour | 99.74 |
| SAMN10987421 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 2 hours | 79.39 |
| SAMN10987445 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 8 hours | 99.52 |
| SAMN10987469 | Cucumis sativus | Summer Strong | Leaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 48 hours | 102.53 |
| SAMN10987406 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 2 hours | 81.41 |
| SAMN10987430 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 8 hours | 111.65 |
| SAMN10987454 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 48 hours | 88.18 |
| SAMN10987415 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 2 hours | 78.47 |
| SAMN10987439 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 8 hours | 77.5 |
| SAMN10987463 | Cucumis sativus | Summer Strong | Leaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 48 hours | 77.38 |
| SAMN10987400 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-replete condition (both cucumber plants supplied with 10 mM KNO3) after 0 hour | 265.33 |
| SAMN10987424 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 2 hours | 193.91 |
| SAMN10987448 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 8 hours | 276.25 |
| SAMN10987472 | Cucumis sativus | Summer Strong | Roots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 48 hours | 392.94 |
| SAMN10987409 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 2 hours | 176.13 |
| SAMN10987433 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 8 hours | 284.36 |
| SAMN10987457 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 48 hours | 347.28 |
| SAMN10987418 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 2 hours | 175.29 |
| SAMN10987442 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 8 hours | 260.86 |
| SAMN10987466 | Cucumis sativus | Summer Strong | Roots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 48 hours | 320.39 |
|
| PRJNA765376: Transcriptome responses to Sulfur (S) fumigation (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN21555952 | Cucumis sativus | Chinese Long | Non sulfur-fumigated ovaries at 0 days post pollination | 239.29 |
| SAMN21555953 | Cucumis sativus | Chinese Long | Sulfur-fumigated ovaries at 0 days post pollination | 167.83 |
| SAMN21555954 | Cucumis sativus | Chinese Long | Non sulfur-fumigated commercial fruits at 12 days post pollination | 363.29 |
| SAMN21555955 | Cucumis sativus | Chinese Long | Sulfur-fumigated commercial fruits at 12 days post pollination | 338.36 |
| SAMN21555950 | Cucumis sativus | Chinese Long | Non sulfur-fumigated mature leaves | 113.04 |
| SAMN21555951 | Cucumis sativus | Chinese Long | Sulfur-fumigated mature leaves | 156.52 |
| SAMN21555948 | Cucumis sativus | Chinese Long | Non sulfur-fumigated young leaves | 168.82 |
| SAMN21555949 | Cucumis sativus | Chinese Long | Sulfur-fumigated young leaves | 106.86 |
|
| PRJNA634519: Transcriptome response to high temperature stress (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14998224 | Cucumis sativus | Chinese Long | Leaves of untreated plants | 67.24 |
| SAMN14998221 | Cucumis sativus | Chinese Long | Leaves of plants under heat treatment at 42℃ for 3 hours | 157.61 |
| SAMN14998218 | Cucumis sativus | Chinese Long | Leaves of plants under heat treatment at 42℃ for 6 hours | 181.74 |
|
| PRJNA748460: Transcriptome profiling of male flower development under heat stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN20335859 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 0-3 mm under normal conditions | 162.05 |
| SAMN20335871 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 0-3 mm under heat stress | 208.85 |
| SAMN20335862 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 3-6 mm under normal conditions | 128.72 |
| SAMN20335874 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 3-6 mm under heat stress | 142.62 |
| SAMN20335865 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 6-9 mm under normal conditions | 112.73 |
| SAMN20335877 | Cucumis sativus | B80 | Anthers of male flowers with lengths of 6-9 mm under heat stress | 145.58 |
| SAMN20335868 | Cucumis sativus | B80 | Anthers of male flowers with lengths of >9 mm under normal conditions | 88.34 |
| SAMN20335880 | Cucumis sativus | B80 | Anthers of male flowers with lengths of >9 mm under heat stress | 89.89 |
|
| PRJNA380322: Transcriptome responses to temperature and photoperiod (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06640661 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under low temperature, short day | 135.75 |
| SAMN06640663 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under high temperature, short day | 168.49 |
| SAMN06640662 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under low temperature, long day | 153.44 |
| SAMN06640664 | Cucumis sativus | Chinese Long | Shoot apices from seedlings under high temperature, long day | 153.32 |
|
| PRJNA475903: Transcriptome responses to photoperiod treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09405568 | Cucumis sativus | SWCC8 | Leaves of plant at 0 day of photoperiod treatment | 156.4 |
| SAMN09405577 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 7, 14 and 21 days of equal-day treatment | 94.92 |
| SAMN09405571 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 7, 14 and 21 days of short-day treatment | 87.46 |
| SAMN09405580 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 37 and 44 days of equal-day treatment | 133.85 |
| SAMN09405574 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 37 and 44 days of short-day treatment | 114.19 |
| SAMN09405583 | Cucumis sativus | SWCC8 | Leaves (mixed) of plants at 52 and 59 days of equal-day treatment | 135.25 |
|
| PRJNA476021: Transcriptome responses to different ratios of blue and red light (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09425165 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 5 days | 65.52 |
| SAMN09425169 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 10 days | 182.78 |
| SAMN09425173 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 15 days | 125.9 |
| SAMN09425167 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 5 days | 90.63 |
| SAMN09425171 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 10 days | 142.18 |
| SAMN09425175 | Cucumis sativus | Huaqing No. 5 | Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 15 days | 165.71 |
|
| PRJNA782229: Transcriptome profiling of fruit development under different photoperiod treatment (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SRX13518806 | Cucumis sativus | CC3 | Fruits at 10 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 419.99 |
| SRX13518810 | Cucumis sativus | CC3 | Fruits at 10 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 239.49 |
| SRX13518829 | Cucumis sativus | CC3 | Fruits at 20 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 364.52 |
| SRX13518813 | Cucumis sativus | CC3 | Fruits at 20 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 353.52 |
| SRX13518850 | Cucumis sativus | CC3 | Fruits at 30 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 251.19 |
| SRX13518816 | Cucumis sativus | CC3 | Fruits at 30 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 149.93 |
| SRX13518808 | Cucumis sativus | CC3 | Fruits at 40 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D) | 282.92 |
| SRX13518820 | Cucumis sativus | CC3 | Fruits at 40 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D) | 351.98 |
| SRX13518823 | Cucumis sativus | SWCC8 | Fruits at 10 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 512.44 |
| SRX13518836 | Cucumis sativus | SWCC8 | Fruits at 10 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 254.66 |
| SRX13518826 | Cucumis sativus | SWCC8 | Fruits at 20 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 446.2 |
| SRX13518839 | Cucumis sativus | SWCC8 | Fruits at 20 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 314.74 |
| SRX13518830 | Cucumis sativus | SWCC8 | Fruits at 30 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 498.34 |
| SRX13518843 | Cucumis sativus | SWCC8 | Fruits at 30 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 365.97 |
| SRX13518833 | Cucumis sativus | SWCC8 | Fruits at 40 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D) | 477.69 |
| SRX13518846 | Cucumis sativus | SWCC8 | Fruits at 40 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D) | 321.08 |
|
| PRJNA437579: Root transcriptome responses to salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08668092 | Cucumis sativus | Jinchun No. 2 | Fresh root apexes (0-2 mm from the root tip) from seedlings without NaCl treatment | 186.73 |
| SAMN08668098 | Cucumis sativus | Jinchun No. 2 | Fresh root apexes (0-2 mm from the root tip) from seedlings after 24 hours treatment with 75 mM NaCl | 71.51 |
|
| PRJNA477930: Transcriptome responses to salt stress and silicon treatment (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09487602 | Cucumis sativus | JinYou 1 | Leaves of untreated plants | 66.11 |
| SAMN09487597 | Cucumis sativus | JinYou 1 | Leaves of plants treated with silicon for three days | 66.12 |
| SAMN09487599 | Cucumis sativus | JinYou 1 | Leaves of plants treated with salt for three days | 65.07 |
| SAMN09487594 | Cucumis sativus | JinYou 1 | Leaves of plants treated with salt and silicon for three days | 79.6 |
|
| PRJNA511946: Transcriptome response to salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10653474 | Cucumis sativus | JinYou 1 | Roots of non-stressed plants | 235.09 |
| SAMN10653467 | Cucumis sativus | JinYou 1 | Roots of plants under salt stress for 3 days | 103.22 |
|
| PRJNA524275: Transcriptome profiling of C. campestris-connected cucumber plant clusters under salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11020240 | Cucumis sativus | Jinyou 35 | Leaves, both cucumber plants were mock treated for 12/24 h | 49.08 |
| SAMN11020243 | Cucumis sativus | Jinyou 35 | Leaves of plant treated with 50 mM NaCl for 12 h, while the other was mock treated | 59.47 |
| SAMN11020246 | Cucumis sativus | Jinyou 35 | Leaves of mock treated plant, while the other was treated with 50 mM NaCl for 12 h | 42.67 |
| SAMN11020249 | Cucumis sativus | Jinyou 35 | Leaves, both cucumber plants treated with 50 mM NaCl for 12 h | 51.55 |
| SAMN11020252 | Cucumis sativus | Jinyou 35 | Leaves of plant treated with 50 mM NaCl for 24 h, while the other was mock treated | 51.17 |
| SAMN11020255 | Cucumis sativus | Jinyou 35 | Leaves of mock treated plant, while the other was treated with 50 mM NaCl for 24 h | 49.93 |
| SAMN11020258 | Cucumis sativus | Jinyou 35 | Leaves, both cucumber plants treated with 50 mM NaCl for 24 h | 54.5 |
| SAMN11020261 | Cucumis sativus | Jinyou 35 | Roots, both cucumber plants were mock treated for 12/24 h | 180.02 |
| SAMN11020264 | Cucumis sativus | Jinyou 35 | Roots of plant treated with 50 mM NaCl for 12 h, while the other was mock treated | 207.54 |
| SAMN11020267 | Cucumis sativus | Jinyou 35 | Roots of mock treated plant, while the other was treated with 50 mM NaCl for 12 h | 230.75 |
| SAMN11020270 | Cucumis sativus | Jinyou 35 | Roots, both cucumber plants treated with 50 mM NaCl for 12 h | 237.9 |
| SAMN11020273 | Cucumis sativus | Jinyou 35 | Roots of plant treated with 50 mM NaCl for 24 h, while the other was mock treated | 251.91 |
| SAMN11020276 | Cucumis sativus | Jinyou 35 | Roots of mock treated plant, while the other was treated with 50 mM NaCl for 24 h | 293.31 |
| SAMN11020279 | Cucumis sativus | Jinyou 35 | Roots, both cucumber plants treated with 50 mM NaCl for 24 h | 254.64 |
|
| PRJNA563457: Transcriptome responses to H2S-regulated salt stress (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12674486 | Cucumis sativus | Chunxiaqiuwang | Leaves of untreated plants | 161.39 |
| SAMN12674489 | Cucumis sativus | Chunxiaqiuwang | Leaves of plants treated with 200 mM NaCl for 7 days | 141.06 |
| SAMN12674492 | Cucumis sativus | Chunxiaqiuwang | Leaves of plants treated with 200 mM NaCl + 15.0 uM NaHS for 7 days | 162.66 |
|
| PRJNA678740: Transcriptome responses to long-term waterlogging (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16811424 | Cucumis sativus | DH2 | Roots of tolerant plants untreated, cultivated in optimal conditions | 241.61 |
| SAMN16811567 | Cucumis sativus | DH2 | Roots of tolerant plants after 7 days of waterlogging and 14 days of recovery period | 114.54 |
| SAMN16811530 | Cucumis sativus | DH2 | Roots of non-primed tolerant plants, waterlogged for 7 days only once | 278.87 |
| SAMN16811572 | Cucumis sativus | DH2 | Roots of primed tolerant plants; waterlogged twice after 14 days of recovery period | 173.86 |
| SAMN16811671 | Cucumis sativus | DH4 | Roots of sensitive plants untreated, cultivated in optimal conditions | 242.59 |
| SAMN16811697 | Cucumis sativus | DH4 | Roots of sensitive plants after 7 days of waterlogging and 14 days of recovery period | 164.42 |
| SAMN16811676 | Cucumis sativus | DH4 | Roots of non-primed sensitive plants; waterlogged for 7 days only once | 231.5 |
| SAMN16811714 | Cucumis sativus | DH4 | Roots of primed sensitive plants; waterlogged twice after 14 days of recovery period | 243.33 |
|
| PRJNA799460: Transcriptome responses of hypocotyl to different waterlogging stress treatments (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN25172608 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber under control conditions for 48 hours | 223.37 |
| SAMN25172611 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber under waterlogging for 48 hours | 192.27 |
| SAMN25172614 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber treated with 10uM ACC waterlogging for 48 hours | 175.53 |
| SAMN25172617 | Cucumis sativus | Zaoer-N | Hypocotyl of cucumber treated with 10uM AOA waterlogging for 48 hours | 221.99 |
|
| PRJNA844418: Transcriptome responses of different tissues of hypocotyl to waterlogging (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN28817254 | Cucumis sativus | Zaoer-N | Hypocotyl epidermis of cucumber under control conditions for 48 hours | 274.44 |
| SAMN28817245 | Cucumis sativus | Zaoer-N | Hypocotyl epidermis of cucumber under waterlogging stress for 48 hours | 185.3 |
| SAMN28817257 | Cucumis sativus | Zaoer-N | Hypocotyl vascular bundles of cucumber under control conditions for 48 hours | 197.15 |
| SAMN28817248 | Cucumis sativus | Zaoer-N | Hypocotyl vascular bundle of cucumber under waterlogging stress for 48 hours | 279.6 |
| SAMN28817260 | Cucumis sativus | Zaoer-N | Hypocotyl basal tissue of cucumber under control conditions for 48 hours | 160.53 |
| SAMN28817251 | Cucumis sativus | Zaoer-N | Hypocotyl basic tissue of cucumber under waterlogging stress for 48 hours | 207.61 |
|
| PRJNA563186: Transcriptome responses to Alternaria cucumerina (alternaria leaf spot) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12670099 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 2 days post mock treatment | 121.98 |
| SAMN12670096 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 2 days post inoculation with Alternaria cucumerina | 105.99 |
| SAMN12670105 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 6 days post mock treatment | 121.47 |
| SAMN12670102 | Cucumis sativus | Beijing204 | Leaf of susceptible line at 6 days post inoculation with Alternaria cucumerina | 119.72 |
| SAMN12670111 | Cucumis sativus | D1322 | Leaf of resistant line at 2 days post mock treatment | 174.61 |
| SAMN12670108 | Cucumis sativus | D1322 | Leaf of resistant line at 2 days post inoculation with Alternaria cucumerina | 147.01 |
| SAMN12670117 | Cucumis sativus | D1322 | Leaf of resistant line at 6 days post mock treatment | 76.93 |
| SAMN12670114 | Cucumis sativus | D1322 | Leaf of resistant line at 6 days post inoculation with Alternaria cucumerina | 82.12 |
|
| PRJNA388584: Transcriptome responses to downy mildew (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN07179433 | Cucumis sativus | PI 197088 | Leaf of resistant line at 0 h post inoculation with Pseudoperonospora cubensis | 63.77 |
| SAMN07179434 | Cucumis sativus | PI 197088 | Leaf of resistant line at 6 h post inoculation with Pseudoperonospora cubensis | 58.83 |
| SAMN07179435 | Cucumis sativus | PI 197088 | Leaf of resistant line at 24 h post inoculation with Pseudoperonospora cubensis | 188.28 |
|
| PRJNA544259: Transcriptome responses to downy mildew (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11831000 | Cucumis sativus | HS279 | Leaves of plants at three days post mock treatment | 55.43 |
| SAMN11831003 | Cucumis sativus | HS279 | Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew) | 46.93 |
| SAMN11831006 | Cucumis sativus | NIL DM4.1.2 | Leaves of plants at three days post mock treatment | 72.16 |
| SAMN11831009 | Cucumis sativus | NIL DM4.1.2 | Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew) | 48.73 |
| SAMN11831012 | Cucumis sativus | NIL DM4.1.3 | Leaves of plants at three days post mock treatment | 60.7 |
| SAMN11831015 | Cucumis sativus | NIL DM4.1.3 | Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew) | 52.67 |
|
| PRJNA776553: Garlic volatile diallyl disulfide (DADS) induced cucumber resistance to downy mildew (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN22799462 | Cucumis sativus | CCMC | Leaf of plant uninoculated with P. cubensis and not treated with DADS | 182.74 |
| SAMN22799464 | Cucumis sativus | CCMC | Leaf of plant uninoculated with P. cubensis and treated with DADS | 132.03 |
| SAMN22799450 | Cucumis sativus | CCMC | Leaf of plant at 4 h post inoculation of P. cubensis and not treated with DADS | 140.98 |
| SAMN22799452 | Cucumis sativus | CCMC | Leaf of plant at 4 h post inoculation of P. cubensis and treated with DADS | 122.95 |
| SAMN22799454 | Cucumis sativus | CCMC | Leaf of plant at 24 h post inoculation of P. cubensis and not treated with DADS | 202.53 |
| SAMN22799456 | Cucumis sativus | CCMC | Leaf of plant at 24 h post inoculation of P. cubensis and treated with DADS | 181.11 |
| SAMN22799458 | Cucumis sativus | CCMC | Leaf of plant at 48 h post inoculation of P. cubensis and not treated with DADS | 111.49 |
| SAMN22799460 | Cucumis sativus | CCMC | Leaf of plant at 48 h post inoculation of P. cubensis and treated with DADS | 90.62 |
|
| PRJNA472169: Transcriptome responses to Fusarium oxysporum (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09228081 | Cucumis sativus | Rijiecheng | Roots of plants at 0 h post inoculation with Foc | 298.98 |
| SAMN09228082 | Cucumis sativus | Rijiecheng | Roots of plants at 24 h post inoculation with Foc | 456.95 |
| SAMN09228083 | Cucumis sativus | Rijiecheng | Roots of plants at 48 h post inoculation with Foc | 479.15 |
| SAMN09228084 | Cucumis sativus | Rijiecheng | Roots of plants at 96 h post inoculation with Foc | 413.6 |
| SAMN09228085 | Cucumis sativus | Rijiecheng | Roots of plants at 192 h post inoculation with Foc | 351.69 |
|
| PRJNA484083: Transcriptome profiling of cucumber Fusarium wilt resistance induced by intercropping with celery (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN09759444 | Cucumis sativus | Fuyang | Roots of monocultured resistant plants inoculated with Fusarium oxysporum | 97.42 |
| SAMN09759446 | Cucumis sativus | Fuyang | Roots of resistant plants intercropped with celery and inoculated with Fusarium oxysporum | 150.63 |
| SAMN09759443 | Cucumis sativus | Tangyan | Roots of monocultured susceptible plants inoculated with Fusarium oxysporum | 135.93 |
| SAMN09759445 | Cucumis sativus | Tangyan | Roots of susceptible plants intercropped with celery and inoculated with Fusarium oxysporum | 148.3 |
|
| PRJNA750577: Transcriptome responses of CsRbohB-RNAi lines to Fusarium oxysporum (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN20474027 | Cucumis sativus | CCMC | Roots of control plants at 48 hours | 216.17 |
| SAMN20474030 | Cucumis sativus | CCMC | Roots of plants at 48 hours post inoculation with Foc | 358.98 |
| SAMN20474033 | Cucumis sativus | CsRbohB-RNAi | Roots of control RNAi plants at 48 hours | 205.16 |
| SAMN20474036 | Cucumis sativus | CsRbohB-RNAi | Roots of RNAi plants at 48 hours post inoculation with Foc | 284.81 |
|
| PRJNA419665: Transcriptome responses to nematode infection (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08095139 | Cucumis sativus | CC3 | Roots of susceptible lines at 0 day post inoculation with Meloidogyne incognita | 140.76 |
| SAMN08095141 | Cucumis sativus | CC3 | Roots of susceptible lines at 1 day post inoculation with Meloidogyne incognita | 316.18 |
| SAMN08095143 | Cucumis sativus | CC3 | Roots of susceptible lines at 2 days post inoculation with Meloidogyne incognita | 299.54 |
| SAMN08095152 | Cucumis sativus | CC3 | Roots of susceptible lines at 3 days post inoculation with Meloidogyne incognita | 252.72 |
| SAMN08095163 | Cucumis sativus | IL10-1 | Roots of resistant lines at 0 day post inoculation with Meloidogyne incognita | 157.95 |
| SAMN08095169 | Cucumis sativus | IL10-1 | Roots of resistant lines at 1 day post inoculation with Meloidogyne incognita | 247.23 |
| SAMN08095179 | Cucumis sativus | IL10-1 | Roots of resistant lines at 2 days post inoculation with Meloidogyne incognita | 274.39 |
| SAMN08095185 | Cucumis sativus | IL10-1 | Roots of resistant lines at 3 days post inoculation with Meloidogyne incognita | 289.11 |
|
| PRJNA445328: Transcriptome responses to biocontrol agent Trichoderma longibrachiatum (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08779020 | Cucumis sativus | Chinese Long | Leaves from non-inoculated (with Trichoderma) and non-challenged (with B. cinerea) plants | 173.12 |
| SAMN08779324 | Cucumis sativus | Chinese Long | Leaves from inoculated (with Trichoderma) and non-challenged (with B. cinerea) plants | 202.63 |
| SAMN08394921 | Cucumis sativus | Chinese Long | Leaves from inoculated (with Trichoderma) and challenged (with B. cinerea) plants | 227.23 |
|
| PRJNA285071: Transcriptome responses to Pseudoperonospora cubensis (downy mildew) (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN03737503 | Cucumis sativus | Vlaspik | Leaf of susceptible line under mock treatment | 295.9 |
| SAMN03734820 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 1 day post inoculation with Pseudoperonospora cubensis | 213.98 |
| SAMN03737532 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 2 days post inoculation with Pseudoperonospora cubensis | 105.59 |
| SAMN03737500 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 3 days post inoculation with Pseudoperonospora cubensis | 125.01 |
| SAMN03737501 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 4 days post inoculation with Pseudoperonospora cubensis | 99.94 |
| SAMN03737502 | Cucumis sativus | Vlaspik | Leaf of susceptible line at 6 days post inoculation with Pseudoperonospora cubensis | 128.68 |
| SAMN03737504 | Cucumis sativus | PI 197088 | Leaf of resistant line under mock treatment | 149.07 |
| SAMN03737508 | Cucumis sativus | PI 197088 | Leaf of resistant line at 1 day post inoculation with Pseudoperonospora cubensis | 135.38 |
| SAMN03737509 | Cucumis sativus | PI 197088 | Leaf of resistant line at 2 days post inoculation with Pseudoperonospora cubensis | 90.15 |
| SAMN03737510 | Cucumis sativus | PI 197088 | Leaf of resistant line at 3 days post inoculation with Pseudoperonospora cubensis | 146.5 |
| SAMN03737511 | Cucumis sativus | PI 197088 | Leaf of resistant line at 4 days post inoculation with Pseudoperonospora cubensis | 123.54 |
| SAMN03737512 | Cucumis sativus | PI 197088 | Leaf of resistant line at 6 days post inoculation with Pseudoperonospora cubensis | 122.82 |
|
| PRJNA292785: Transcriptome response by physcion and chrysophanol against cucumber powdery mildew (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN03988531 | Cucumis sativus | Changchunmici | Leaves of plants mock treated before inoculation with Sphaerotheca fuliginea for 3 days | 158.87 |
| SAMN03988533 | Cucumis sativus | Changchunmici | Leaves of plants treated with chrysophano before inoculation with Sphaerotheca fuliginea for 3 days | 173.64 |
| SAMN03988535 | Cucumis sativus | Changchunmici | Leaves of plants treated with physcion before inoculation with Sphaerotheca fuliginea for 3 days | 173.2 |
| SAMN03988538 | Cucumis sativus | Changchunmici | Leaves of plants treated with physcion and chrysophano before inoculation with Sphaerotheca fuliginea for 3 days | 176.39 |
|
| PRJNA321023: Transcriptome responses to powdery mildew disease (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04962346 | Cucumis sativus | D8 | Leaves of susceptible plants at 0 h post inoculation with powdery mildew fungus | 271.65 |
| SAMN04962349 | Cucumis sativus | D8 | Leaves of susceptible plants at 48 h post inoculation with powdery mildew fungus | 225.81 |
| SAMN04962345 | Cucumis sativus | SSL508-28 | Leaves of resistant plants at 0 h post inoculation with powdery mildew fungus | 265.76 |
| SAMN04962354 | Cucumis sativus | SSL508-28 | Leaves of resistant plants at 48 h post inoculation with powdery mildew fungus | 165.77 |
|
| PRJNA603869: Transcriptome responses to powdery mildew disease (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN13943385 | Cucumis sativus | Q10 | Leaf of susceptible line at 24 h post mock treatment | 134.79 |
| SAMN13943392 | Cucumis sativus | Q10 | Leaf of susceptible line at 24 h post inoculation with powdery mildew fungus | 114.36 |
| SAMN13943388 | Cucumis sativus | Q10 | Leaf of susceptible line at 48 h post mock treatment | 120.39 |
| SAMN13943395 | Cucumis sativus | Q10 | Leaf of susceptible line at 48 h post inoculation with powdery mildew fungus | 110.53 |
| SAMN13943398 | Cucumis sativus | XY09-118 | Leaf of resistant line at 24 h post mock treatment | 178.53 |
| SAMN13943405 | Cucumis sativus | XY09-118 | Leaf of resistant line at 24 h post inoculation with powdery mildew fungus | 127.46 |
| SAMN13943402 | Cucumis sativus | XY09-118 | Leaf of resistant line at 48 h post mock treatment | 108.65 |
| SAMN13943408 | Cucumis sativus | XY09-118 | Leaf of resistant line at 48 h post inoculation with powdery mildew fungus | 124.07 |
|
| PRJNA816625: Transcriptome response to Podosphaera xanthii (powdery mildew) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN26686559 | Cucumis sativus | B21-a-2-2-2 | Cotyledon of susceptible line at 0 h post inoculation with Podosphaera xanthii | 138.35 |
| SAMN26686562 | Cucumis sativus | B21-a-2-1-2 | Cotyledon of resistant line at 0 h post inoculation with Podosphaera xanthii | 89.21 |
| SAMN26686565 | Cucumis sativus | B21-a-2-2-2 | Cotyledon of susceptible line at 6 h post inoculation with Podosphaera xanthii | 180.73 |
| SAMN26686568 | Cucumis sativus | B21-a-2-1-2 | Cotyledon of resistant line at 6 h post inoculation with Podosphaera xanthii | 233.85 |
|
| PRJNA704621: Transcriptome responses to Pseudomonas syringae pv. lachrymans (Psl) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18049944 | Cucumis sativus | B10 | Leaf of susceptible line without Psl 814/98 inoculation | 212.69 |
| SAMN18050103 | Cucumis sativus | B10 | Leaf of susceptible line at 1 day post inoculation with Psl 814/98 | 357.27 |
| SAMN18050492 | Cucumis sativus | B10 | Leaf of susceptible line at 3 days post inoculation with Psl 814/98 | 215.67 |
| SAMN18050892 | Cucumis sativus | Gy14 | Leaf of resistant line without Psl 814/98 inoculation | 126.06 |
| SAMN18051058 | Cucumis sativus | Gy14 | Leaf of resistant line at 1 day post inoculation with Psl 814/98 | 191.35 |
| SAMN18051198 | Cucumis sativus | Gy14 | Leaf of resistant line at 3 days post inoculation with Psl 814/98 | 131.54 |
|
| PRJNA345040: Transcriptomes of peels from fruit differing in age-related resistance to Phytophthora capsici (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN05856085 | Cucumis sativus | Vlaspik | Fruit peel collected at 8 days post pollination (susceptible age) | 102.64 |
| SAMN05856088 | Cucumis sativus | Vlaspik | Fruit peel collected at 16 days post pollination (resistant age) | 165.13 |
| SAMN05856091 | Cucumis sativus | Gy14 | Fruit peel collected at 8 days post pollination (susceptible age) | 92.25 |
| SAMN05856094 | Cucumis sativus | Gy14 | Fruit peel collected at 16 days post pollination (susceptible age) | 96.28 |
|
| PRJNA575868: Transcriptomes of fruit peel in response to Phytophthora capsici (fruit rot) (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12912830 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 0 h (Experiment 1) | 141.27 |
| SAMN12912831 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 1) | 169.79 |
| SAMN12912832 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 1) | 116.29 |
| SAMN12912833 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 48 h (Experiment 1) | 162.83 |
| SAMN12912838 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 0 h (Experiment 2) | 91.81 |
| SAMN12912839 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 2 h (Experiment 2) | 93.85 |
| SAMN12912852 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 2 h (Experiment 2) | 104.04 |
| SAMN12912840 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 4 h (Experiment 2) | 111.51 |
| SAMN12912853 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 2) | 108.91 |
| SAMN12912841 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 8 h (Experiment 2) | 107.76 |
| SAMN12912854 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 8 h (Experiment 2) | 111.05 |
| SAMN12912842 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 12 h (Experiment 2) | 140.49 |
| SAMN12912855 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 12 h (Experiment 2) | 90.82 |
| SAMN12912843 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 18 h (Experiment 2) | 135.63 |
| SAMN12912856 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 18 h (Experiment 2) | 91.22 |
| SAMN12912844 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then under mock treatment for 24 h (Experiment 2) | 153.87 |
| SAMN12912857 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 2) | 118.05 |
| SAMN12912834 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 0 h (Experiment 1) | 174.61 |
| SAMN12912835 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 1) | 147.41 |
| SAMN12912836 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 1) | 274.19 |
| SAMN12912837 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 48 h (Experiment 1) | 323.75 |
| SAMN12912845 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 0 h (Experiment 2) | 96.68 |
| SAMN12912846 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 2 h (Experiment 2) | 114.01 |
| SAMN12912858 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 2 h (Experiment 2) | 113.3 |
| SAMN12912847 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 4 h (Experiment 2) | 127.6 |
| SAMN12912859 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 2) | 104.7 |
| SAMN12912848 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 8 h (Experiment 2) | 159.15 |
| SAMN12912860 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 8 h (Experiment 2) | 141.26 |
| SAMN12912849 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 12 h (Experiment 2) | 157.29 |
| SAMN12912861 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 12 h (Experiment 2) | 117.57 |
| SAMN12912850 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 18 h (Experiment 2) | 164.35 |
| SAMN12912862 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 18 h (Experiment 2) | 127.77 |
| SAMN12912851 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then under mock treatment for 24 h (Experiment 2) | 202.05 |
| SAMN12912863 | Cucumis sativus | Poinsett 76 | Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 2) | 157.26 |
|
| PRJNA646644: Transcriptome responses to cucumber green mottle mosaic virus (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN15548822 | Cucumis sativus | 229 | Leaf of healthy control, 3 days | 99.44 |
| SAMN15548823 | Cucumis sativus | 229 | Leaf of plant at 3 days post inoculation with cucumber green mottle mosaic virus | 95.68 |
| SAMN15548824 | Cucumis sativus | 229 | Leaf of healthy control, 20 days | 60.2 |
| SAMN15548825 | Cucumis sativus | 229 | Leaf of plant at 20 days post inoculation with cucumber green mottle mosaic virus | 130.79 |
|
| PRJNA701150: Transcriptome responses to cucumber green mottle mosaic virus (CGMMV) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17849263 | Cucumis sativus | KS | Leaves of healthy plants | 73.57 |
| SAMN17849283 | Cucumis sativus | KS | Bright yellow islands from CGMMV-infected leaves exhibiting early post-recovery stage symptoms | 131.3 |
| SAMN17849285 | Cucumis sativus | KS | Dark green islands from CGMMV-infected leaves exhibiting early post-recovery stage symptoms | 119.43 |
| SAMN17849284 | Cucumis sativus | KS | Bright yellow islands from CGMMV-infected leaves exhibiting late post-recovery stage symptoms | 114.76 |
| SAMN17849286 | Cucumis sativus | KS | Dark green islands from CGMMV-infected leaves exhibiting late post-recovery stage symptoms | 112.15 |
|
| PRJNA837466: Transcriptome response to Prunus necrotic ringspot virus (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN28204068 | Cucumis sativus | NA | Leaf of cucumber seedlings at 12 days of mock treatment | 186.85 |
| SAMN28204071 | Cucumis sativus | NA | Leaf of cucumber seedlings at 12 days post-inoculation with Prunus necrotic ringspot virus | 276.69 |
|
| PRJNA307098: Transcriptome profiling of corolla opening (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04372266 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 1 day after labeling | 171.48 |
| SAMN04372269 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 3 days after labeling | 166.51 |
| SAMN04372272 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 4 days after labeling | 140.87 |
| SAMN04372275 | Cucumis sativus | 6457 | Corolla opening in the normal ovary at 5 days after labeling | 88.06 |
| SAMN04372278 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 1 day after labeling | 126.72 |
| SAMN04372281 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 3 days after labeling | 179.25 |
| SAMN04372284 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 4 days after labeling | 241.55 |
| SAMN04372287 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 5 days after labeling | 250.8 |
| SAMN04372291 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 7 days after labeling | 235.56 |
| SAMN04372294 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 8 days after labeling | 128.95 |
| SAMN04372289 | Cucumis sativus | 6457 | Corolla opening in the super ovary at 9 days after labeling | 103.79 |
|
| PRJNA783663: Time-course transcriptome of multicellular trichomes (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN23441956 | Cucumis sativus | 3542 | Cotyledon at 18 hours after seed soaking | 80.56 |
| SAMN23441959 | Cucumis sativus | 3542 | Cotyledon at 36 hours after seed soaking | 200.01 |
| SAMN23441962 | Cucumis sativus | 3542 | Cotyledon at 60 hours after seed soaking | 299.95 |
| SAMN23441965 | Cucumis sativus | 3542 | Cotyledon at 72 hours after seed soaking | 54.72 |
| SAMN23441968 | Cucumis sativus | 3542 | Cotyledon at 96 hours after seed soaking | 81.71 |
|
| PRJNA258122: Transcriptomes of early fruits (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN02988317 | Cucumis sativus | 408 | Early fruits of about 2-4cm | 135.35 |
| SAMN02988319 | Cucumis sativus | 409 | Early fruits of about 2-4cm | 215.15 |
|
| PRJNA381300: Transcriptome profiling of fruits and leaves (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06673860 | Cucumis sativus | Chinese Long | Leaf | 90.36 |
| SAMN06673861 | Cucumis sativus | Chinese Long | Fruit flesh at 10 days post anthesis | 337.4 |
| SAMN06673862 | Cucumis sativus | Chinese Long | Fruit flesh at 20 days post anthesis | 606.06 |
| SAMN06673863 | Cucumis sativus | Chinese Long | Fruit flesh at 30 days post anthesis | 797.81 |
| SAMN06673864 | Cucumis sativus | Chinese Long | Fruit flesh at 40 days post anthesis | 455.62 |
| SAMN06673866 | Cucumis sativus | Chinese Long | Fruit flesh at 40 days post anthesis, treated with ethylene for 1.5 h | 855.9 |
|
| PRJNA448682: Transcriptome profiling of fruit development (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08862945 | Cucumis sativus | YanBai | Flesh at 3 days after self-pollination | 210.52 |
| SAMN08862951 | Cucumis sativus | YanBai | Flesh at 6 days after self-pollination | 164.96 |
| SAMN08862949 | Cucumis sativus | YanBai | Flesh at 9 days after self-pollination | 245.94 |
| SAMN08862946 | Cucumis sativus | YanBai | Peel at 3 days after self-pollination | 175.53 |
| SAMN08862944 | Cucumis sativus | YanBai | Peel at 6 days after self-pollination | 83.1 |
| SAMN08862950 | Cucumis sativus | YanBai | Peel at 9 days after self-pollination | 88.82 |
|
| PRJNA517913: Transcriptomes of fruits in lines with different carpel numbers (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10847189 | Cucumis sativus | 32X | Fruits at anthesis (carpel number=3) | 217.96 |
| SAMN10847186 | Cucumis sativus | GFC | Fruits at anthesis (carpel number=5) | 129.6 |
|
| PRJNA558838: Transcriptome profiling of fruit development (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12500541 | Cucumis sativus | Gy14 | Fruit peel at 8 days post pollination | 104.47 |
| SAMN12500542 | Cucumis sativus | Gy14 | Fruit peel at 16 days post pollination | 75.44 |
| SAMN12500543 | Cucumis sativus | Poinsett 76 | Fruit peel at 8 days post pollination | 141.3 |
| SAMN12500544 | Cucumis sativus | Poinsett 76 | Fruit peel at 16 days post pollination | 174.59 |
|
| PRJNA564950: Transcriptome profiling of mesocarp development (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12727350 | Cucumis sativus | D8 | Mesocarps at 0 day after pollination | 250.12 |
| SAMN12727353 | Cucumis sativus | D8 | Mesocarps at 3 days after pollination | 217.14 |
| SAMN12727356 | Cucumis sativus | D8 | Mesocarps at 6 days after pollination | 250.74 |
| SAMN12727359 | Cucumis sativus | D8 | Mesocarps at 9 days after pollination | 396.42 |
|
| PRJNA647135: Transcriptomes of fruit skin with different colors (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN15577520 | Cucumis sativus | Bai | Fruit skin at 15 days after flowering | 75.23 |
| SAMN15577524 | Cucumis sativus | Lv | Fruit skin at 15 days after flowering | 235.98 |
|
| PRJNA678478: Transcriptome profiling of fruit peels with different colors (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN16803070 | Cucumis sativus | L14 | Yellow mature peel | 52.28 |
| SAMN16803071 | Cucumis sativus | L14 | Green-white young peel | 57.39 |
| SAMN16803072 | Cucumis sativus | L19 | White mature peel | 112.31 |
| SAMN16803073 | Cucumis sativus | L19 | Green-white young peel | 120.7 |
|
| PRJNA707246: Transcriptome profiling of yellow and white fruit flesh (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN18192479 | Cucumis sativus | NA | Yellow fruit flesh at 10 days after pollination | 558.92 |
| SAMN18192488 | Cucumis sativus | NA | White fruit flesh at 10 days after pollination | 589.88 |
| SAMN18192482 | Cucumis sativus | NA | Yellow fruit flesh at 20 days after pollination | 809.31 |
| SAMN18192491 | Cucumis sativus | NA | White fruit flesh at 20 days after pollination | 855.51 |
| SAMN18192485 | Cucumis sativus | NA | Yellow fruit flesh at 30 days after pollination | 340.5 |
| SAMN18192494 | Cucumis sativus | NA | White fruit flesh at 30 days after pollination | 436.58 |
|
| PRJNA817515: Transcriptomes of fruit flesh and peel (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN26791361 | Cucumis sativus | Chuichung | Peel of ripe fruit | 188.49 |
| SAMN26791363 | Cucumis sativus | White Dadagi | Peel of ripe fruit | 63.57 |
| SAMN26791365 | Cucumis sativus | Mini | Peel of ripe fruit | 65.91 |
| SAMN26791362 | Cucumis sativus | Chuichung | Flesh of ripe fruit | 177.65 |
| SAMN26791364 | Cucumis sativus | White Dadagi | Flesh of ripe fruit | 67.54 |
| SAMN26791366 | Cucumis sativus | Mini | Flesh of ripe fruit | 250.93 |
|
| PRJNA660492: Transcriptome profiling of fruit spine development (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN15951074 | Cucumis sativus | NC072 | Fruit spines at stage II (0.2 cm ovary) | 80.01 |
| SAMN15951077 | Cucumis sativus | NC072 | Fruit spines at stage III (0.35 cm ovary) | 85.67 |
| SAMN15951080 | Cucumis sativus | NC072 | Fruit spines at stage IV (0.65 cm ovary) | 105.76 |
| SAMN15951083 | Cucumis sativus | NC073 | Fruit spines at stage II (0.2 cm ovary) | 91.65 |
| SAMN15951086 | Cucumis sativus | NC073 | Fruit spines at stage III (0.35 cm ovary) | 103.31 |
| SAMN15951089 | Cucumis sativus | NC073 | Fruit spines at stage IV (0.65 cm ovary) | 117.11 |
|
| PRJNA852610: Transcriptome profiling of fruit spine (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN29336066 | Cucumis sativus | WZ1 | Fruit spine at 8 days before anthesis | 149.8 |
| SAMN29336069 | Cucumis sativus | WZ1 | Fruit spine at anthesis | 166.83 |
| SAMN29336072 | Cucumis sativus | WZ1 | Fruit spine at 8 days after anthesis | 343.85 |
|
| PRJNA552914: Trancriptome profiling of homo- and hetero-grafted plants (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN12221401 | Cucumis sativus | Xintaimici | Leaf of homografting plants (cucumber grafted on cucumber) | 116.12 |
| SAMN12221407 | Cucumis sativus | Xintaimici | Leaf of heterografting plants (cucumber grafted on C. moschata) | 144.86 |
| SAMN12221404 | Cucumis sativus | Xintaimici | Root of homografting plants (cucumber grafted on cucumber) | 154.87 |
| SAMN12221416 | Cucumis sativus | Xintaimici | Root of heterografting plants (C. moschata grafted on cucumber) | 144.8 |
|
| PRJNA317163: Grafting changed silicon metabolism and expression of bloom-forming related genes (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04600319 | Cucumis sativus | Shannong No.5 | Pericarp of non-grafted cucumber (with sparse bloom) | 146.44 |
| SAMN04600321 | Cucumis sativus | Shannong No.5 | Pericarp of non-grafted cucumber treated with 1.7mM silicon for 2 hours (with dense bloom) | 90.41 |
| SAMN04600323 | Cucumis sativus | Shannong No.5 | Pericarp of self-grafted cucumber (with sparse bloom) | 75.16 |
| SAMN04600325 | Cucumis sativus | Shannong No.5 | Pericarp of self-grafted cucumber treated with 1.7mM silicon for 2 hours (with dense bloom) | 86.06 |
| SAMN04600327 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3212' (with sparse bloom) | 77.3 |
| SAMN04600330 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3212' and treated with 1.7mM silicon for 2 hours (with least bloom) | 80.23 |
| SAMN04600332 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3225' (with sparse bloom) | 98.25 |
| SAMN04600334 | Cucumis sativus | Shannong No.5 | Pericarp of cucumber grafted onto pumpkin '3225' and treated with 1.7mM silicon for 2 hours (with dense bloom) | 69.19 |
|
| PRJNA612596: Transcriptomes of virescent leaf and green leaf (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14377560 | Cucumis sativus | 104Y | The first true leaf of virescent leaf mutant | 79.73 |
| SAMN14377563 | Cucumis sativus | EC1 | The first true leaf of wild type plant (green leaf) | 64.51 |
|
| PRJNA312872: Transcriptome atlas of cucumber (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04530052 | Cucumis sativus | 9930 | Flesh of unfertilized ovary | 320.17 |
| SAMN04530054 | Cucumis sativus | 9930 | Flesh of 1-week-old fruit | 326.18 |
| SAMN04530056 | Cucumis sativus | 9930 | Flesh of 2-week-old fruit | 282.34 |
| SAMN04530058 | Cucumis sativus | 9930 | Flesh of 3-week-old fruit | 465.78 |
| SAMN04530051 | Cucumis sativus | 9930 | Peel of unfertilized ovary | 71.73 |
| SAMN04530053 | Cucumis sativus | 9930 | Peel of 1-week-old fruit | 166.56 |
| SAMN04530055 | Cucumis sativus | 9930 | Peel of 2-week-old fruit | 89.32 |
| SAMN04530057 | Cucumis sativus | 9930 | Peel of 3-week-old fruit | 86.03 |
| SAMN04530050 | Cucumis sativus | 9930 | Unfertilized ovary (not grew) | 148.85 |
| SAMN04530047 | Cucumis sativus | 9930 | Female flower | 71.98 |
| SAMN04530049 | Cucumis sativus | 9930 | Male flower | 60.09 |
| SAMN04530048 | Cucumis sativus | 9930 | Male flower bud | 71.98 |
| SAMN04530038 | Cucumis sativus | 9930 | Cotyledon of 4-week-old seedlings | 143.46 |
| SAMN04530037 | Cucumis sativus | 9930 | Hypocotyl of 4-week-old seedlings | 296.32 |
| SAMN04530036 | Cucumis sativus | 9930 | Root of 4-week-old seedlings | 273.03 |
| SAMN04530039 | Cucumis sativus | 9930 | True Leaf of 4-week-old seedlings | 164.03 |
| SAMN04530042 | Cucumis sativus | 9930 | Young Leaf | 76.96 |
| SAMN04530044 | Cucumis sativus | 9930 | Old leaf | 179.15 |
| SAMN04530043 | Cucumis sativus | 9930 | Petiole of young leaf | 175.18 |
| SAMN04530045 | Cucumis sativus | 9930 | Petiole of old leaf | 316.86 |
| SAMN04530040 | Cucumis sativus | 9930 | Root | 332.58 |
| SAMN04530041 | Cucumis sativus | 9930 | Stem | 287.68 |
| SAMN04530046 | Cucumis sativus | 9930 | Tendril | 201.27 |
|
| PRJNA752681: Transcriptomes of a dark green genotype (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN20604789 | Cucumis sativus | DG | Leaf blade | 55.36 |
| SAMN20604791 | Cucumis sativus | DG | Petiole | 114.28 |
| SAMN20604790 | Cucumis sativus | DG | Stem | 156.46 |
|
| PRJNA80169: Transcriptomes of different cucumber tissues (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN00738224 | Cucumis sativus | Chinese Long | Ovary | 124.3 |
| SAMN00738223 | Cucumis sativus | Chinese Long | Expanded ovary under fertilization (7 days after flowering) | 108.28 |
| SAMN00738222 | Cucumis sativus | Chinese Long | Expanded ovary not fertilized (7 days after flowering) | 453.54 |
| SAMN00738220 | Cucumis sativus | Chinese Long | Female flower | 104.36 |
| SAMN00738221 | Cucumis sativus | Chinese Long | Male flower | 95.17 |
| SAMN00738225 | Cucumis sativus | Chinese Long | Root | 332.83 |
| SAMN00738219 | Cucumis sativus | Chinese Long | Stem | 97.29 |
| SAMN00738218 | Cucumis sativus | Chinese Long | Leaf | 78.21 |
| SAMN00738226 | Cucumis sativus | Chinese Long | Tendril | 108.58 |
| SAMN00738227 | Cucumis sativus | Chinese Long | Base part of tendril | 121.72 |
|
| PRJNA773731: Transcriptomes of apical pistils in wild-type and mutants (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN22504570 | Cucumis sativus | Xintaimici | Apical pistils containing stigmas and styles at anthesis | 82.16 |
| SAMN22504567 | Cucumis sativus | Csalc-/- | Apical pistils containing stigmas and styles at anthesis | 86 |
| SAMN22504573 | Cucumis sativus | Csspt-/- | Apical pistils containing stigmas and styles at anthesis | 77.67 |
| SAMN22504565 | Cucumis sativus | CssptCsalc-/- | Apical pistils containing stigmas and styles at anthesis | 74.65 |
|
| PRJNA510369: Transcriptome of lateral bud of CsBRC1 RNAi line (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN10602942 | Cucumis sativus | CsBRC1-RNAi | Lateral bud | 71.24 |
| SAMN10602932 | Cucumis sativus | R1461 | Lateral bud | 150.38 |
|
| PRJNA700062: Transcriptomes of Cshec2 CRISPR mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17821603 | Cucumis sativus | Cshec2 CRISPR mutant | Female bud at 7 days before anthesis | 113.05 |
| SAMN17821606 | Cucumis sativus | XTMC | Female bud at 7 days before anthesis | 140.68 |
|
| PRJNA685868: Transcriptomes of albino mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17098952 | Cucumis sativus | albino mutant | Cotyledon of 7-day-old seedling | 122.05 |
| SAMN17098955 | Cucumis sativus | g32 | Cotyledon of 7-day-old seedling | 121.51 |
|
| PRJNA402017: Transcriptome of young fruits of CsFUL1 overexpression line (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN07614792 | Cucumis sativus | R1407 | Young fruits at 4 days before anthesis (long fruit) | 246.34 |
| SAMN07614794 | Cucumis sativus | CsFUL1 overexpression line | Young fruits at 4 days before anthesis (short fruit) | 134.84 |
|
| PRJNA540430: Transcriptome of fruit of sf2 mutant (short-fruit) (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11536744 | Cucumis sativus | 406 | Fruit at 0 days after anthesis | 115.58 |
| SAMN11536742 | Cucumis sativus | sf2 mutant | Fruit at 0 days after anthesis | 174.68 |
|
| PRJNA541993: Transcriptome of fruit peel of an irregularly striped rind mutant (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN11606053 | Cucumis sativus | CCMC | Fruit peel at 10 days after post pollination | 111.07 |
| SAMN11606056 | Cucumis sativus | ist mutant | Fruit peel at 10 days after post pollination | 75.88 |
|
| PRJNA685586: Leaf transcriptomes of multiple trichome (mt) mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN17088088 | Cucumis sativus | CCMC | The first true leaf | 71.95 |
| SAMN17088091 | Cucumis sativus | mt mutant | The first true leaf | 81.78 |
|
| PRJNA342056: Transcriptomes of CsIND-RNAi lines (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN05735036 | Cucumis sativus | CsIND-RNAi | Leaf vein | 82.17 |
| SAMN05735041 | Cucumis sativus | R1461 | Leaf vein | 46.21 |
| SAMN05735039 | Cucumis sativus | CsIND-RNAi | Young fruit at 4 d before anthesis | 117 |
| SAMN05735037 | Cucumis sativus | R1461 | Young fruit at 4 d before anthesis | 141.66 |
|
| PRJNA672817: Transcriptome profiling of micro-plant (mp) mutant (strand-specific) | Download | Show/hide expression |
|
| PRJNA428976: Transcriptomes of young ovaries in the round leaf mutant (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08326585 | Cucumis sativus | Round leaf (rl) mutant | Young ovaries at 4 d before anthesis | 211.8 |
| SAMN08326588 | Cucumis sativus | 649 | Young ovaries at 4 d before anthesis | 241.38 |
|
| PRJNA382994: Transcriptome profiling of mosaic (MSC) mitochondrial mutants (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06768506 | Cucumis sativus | B | Shoots (cut off 0.5 cm below the cotyledons) | 125.81 |
| SAMN06768508 | Cucumis sativus | MSC3 | Shoots (cut off 0.5 cm below the cotyledons) | 147.57 |
| SAMN06768510 | Cucumis sativus | MSC12 | Shoots (cut off 0.5 cm below the cotyledons) | 158.96 |
| SAMN06768512 | Cucumis sativus | MSC16 | Shoots (cut off 0.5 cm below the cotyledons) | 177.16 |
|
| PRJNA765045: Transcriptome profiling of reciprocal hybrids (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN21542188 | Cucumis sativus | ST8-4x9930-3 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 89.13 |
| SAMN21542191 | Cucumis sativus | 9930-3xST8-4 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 79.34 |
| SAMN21542194 | Cucumis sativus | ST8-2xGY14-15 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 71.39 |
| SAMN21542197 | Cucumis sativus | GY14-15xST8-2 | Apical meristem and young leaf from hybrids with significant reciprocal effects | 78.07 |
| SAMN21542200 | Cucumis sativus | ST8-4xTMG1-5 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 91.68 |
| SAMN21542203 | Cucumis sativus | TMG1-5xST8-4 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 97.84 |
| SAMN21542206 | Cucumis sativus | ST8-4xGY14-15 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 77.29 |
| SAMN21542209 | Cucumis sativus | GY14-15xST8-4 | Apical meristem and young leaf from hybrids with no significant reciprocal effects | 77.43 |
|
| PRJNA428292: Transcriptomes of cucumber ovaries inhibited by dominant fruits (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08286996 | Cucumis sativus var. sativus | Elem female | Ovary at 1 day after pollination in presence of older fruits (f+1) | 187.69 |
| SAMN08286998 | Cucumis sativus var. sativus | Elem female | Ovary at 1 DPA, no pollination (S+1) | 250.04 |
| SAMN08287001 | Cucumis sativus var. sativus | Elem female | Ovary at 1 day after pollination (F+1) | 189.84 |
| SAMN08287004 | Cucumis sativus var. sativus | Elem female | Ovary at anthesis | 158.98 |
|
| PRJNA431715: Transcriptomes of ovaries and pericarps from numerous-spine and few-spine inbred lines (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN08398980 | Cucumis sativus | NCG122 | Pericarp on the day of flowering of numerous fruit spine line | 104.32 |
| SAMN08398977 | Cucumis sativus | NCG122 | Ovary at 6 days before flowering of numerous fruit spine line | 145.25 |
| SAMN08398986 | Cucumis sativus | NCG121 | Pericarp on the day of flowering of few fruit spine line | 128.87 |
| SAMN08398983 | Cucumis sativus | NCG121 | Ovary at 6 days before flowering of few fruit spine line | 124.94 |
|
| PRJNA613672: Transcriptome profiling of ovary culture-induced embryogenesis (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN14414632 | Cucumis sativus | SG033 | Fresh unpollinated ovaries cultured for 0 d | 176.38 |
| SAMN14414629 | Cucumis sativus | SG033 | Ovules cultured for 2 d | 232.53 |
| SAMN14414626 | Cucumis sativus | SG033 | Embryos cultured for 10 d | 225.67 |
| SAMN14414623 | Cucumis sativus | SG033 | Embryos cultured for 20 d | 224.53 |
| SAMN14414621 | Cucumis sativus | SG033 | Embryos cultured for 30 d | 234.14 |
| SAMN14414646 | Cucumis sativus | SG033 | Shoots after 60 d of culture | 287.05 |
|
| PRJDB6130: Hydrotropism-related gene expression in roots exposed to different gravitational conditions (strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMD00089537 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions without hydrostimulation | 69.68 |
| SAMD00089538 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions without hydrostimulation | 68.42 |
| SAMD00089539 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to hydrostimulation | 77.67 |
| SAMD00089540 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to hydrostimulation | 80.91 |
| SAMD00089541 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to H2O saturation | 72.94 |
| SAMD00089542 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to H2O saturation | 76.53 |
| SAMD00089543 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots from germinated cucumber seedlings exposed to hydrostimulation under clinostat conditions for 4 h | 76.77 |
| SAMD00089544 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots from germinated cucumber seedlings exposed to hydrostimulation under clinostat conditions for 4 h | 71.75 |
| SAMD00089545 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots that bent to the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 69.18 |
| SAMD00089546 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots that bent to the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 71.83 |
| SAMD00089547 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Wet side of longitudinally halved roots that bent away from the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 67.97 |
| SAMD00089548 | Cucumis sativus var. sativus | Shinkasyuu-jibai | Dry side of longitudinally halved roots that bent away from the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h | 68.65 |
|
| PRJNA271595: Transcriptome profiling of root development (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN03275394 | Cucumis sativus | Gy14 | Root elongation zone | 70.9 |
| SAMN03275412 | Cucumis sativus | Gy14 | Root meristematic zone | 42.7 |
| SAMN03275424 | Cucumis sativus | Gy14 | Root differentiation zone | 263.84 |
|
| PRJNA319011: Transcriptome profiles of seed from fruit at different developmental stages (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN04867895 | Cucumis sativus | Marketmore | Seed at 28 days after pollination | 31.97 |
| SAMN04867896 | Cucumis sativus | Marketmore | Seed at 37 days after pollination | 69.49 |
| SAMN04867897 | Cucumis sativus | Marketmore | Seed at 45 days after pollination | 170.37 |
| SAMN04867898 | Cucumis sativus | Marketmore | Seed at 60 days after pollination | 310.27 |
|
| PRJNA359788: Transcriptomes of cucumber lines with different sex types (non-strand-specific; Publication) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN06198176 | Cucumis sativus | B10 | Shoot apex from monoecious B10 cucumber line - male | 163.96 |
| SAMN06198221 | Cucumis sativus | 859 | Shoot apex from androecious 859 cucumber line - male | 108.63 |
| SAMN06198177 | Cucumis sativus | Gy3 | Shoot apex from gynoecious Gy3 cucumber line - female | 164.89 |
| SAMN06198244 | Cucumis sativus | 2gg | Shoot apex from gynoecious 2gg cucumber line - female | 132.79 |
| SAMN06198219 | Cucumis sativus | Hgy3 | Shoot apex from hermaphrodite Hgy3 cucumber line - hermaphrodite | 120.31 |
| SAMN06198226 | Cucumis sativus | LH | Shoot apex from andromonoecious LH cucumber line - hermaphrodite | 143.37 |
|
| PRJNA827999: Transcriptome profiling of shoot apex in determinate/indeterminate growth genotypes (non-strand-specific) | Download | Show/hide expression |
| Sample ID | Species | Genotype | Description | Expression (FPKM) |
| SAMN27628251 | Cucumis sativus | D82 | Shoot apex of the first expanding leaf from the determinate growth genotype | 83.11 |
| SAMN27628254 | Cucumis sativus | CCMC | Shoot apex of the first expanding leaf from the indeterminate growth genotype | 79.21 |
| SAMN27628252 | Cucumis sativus | D82 | Shoot apex of the third expanding leaf from the determinate growth genotype | 126.3 |
| SAMN27628255 | Cucumis sativus | CCMC | Shoot apex of the third expanding leaf from the indeterminate growth genotype | 130.71 |
| SAMN27628253 | Cucumis sativus | D82 | Shoot apex of the sixth expanding leaf from the determinate growth genotype | 200.99 |
| SAMN27628256 | Cucumis sativus | CCMC | Shoot apex of the sixth expanding leaf from the indeterminate growth genotype | 163.64 |
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