; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Expression of Cucsat.G3868 [Cucumber (B10) v3]

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PRJNA376073: Transcriptome responses to GA3 (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SRX2577785Cucumis sativus13_3BShoot apices without GA3 treatment142.8
SRX2577783Cucumis sativus13_3BShoot apices treated with GA3 for 6 h138.25
SRX2577781Cucumis sativus13_3BShoot apices treated with GA3 for 12 h151.32
PRJNA613788: Transcriptome response to sugar treatment (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN14419958Cucumis sativusZKNon-pollinated fruit315.71
SAMN14419952Cucumis sativusZKFruit at one day after anthesis treated with fructose323.8
SAMN14419954Cucumis sativusZKFruit at one day after anthesis treated with glucose335.49
SAMN14419956Cucumis sativusZKFruit at one day after anthesis treated with sucrose332.85
PRJNA667293: Transcriptome profiling of lateral root development regulated by GA3 (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN16365205Cucumis sativusDaqingbaRoots of seedlings with mock treatment at 2 days after germination299.64
SAMN16365207Cucumis sativusDaqingbaRoots of seedlings treated with 50 uM GA3 at 2 days after germination324.44
SAMN16365210Cucumis sativusDaqingbaRoots of seedlings with mock treatment at 3 days after germination376.59
SAMN16365213Cucumis sativusDaqingbaRoots of seedlings treated with 50 uM GA3 at 3 days after germination387.72
SAMN16365216Cucumis sativusDaqingbaRoots of seedlings with mock treatment at 5 days after germination475.1
SAMN16365219Cucumis sativusDaqingbaRoots of seedlings treated with 50 uM GA3 at 5 days after germination468.58
PRJNA782544: Transcriptome responses to ethrel (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN23383751Cucumis sativusXinchun No. 4Explants treated with 0.5 uM ethrel for 48 hours275.21
SAMN23383748Cucumis sativusXinchun No. 4Explants treated with distilled water for 48 hours307.47
PRJNA316747: Transcriptomes of cucumber roots inoculated by AMF (Rhizophagus irregularis) under low temperature (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN04589924Cucumis sativusZhongnong No. 26Root of non-inoculated plant under normal temperature269.12
SAMN04589926Cucumis sativusZhongnong No. 26Root of plant inoculated with AMF R. irregularis under normal temperature257.66
SAMN04589925Cucumis sativusZhongnong No. 26Root of non-inoculated plant under low temperature309.47
SAMN04589927Cucumis sativusZhongnong No. 26Root of plant inoculated with AMF R. irregularis under low temperature287.99
PRJNA438923: Transcriptome responses to chilling stress (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN08731966Cucumis sativusCu-01Leaves of untreated plants157.53
SAMN08731973Cucumis sativusCu-01Leaves of plants exposed to an air temperature of 6℃ for 2 h166.14
SAMN08731970Cucumis sativusCu-01Leaves of plants exposed to an air temperature of 6℃ for 6 h164.18
SAMN08731967Cucumis sativusCu-01Leaves of plants exposed to an air temperature of 6℃ for 12 h178.29
PRJNA701131: Transcriptome responses of grafted cucumber to cold stress (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN17848873Cucumis sativusJinyou 35Leaves of cucumber grafted on pumpkin under normal temperature (25 ℃)275.13
SAMN17848870Cucumis sativusJinyou 35Leaves of homografted cucumber under normal temperature (25 ℃)256.69
SAMN17848879Cucumis sativusJinyou 35Leaves of cucumber grafted on pumpkin under cold temperature (5 ℃)218.35
SAMN17848876Cucumis sativusJinyou 35Leaves of homografted cucumber under cold temperature (5 ℃)192.58
PRJNA817708: Transcriptome responses to cold stress (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN26806305Cucumis sativusCT90Leaf of tolerant line at 24h after cold treatment of 6 C163.4
SAMN26806311Cucumis sativusCT57Leaf of sensitive line at 24h after cold treatment of 6 C136.55
SAMN26806308Cucumis sativusCT90Root of tolerant line at 24h after cold treatment of 6 C207.31
SAMN26806314Cucumis sativusCT57Root of sensitive line at 24h after cold treatment of 6 C198.28
PRJNA720243: Transcriptome response of grafted cucumber to drought stress (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN18643059Cucumis sativusEC1Leaf of homografted cucumber plant under control conditions283.33
SAMN18643060Cucumis sativusEC1Leaf of homografted cucumber plant under drought stress238.37
SAMN18643061Cucumis sativusEC1Leaf of cucumber plant grafted onto Cucurbits moschata under control conditions246.18
SAMN18643062Cucumis sativusEC1Leaf of cucumber plant grafted onto Cucurbits moschata under drought stress205.18
PRJEB7612: Transcriptome response to silicon treatment (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMEA3105050Cucumis sativusB10Leaves and stems of untreated plants190.61
SAMEA3105054Cucumis sativusB10Leaves and stems of plants under silicon treatment161.55
PRJNA307279: Transcriptome profiles of grafted plants under Pi stress (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN04457411Cucumis sativusChinese LongDeveloping leaf of homo-grafted cucumber plants (with mature leaves removed) under +Pi for 24 h241.53
SAMN04457412Cucumis sativusChinese LongDeveloping leaf of homo-grafted cucumber plants (with mature leaves removed) under -Pi for 24 h261.75
SAMN04457417Cucumis sativusChinese LongDeveloping leaf of homo-grafted cucumber plants under +Pi for 24 h277.35
SAMN04457418Cucumis sativusChinese LongDeveloping leaf of homo-grafted cucumber plants under -Pi for 24 h271.59
SAMN04457423Cucumis sativusChinese LongDeveloping leaf of non-grafted cucumber plants under +Pi for 24 h272.33
SAMN04457424Cucumis sativusChinese LongDeveloping leaf of non-grafted cucumber plants under -Pi for 24 h299.41
SAMN04457413Cucumis sativusChinese LongShoot apex of homo-grafted cucumber plants (with mature leaves removed) under +Pi for 24 h235.44
SAMN04457414Cucumis sativusChinese LongShoot apex of homo-grafted cucumber plants (with mature leaves removed) under -Pi for 24 h243.59
SAMN04457419Cucumis sativusChinese LongShoot apex of homo-grafted cucumber plants under +Pi for 24 h259.98
SAMN04457420Cucumis sativusChinese LongShoot apex of homo-grafted cucumber plants under -Pi for 24 h253.51
SAMN04457425Cucumis sativusChinese LongShoot apex of non-grafted cucumber plants under +Pi for 24 h261.8
SAMN04457426Cucumis sativusChinese LongShoot apex of non-grafted cucumber plants under -Pi for 24 h252.16
SAMN04457415Cucumis sativusChinese LongRoot of homo-grafted cucumber plants (with stock leaves removed) under +Pi for 24 h248.3
SAMN04457416Cucumis sativusChinese LongRoot of homo-grafted cucumber plants (with stock leaves removed) under -Pi for 24 h267.04
SAMN04457421Cucumis sativusChinese LongRoot of homo-grafted cucumber plants under +Pi for 24 h236.08
SAMN04457422Cucumis sativusChinese LongRoot of homo-grafted cucumber plants under -Pi for 24 h243.53
SAMN04457427Cucumis sativusChinese LongRoot of non-grafted cucumber plants under +Pi for 24 h246.57
SAMN04457428Cucumis sativusChinese LongRoot of non-grafted cucumber plants under -Pi for 24 h280.62
SAMN04457397Cucumis sativusChinese longLamina under +Pi for 12 h234.57
SAMN04457398Cucumis sativusChinese longLamina under -Pi for 12 h265.22
SAMN04457399Cucumis sativusChinese longMajor vein under +Pi for 12 h332.38
SAMN04457400Cucumis sativusChinese longMajor vein under -Pi for 12 h361.38
SAMN04457401Cucumis sativusChinese longPetiole vascular tissue under +Pi for 12 h418.66
SAMN04457402Cucumis sativusChinese longPetiole vascular tissue under -Pi for 12 h444.08
SAMN04457403Cucumis sativusChinese longPhloem sap under +Pi for 12 h229
SAMN04457404Cucumis sativusChinese longPhloem sap under -Pi for 12 h348.1
SAMN04457405Cucumis sativusChinese longInternode vascular tissue under +Pi for 12 h316.13
SAMN04457406Cucumis sativusChinese longInternode vascular tissue under -Pi for 12 h343.59
SAMN04457407Cucumis sativusChinese longShoot apex under +Pi for 12 h275.46
SAMN04457408Cucumis sativusChinese longShoot apex under -Pi for 12 h292.06
SAMN04457409Cucumis sativusChinese longRoot under +Pi for 12 h429.57
SAMN04457410Cucumis sativusChinese longRoot under -Pi for 12 h379.32
PRJNA523714: Transcriptome profiling of C. campestris-connected cucumber plant clusters under nitrogen-depleted condition (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN10987397Cucumis sativusSummer StrongLeaves of plants under homogeneous N-replete condition (both cucumber plants supplied with 10 mM KNO3) after 0 hour245.72
SAMN10987421Cucumis sativusSummer StrongLeaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 2 hours188.39
SAMN10987445Cucumis sativusSummer StrongLeaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 8 hours221.11
SAMN10987469Cucumis sativusSummer StrongLeaves of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 48 hours191.79
SAMN10987406Cucumis sativusSummer StrongLeaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 2 hours184.89
SAMN10987430Cucumis sativusSummer StrongLeaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 8 hours269.47
SAMN10987454Cucumis sativusSummer StrongLeaves of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 48 hours206.52
SAMN10987415Cucumis sativusSummer StrongLeaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 2 hours167.97
SAMN10987439Cucumis sativusSummer StrongLeaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 8 hours230.69
SAMN10987463Cucumis sativusSummer StrongLeaves of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 48 hours205.39
SAMN10987400Cucumis sativusSummer StrongRoots of plants under homogeneous N-replete condition (both cucumber plants supplied with 10 mM KNO3) after 0 hour390.03
SAMN10987424Cucumis sativusSummer StrongRoots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 2 hours388.76
SAMN10987448Cucumis sativusSummer StrongRoots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 8 hours373.46
SAMN10987472Cucumis sativusSummer StrongRoots of plants under homogeneous N-deprived environment (both cucumber plants supplied with 10 mM KCl) after 48 hours464.58
SAMN10987409Cucumis sativusSummer StrongRoots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 2 hours302.38
SAMN10987433Cucumis sativusSummer StrongRoots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 8 hours365.13
SAMN10987457Cucumis sativusSummer StrongRoots of plants under heterogeneous N condition (supplied with 10 mM KCl, but the other plant with 10 mM KNO3) for 48 hours448.88
SAMN10987418Cucumis sativusSummer StrongRoots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 2 hours272.26
SAMN10987442Cucumis sativusSummer StrongRoots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 8 hours370.46
SAMN10987466Cucumis sativusSummer StrongRoots of plants under heterogeneous N condition (supplied with 10 mM KNO3, but the other plant with 10 mM KCl) for 48 hours433.63
PRJNA765376: Transcriptome responses to Sulfur (S) fumigation (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN21555952Cucumis sativusChinese LongNon sulfur-fumigated ovaries at 0 days post pollination315.3
SAMN21555953Cucumis sativusChinese LongSulfur-fumigated ovaries at 0 days post pollination283.72
SAMN21555954Cucumis sativusChinese LongNon sulfur-fumigated commercial fruits at 12 days post pollination326.02
SAMN21555955Cucumis sativusChinese LongSulfur-fumigated commercial fruits at 12 days post pollination316.35
SAMN21555950Cucumis sativusChinese LongNon sulfur-fumigated mature leaves188.65
SAMN21555951Cucumis sativusChinese LongSulfur-fumigated mature leaves200.27
SAMN21555948Cucumis sativusChinese LongNon sulfur-fumigated young leaves220.46
SAMN21555949Cucumis sativusChinese LongSulfur-fumigated young leaves205.19
PRJNA634519: Transcriptome response to high temperature stress (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN14998224Cucumis sativusChinese LongLeaves of untreated plants267.24
SAMN14998221Cucumis sativusChinese LongLeaves of plants under heat treatment at 42℃ for 3 hours260.35
SAMN14998218Cucumis sativusChinese LongLeaves of plants under heat treatment at 42℃ for 6 hours227.8
PRJNA748460: Transcriptome profiling of male flower development under heat stress (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN20335859Cucumis sativusB80Anthers of male flowers with lengths of 0-3 mm under normal conditions459.05
SAMN20335871Cucumis sativusB80Anthers of male flowers with lengths of 0-3 mm under heat stress410.75
SAMN20335862Cucumis sativusB80Anthers of male flowers with lengths of 3-6 mm under normal conditions503.82
SAMN20335874Cucumis sativusB80Anthers of male flowers with lengths of 3-6 mm under heat stress440.32
SAMN20335865Cucumis sativusB80Anthers of male flowers with lengths of 6-9 mm under normal conditions545.48
SAMN20335877Cucumis sativusB80Anthers of male flowers with lengths of 6-9 mm under heat stress491.31
SAMN20335868Cucumis sativusB80Anthers of male flowers with lengths of >9 mm under normal conditions535.31
SAMN20335880Cucumis sativusB80Anthers of male flowers with lengths of >9 mm under heat stress472.46
PRJNA380322: Transcriptome responses to temperature and photoperiod (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN06640661Cucumis sativusChinese LongShoot apices from seedlings under low temperature, short day242.42
SAMN06640663Cucumis sativusChinese LongShoot apices from seedlings under high temperature, short day226.83
SAMN06640662Cucumis sativusChinese LongShoot apices from seedlings under low temperature, long day254.08
SAMN06640664Cucumis sativusChinese LongShoot apices from seedlings under high temperature, long day228.24
PRJNA475903: Transcriptome responses to photoperiod treatment (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN09405568Cucumis sativusSWCC8Leaves of plant at 0 day of photoperiod treatment184.11
SAMN09405577Cucumis sativusSWCC8Leaves (mixed) of plants at 7, 14 and 21 days of equal-day treatment189.52
SAMN09405571Cucumis sativusSWCC8Leaves (mixed) of plants at 7, 14 and 21 days of short-day treatment184.26
SAMN09405580Cucumis sativusSWCC8Leaves (mixed) of plants at 37 and 44 days of equal-day treatment192.16
SAMN09405574Cucumis sativusSWCC8Leaves (mixed) of plants at 37 and 44 days of short-day treatment209.74
SAMN09405583Cucumis sativusSWCC8Leaves (mixed) of plants at 52 and 59 days of equal-day treatment195.51
PRJNA476021: Transcriptome responses to different ratios of blue and red light (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN09425165Cucumis sativusHuaqing No. 5Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 5 days265.48
SAMN09425169Cucumis sativusHuaqing No. 5Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 10 days361.51
SAMN09425173Cucumis sativusHuaqing No. 5Shoot tips of plants under treatment with ratio of red to blue light of 2:1 for 15 days243.78
SAMN09425167Cucumis sativusHuaqing No. 5Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 5 days329.24
SAMN09425171Cucumis sativusHuaqing No. 5Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 10 days274.59
SAMN09425175Cucumis sativusHuaqing No. 5Shoot tips of plants under treatment with ratio of red to blue light of 4:1 for 15 days253.81
PRJNA782229: Transcriptome profiling of fruit development under different photoperiod treatment (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SRX13518806Cucumis sativusCC3Fruits at 10 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D)358.23
SRX13518810Cucumis sativusCC3Fruits at 10 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D)304.22
SRX13518829Cucumis sativusCC3Fruits at 20 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D)363.71
SRX13518813Cucumis sativusCC3Fruits at 20 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D)346.29
SRX13518850Cucumis sativusCC3Fruits at 30 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D)320.9
SRX13518816Cucumis sativusCC3Fruits at 30 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D)231.77
SRX13518808Cucumis sativusCC3Fruits at 40 days after pollination from photoperiod-insensitive plants subjected to neutral day treatment (12L/12D)319.54
SRX13518820Cucumis sativusCC3Fruits at 40 days after pollination from photoperiod-insensitive plants subjected to short day treatment (8L/16D)342.62
SRX13518823Cucumis sativusSWCC8Fruits at 10 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D)297.34
SRX13518836Cucumis sativusSWCC8Fruits at 10 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D)262.55
SRX13518826Cucumis sativusSWCC8Fruits at 20 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D)288.46
SRX13518839Cucumis sativusSWCC8Fruits at 20 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D)238.33
SRX13518830Cucumis sativusSWCC8Fruits at 30 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D)237.84
SRX13518843Cucumis sativusSWCC8Fruits at 30 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D)267.96
SRX13518833Cucumis sativusSWCC8Fruits at 40 days after pollination from photoperiod-sensitive plants subjected to neutral day treatment (12L/12D)201.13
SRX13518846Cucumis sativusSWCC8Fruits at 40 days after pollination from photoperiod-sensitive plants subjected to short day treatment (8L/16D)188.85
PRJNA437579: Root transcriptome responses to salt stress (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN08668092Cucumis sativusJinchun No. 2Fresh root apexes (0-2 mm from the root tip) from seedlings without NaCl treatment437.42
SAMN08668098Cucumis sativusJinchun No. 2Fresh root apexes (0-2 mm from the root tip) from seedlings after 24 hours treatment with 75 mM NaCl287.21
PRJNA477930: Transcriptome responses to salt stress and silicon treatment (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN09487602Cucumis sativusJinYou 1Leaves of untreated plants243.2
SAMN09487597Cucumis sativusJinYou 1Leaves of plants treated with silicon for three days257.41
SAMN09487599Cucumis sativusJinYou 1Leaves of plants treated with salt for three days176.58
SAMN09487594Cucumis sativusJinYou 1Leaves of plants treated with salt and silicon for three days200.41
PRJNA511946: Transcriptome response to salt stress (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN10653474Cucumis sativusJinYou 1Roots of non-stressed plants404.46
SAMN10653467Cucumis sativusJinYou 1Roots of plants under salt stress for 3 days335.43
PRJNA524275: Transcriptome profiling of C. campestris-connected cucumber plant clusters under salt stress (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN11020240Cucumis sativusJinyou 35Leaves, both cucumber plants were mock treated for 12/24 h131.22
SAMN11020243Cucumis sativusJinyou 35Leaves of plant treated with 50 mM NaCl for 12 h, while the other was mock treated133.33
SAMN11020246Cucumis sativusJinyou 35Leaves of mock treated plant, while the other was treated with 50 mM NaCl for 12 h118.03
SAMN11020249Cucumis sativusJinyou 35Leaves, both cucumber plants treated with 50 mM NaCl for 12 h120.69
SAMN11020252Cucumis sativusJinyou 35Leaves of plant treated with 50 mM NaCl for 24 h, while the other was mock treated112.47
SAMN11020255Cucumis sativusJinyou 35Leaves of mock treated plant, while the other was treated with 50 mM NaCl for 24 h123.57
SAMN11020258Cucumis sativusJinyou 35Leaves, both cucumber plants treated with 50 mM NaCl for 24 h127.13
SAMN11020261Cucumis sativusJinyou 35Roots, both cucumber plants were mock treated for 12/24 h352.68
SAMN11020264Cucumis sativusJinyou 35Roots of plant treated with 50 mM NaCl for 12 h, while the other was mock treated367.62
SAMN11020267Cucumis sativusJinyou 35Roots of mock treated plant, while the other was treated with 50 mM NaCl for 12 h380.75
SAMN11020270Cucumis sativusJinyou 35Roots, both cucumber plants treated with 50 mM NaCl for 12 h367.89
SAMN11020273Cucumis sativusJinyou 35Roots of plant treated with 50 mM NaCl for 24 h, while the other was mock treated339.08
SAMN11020276Cucumis sativusJinyou 35Roots of mock treated plant, while the other was treated with 50 mM NaCl for 24 h329.02
SAMN11020279Cucumis sativusJinyou 35Roots, both cucumber plants treated with 50 mM NaCl for 24 h330.77
PRJNA563457: Transcriptome responses to H2S-regulated salt stress (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN12674486Cucumis sativusChunxiaqiuwangLeaves of untreated plants179.61
SAMN12674489Cucumis sativusChunxiaqiuwangLeaves of plants treated with 200 mM NaCl for 7 days195.15
SAMN12674492Cucumis sativusChunxiaqiuwangLeaves of plants treated with 200 mM NaCl + 15.0 uM NaHS for 7 days202.71
PRJNA678740: Transcriptome responses to long-term waterlogging (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN16811424Cucumis sativusDH2Roots of tolerant plants untreated, cultivated in optimal conditions315.09
SAMN16811567Cucumis sativusDH2Roots of tolerant plants after 7 days of waterlogging and 14 days of recovery period299.48
SAMN16811530Cucumis sativusDH2Roots of non-primed tolerant plants, waterlogged for 7 days only once305.26
SAMN16811572Cucumis sativusDH2Roots of primed tolerant plants; waterlogged twice after 14 days of recovery period196.31
SAMN16811671Cucumis sativusDH4Roots of sensitive plants untreated, cultivated in optimal conditions288.22
SAMN16811697Cucumis sativusDH4Roots of sensitive plants after 7 days of waterlogging and 14 days of recovery period273.78
SAMN16811676Cucumis sativusDH4Roots of non-primed sensitive plants; waterlogged for 7 days only once248.92
SAMN16811714Cucumis sativusDH4Roots of primed sensitive plants; waterlogged twice after 14 days of recovery period194.01
PRJNA799460: Transcriptome responses of hypocotyl to different waterlogging stress treatments (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN25172608Cucumis sativusZaoer-NHypocotyl of cucumber under control conditions for 48 hours206.37
SAMN25172611Cucumis sativusZaoer-NHypocotyl of cucumber under waterlogging for 48 hours226.07
SAMN25172614Cucumis sativusZaoer-NHypocotyl of cucumber treated with 10uM ACC waterlogging for 48 hours216.28
SAMN25172617Cucumis sativusZaoer-NHypocotyl of cucumber treated with 10uM AOA waterlogging for 48 hours246.62
PRJNA844418: Transcriptome responses of different tissues of hypocotyl to waterlogging (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN28817254Cucumis sativusZaoer-NHypocotyl epidermis of cucumber under control conditions for 48 hours304.87
SAMN28817245Cucumis sativusZaoer-NHypocotyl epidermis of cucumber under waterlogging stress for 48 hours270.8
SAMN28817257Cucumis sativusZaoer-NHypocotyl vascular bundles of cucumber under control conditions for 48 hours234.12
SAMN28817248Cucumis sativusZaoer-NHypocotyl vascular bundle of cucumber under waterlogging stress for 48 hours352.2
SAMN28817260Cucumis sativusZaoer-NHypocotyl basal tissue of cucumber under control conditions for 48 hours363.46
SAMN28817251Cucumis sativusZaoer-NHypocotyl basic tissue of cucumber under waterlogging stress for 48 hours292.29
PRJNA563186: Transcriptome responses to Alternaria cucumerina (alternaria leaf spot) (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN12670099Cucumis sativusBeijing204Leaf of susceptible line at 2 days post mock treatment308.6
SAMN12670096Cucumis sativusBeijing204Leaf of susceptible line at 2 days post inoculation with Alternaria cucumerina309.63
SAMN12670105Cucumis sativusBeijing204Leaf of susceptible line at 6 days post mock treatment269.48
SAMN12670102Cucumis sativusBeijing204Leaf of susceptible line at 6 days post inoculation with Alternaria cucumerina258.12
SAMN12670111Cucumis sativusD1322Leaf of resistant line at 2 days post mock treatment361.59
SAMN12670108Cucumis sativusD1322Leaf of resistant line at 2 days post inoculation with Alternaria cucumerina369.54
SAMN12670117Cucumis sativusD1322Leaf of resistant line at 6 days post mock treatment207.94
SAMN12670114Cucumis sativusD1322Leaf of resistant line at 6 days post inoculation with Alternaria cucumerina270.99
PRJNA388584: Transcriptome responses to downy mildew (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN07179433Cucumis sativusPI 197088Leaf of resistant line at 0 h post inoculation with Pseudoperonospora cubensis246.01
SAMN07179434Cucumis sativusPI 197088Leaf of resistant line at 6 h post inoculation with Pseudoperonospora cubensis236.52
SAMN07179435Cucumis sativusPI 197088Leaf of resistant line at 24 h post inoculation with Pseudoperonospora cubensis324.96
PRJNA544259: Transcriptome responses to downy mildew (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN11831000Cucumis sativusHS279Leaves of plants at three days post mock treatment194.52
SAMN11831003Cucumis sativusHS279Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew)198.78
SAMN11831006Cucumis sativusNIL DM4.1.2Leaves of plants at three days post mock treatment242.67
SAMN11831009Cucumis sativusNIL DM4.1.2Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew)192.17
SAMN11831012Cucumis sativusNIL DM4.1.3Leaves of plants at three days post mock treatment218.07
SAMN11831015Cucumis sativusNIL DM4.1.3Leaves of plants at three days post inoculation with Pseudoperonospora cubensis (downy mildew)213.69
PRJNA776553: Garlic volatile diallyl disulfide (DADS) induced cucumber resistance to downy mildew (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN22799462Cucumis sativusCCMCLeaf of plant uninoculated with P. cubensis and not treated with DADS164.61
SAMN22799464Cucumis sativusCCMCLeaf of plant uninoculated with P. cubensis and treated with DADS168.94
SAMN22799450Cucumis sativusCCMCLeaf of plant at 4 h post inoculation of P. cubensis and not treated with DADS180.79
SAMN22799452Cucumis sativusCCMCLeaf of plant at 4 h post inoculation of P. cubensis and treated with DADS195.12
SAMN22799454Cucumis sativusCCMCLeaf of plant at 24 h post inoculation of P. cubensis and not treated with DADS246.16
SAMN22799456Cucumis sativusCCMCLeaf of plant at 24 h post inoculation of P. cubensis and treated with DADS305.98
SAMN22799458Cucumis sativusCCMCLeaf of plant at 48 h post inoculation of P. cubensis and not treated with DADS148.39
SAMN22799460Cucumis sativusCCMCLeaf of plant at 48 h post inoculation of P. cubensis and treated with DADS185.46
PRJNA472169: Transcriptome responses to Fusarium oxysporum (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN09228081Cucumis sativusRijiechengRoots of plants at 0 h post inoculation with Foc227.94
SAMN09228082Cucumis sativusRijiechengRoots of plants at 24 h post inoculation with Foc245.01
SAMN09228083Cucumis sativusRijiechengRoots of plants at 48 h post inoculation with Foc257.41
SAMN09228084Cucumis sativusRijiechengRoots of plants at 96 h post inoculation with Foc284.47
SAMN09228085Cucumis sativusRijiechengRoots of plants at 192 h post inoculation with Foc274.49
PRJNA484083: Transcriptome profiling of cucumber Fusarium wilt resistance induced by intercropping with celery (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN09759444Cucumis sativusFuyangRoots of monocultured resistant plants inoculated with Fusarium oxysporum 128.91
SAMN09759446Cucumis sativusFuyangRoots of resistant plants intercropped with celery and inoculated with Fusarium oxysporum 150.14
SAMN09759443Cucumis sativusTangyanRoots of monocultured susceptible plants inoculated with Fusarium oxysporum 164.81
SAMN09759445Cucumis sativusTangyanRoots of susceptible plants intercropped with celery and inoculated with Fusarium oxysporum 175.4
PRJNA750577: Transcriptome responses of CsRbohB-RNAi lines to Fusarium oxysporum (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN20474027Cucumis sativusCCMCRoots of control plants at 48 hours269.2
SAMN20474030Cucumis sativusCCMCRoots of plants at 48 hours post inoculation with Foc332.83
SAMN20474033Cucumis sativusCsRbohB-RNAiRoots of control RNAi plants at 48 hours274.91
SAMN20474036Cucumis sativusCsRbohB-RNAiRoots of RNAi plants at 48 hours post inoculation with Foc297.13
PRJNA419665: Transcriptome responses to nematode infection (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN08095139Cucumis sativusCC3Roots of susceptible lines at 0 day post inoculation with Meloidogyne incognita338.86
SAMN08095141Cucumis sativusCC3Roots of susceptible lines at 1 day post inoculation with Meloidogyne incognita286.37
SAMN08095143Cucumis sativusCC3Roots of susceptible lines at 2 days post inoculation with Meloidogyne incognita282.54
SAMN08095152Cucumis sativusCC3Roots of susceptible lines at 3 days post inoculation with Meloidogyne incognita252.93
SAMN08095163Cucumis sativusIL10-1Roots of resistant lines at 0 day post inoculation with Meloidogyne incognita320.44
SAMN08095169Cucumis sativusIL10-1Roots of resistant lines at 1 day post inoculation with Meloidogyne incognita348.64
SAMN08095179Cucumis sativusIL10-1Roots of resistant lines at 2 days post inoculation with Meloidogyne incognita339.62
SAMN08095185Cucumis sativusIL10-1Roots of resistant lines at 3 days post inoculation with Meloidogyne incognita325.99
PRJNA445328: Transcriptome responses to biocontrol agent Trichoderma longibrachiatum (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN08779020Cucumis sativusChinese LongLeaves from non-inoculated (with Trichoderma) and non-challenged (with B. cinerea) plants178.99
SAMN08779324Cucumis sativusChinese LongLeaves from inoculated (with Trichoderma) and non-challenged (with B. cinerea) plants240.68
SAMN08394921Cucumis sativusChinese LongLeaves from inoculated (with Trichoderma) and challenged (with B. cinerea) plants282.95
PRJNA285071: Transcriptome responses to Pseudoperonospora cubensis (downy mildew) (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN03737503Cucumis sativusVlaspikLeaf of susceptible line under mock treatment280.14
SAMN03734820Cucumis sativusVlaspikLeaf of susceptible line at 1 day post inoculation with Pseudoperonospora cubensis300.3
SAMN03737532Cucumis sativusVlaspikLeaf of susceptible line at 2 days post inoculation with Pseudoperonospora cubensis307.67
SAMN03737500Cucumis sativusVlaspikLeaf of susceptible line at 3 days post inoculation with Pseudoperonospora cubensis321.65
SAMN03737501Cucumis sativusVlaspikLeaf of susceptible line at 4 days post inoculation with Pseudoperonospora cubensis284.54
SAMN03737502Cucumis sativusVlaspikLeaf of susceptible line at 6 days post inoculation with Pseudoperonospora cubensis259.9
SAMN03737504Cucumis sativusPI 197088Leaf of resistant line under mock treatment218.58
SAMN03737508Cucumis sativusPI 197088Leaf of resistant line at 1 day post inoculation with Pseudoperonospora cubensis249.97
SAMN03737509Cucumis sativusPI 197088Leaf of resistant line at 2 days post inoculation with Pseudoperonospora cubensis224.28
SAMN03737510Cucumis sativusPI 197088Leaf of resistant line at 3 days post inoculation with Pseudoperonospora cubensis228.56
SAMN03737511Cucumis sativusPI 197088Leaf of resistant line at 4 days post inoculation with Pseudoperonospora cubensis197.75
SAMN03737512Cucumis sativusPI 197088Leaf of resistant line at 6 days post inoculation with Pseudoperonospora cubensis164
PRJNA292785: Transcriptome response by physcion and chrysophanol against cucumber powdery mildew (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN03988531Cucumis sativusChangchunmiciLeaves of plants mock treated before inoculation with Sphaerotheca fuliginea for 3 days219.05
SAMN03988533Cucumis sativusChangchunmiciLeaves of plants treated with chrysophano before inoculation with Sphaerotheca fuliginea for 3 days232.45
SAMN03988535Cucumis sativusChangchunmiciLeaves of plants treated with physcion before inoculation with Sphaerotheca fuliginea for 3 days239.75
SAMN03988538Cucumis sativusChangchunmiciLeaves of plants treated with physcion and chrysophano before inoculation with Sphaerotheca fuliginea for 3 days299.25
PRJNA321023: Transcriptome responses to powdery mildew disease (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN04962346Cucumis sativusD8Leaves of susceptible plants at 0 h post inoculation with powdery mildew fungus211.08
SAMN04962349Cucumis sativusD8Leaves of susceptible plants at 48 h post inoculation with powdery mildew fungus191.64
SAMN04962345Cucumis sativusSSL508-28Leaves of resistant plants at 0 h post inoculation with powdery mildew fungus213.91
SAMN04962354Cucumis sativusSSL508-28Leaves of resistant plants at 48 h post inoculation with powdery mildew fungus196.42
PRJNA603869: Transcriptome responses to powdery mildew disease (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN13943385Cucumis sativusQ10Leaf of susceptible line at 24 h post mock treatment138.89
SAMN13943392Cucumis sativusQ10Leaf of susceptible line at 24 h post inoculation with powdery mildew fungus122.76
SAMN13943388Cucumis sativusQ10Leaf of susceptible line at 48 h post mock treatment108.51
SAMN13943395Cucumis sativusQ10Leaf of susceptible line at 48 h post inoculation with powdery mildew fungus125.24
SAMN13943398Cucumis sativusXY09-118Leaf of resistant line at 24 h post mock treatment144.75
SAMN13943405Cucumis sativusXY09-118Leaf of resistant line at 24 h post inoculation with powdery mildew fungus124.57
SAMN13943402Cucumis sativusXY09-118Leaf of resistant line at 48 h post mock treatment108.27
SAMN13943408Cucumis sativusXY09-118Leaf of resistant line at 48 h post inoculation with powdery mildew fungus121.59
PRJNA816625: Transcriptome response to Podosphaera xanthii (powdery mildew) (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN26686559Cucumis sativusB21-a-2-2-2Cotyledon of susceptible line at 0 h post inoculation with Podosphaera xanthii138.12
SAMN26686562Cucumis sativusB21-a-2-1-2Cotyledon of resistant line at 0 h post inoculation with Podosphaera xanthii125.84
SAMN26686565Cucumis sativusB21-a-2-2-2Cotyledon of susceptible line at 6 h post inoculation with Podosphaera xanthii159.46
SAMN26686568Cucumis sativusB21-a-2-1-2Cotyledon of resistant line at 6 h post inoculation with Podosphaera xanthii218.39
PRJNA704621: Transcriptome responses to Pseudomonas syringae pv. lachrymans (Psl) (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN18049944Cucumis sativusB10Leaf of susceptible line without Psl 814/98 inoculation185.22
SAMN18050103Cucumis sativusB10Leaf of susceptible line at 1 day post inoculation with Psl 814/98242.85
SAMN18050492Cucumis sativusB10Leaf of susceptible line at 3 days post inoculation with Psl 814/98252.41
SAMN18050892Cucumis sativusGy14Leaf of resistant line without Psl 814/98 inoculation230.44
SAMN18051058Cucumis sativusGy14Leaf of resistant line at 1 day post inoculation with Psl 814/98257.75
SAMN18051198Cucumis sativusGy14Leaf of resistant line at 3 days post inoculation with Psl 814/98291.06
PRJNA345040: Transcriptomes of peels from fruit differing in age-related resistance to Phytophthora capsici (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN05856085Cucumis sativusVlaspikFruit peel collected at 8 days post pollination (susceptible age)368.59
SAMN05856088Cucumis sativusVlaspikFruit peel collected at 16 days post pollination (resistant age)481.69
SAMN05856091Cucumis sativusGy14Fruit peel collected at 8 days post pollination (susceptible age)373.56
SAMN05856094Cucumis sativusGy14Fruit peel collected at 16 days post pollination (susceptible age)575.93
PRJNA575868: Transcriptomes of fruit peel in response to Phytophthora capsici (fruit rot) (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN12912830Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then under mock treatment for 0 h (Experiment 1)225.78
SAMN12912831Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 1)244.47
SAMN12912832Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 1)223.06
SAMN12912833Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 48 h (Experiment 1)222.07
SAMN12912838Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then under mock treatment for 0 h (Experiment 2)87.67
SAMN12912839Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then under mock treatment for 2 h (Experiment 2)95.08
SAMN12912852Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 2 h (Experiment 2)104.68
SAMN12912840Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then under mock treatment for 4 h (Experiment 2)107.47
SAMN12912853Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 2)97.7
SAMN12912841Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then under mock treatment for 8 h (Experiment 2)88.79
SAMN12912854Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 8 h (Experiment 2)107.35
SAMN12912842Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then under mock treatment for 12 h (Experiment 2)108.53
SAMN12912855Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 12 h (Experiment 2)94.95
SAMN12912843Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then under mock treatment for 18 h (Experiment 2)116.62
SAMN12912856Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 18 h (Experiment 2)108.41
SAMN12912844Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then under mock treatment for 24 h (Experiment 2)112.5
SAMN12912857Cucumis sativusPoinsett 76Fruit peel collected at 8 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 2)86.16
SAMN12912834Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then under mock treatment for 0 h (Experiment 1)198.87
SAMN12912835Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 1)205.55
SAMN12912836Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 1)298.47
SAMN12912837Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 48 h (Experiment 1)257.35
SAMN12912845Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then under mock treatment for 0 h (Experiment 2)89.05
SAMN12912846Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then under mock treatment for 2 h (Experiment 2)98.45
SAMN12912858Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 2 h (Experiment 2)102.17
SAMN12912847Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then under mock treatment for 4 h (Experiment 2)128.42
SAMN12912859Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 4 h (Experiment 2)98.24
SAMN12912848Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then under mock treatment for 8 h (Experiment 2)136.27
SAMN12912860Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 8 h (Experiment 2)103.69
SAMN12912849Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then under mock treatment for 12 h (Experiment 2)160.25
SAMN12912861Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 12 h (Experiment 2)136.19
SAMN12912850Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then under mock treatment for 18 h (Experiment 2)151.88
SAMN12912862Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 18 h (Experiment 2)153.01
SAMN12912851Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then under mock treatment for 24 h (Experiment 2)153.83
SAMN12912863Cucumis sativusPoinsett 76Fruit peel collected at 16 days post pollination and then inoculated with Phytophthora capsici for 24 h (Experiment 2)132.36
PRJNA646644: Transcriptome responses to cucumber green mottle mosaic virus (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN15548822Cucumis sativus229Leaf of healthy control, 3 days113.4
SAMN15548823Cucumis sativus229Leaf of plant at 3 days post inoculation with cucumber green mottle mosaic virus189.74
SAMN15548824Cucumis sativus229Leaf of healthy control, 20 days95.05
SAMN15548825Cucumis sativus229Leaf of plant at 20 days post inoculation with cucumber green mottle mosaic virus197.46
PRJNA701150: Transcriptome responses to cucumber green mottle mosaic virus (CGMMV) (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN17849263Cucumis sativusKSLeaves of healthy plants175.36
SAMN17849283Cucumis sativusKSBright yellow islands from CGMMV-infected leaves exhibiting early post-recovery stage symptoms185.56
SAMN17849285Cucumis sativusKSDark green islands from CGMMV-infected leaves exhibiting early post-recovery stage symptoms173.18
SAMN17849284Cucumis sativusKSBright yellow islands from CGMMV-infected leaves exhibiting late post-recovery stage symptoms159.26
SAMN17849286Cucumis sativusKSDark green islands from CGMMV-infected leaves exhibiting late post-recovery stage symptoms112.69
PRJNA837466: Transcriptome response to Prunus necrotic ringspot virus (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN28204068Cucumis sativusNALeaf of cucumber seedlings at 12 days of mock treatment202.83
SAMN28204071Cucumis sativusNALeaf of cucumber seedlings at 12 days post-inoculation with Prunus necrotic ringspot virus252.89
PRJNA307098: Transcriptome profiling of corolla opening (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN04372266Cucumis sativus6457Corolla opening in the normal ovary at 1 day after labeling376.53
SAMN04372269Cucumis sativus6457Corolla opening in the normal ovary at 3 days after labeling380.71
SAMN04372272Cucumis sativus6457Corolla opening in the normal ovary at 4 days after labeling451.35
SAMN04372275Cucumis sativus6457Corolla opening in the normal ovary at 5 days after labeling231.55
SAMN04372278Cucumis sativus6457Corolla opening in the super ovary at 1 day after labeling325.16
SAMN04372281Cucumis sativus6457Corolla opening in the super ovary at 3 days after labeling402.81
SAMN04372284Cucumis sativus6457Corolla opening in the super ovary at 4 days after labeling416.77
SAMN04372287Cucumis sativus6457Corolla opening in the super ovary at 5 days after labeling433.99
SAMN04372291Cucumis sativus6457Corolla opening in the super ovary at 7 days after labeling412.08
SAMN04372294Cucumis sativus6457Corolla opening in the super ovary at 8 days after labeling265.06
SAMN04372289Cucumis sativus6457Corolla opening in the super ovary at 9 days after labeling230
PRJNA783663: Time-course transcriptome of multicellular trichomes (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN23441956Cucumis sativus3542Cotyledon at 18 hours after seed soaking191.57
SAMN23441959Cucumis sativus3542Cotyledon at 36 hours after seed soaking458.44
SAMN23441962Cucumis sativus3542Cotyledon at 60 hours after seed soaking575.28
SAMN23441965Cucumis sativus3542Cotyledon at 72 hours after seed soaking375.24
SAMN23441968Cucumis sativus3542Cotyledon at 96 hours after seed soaking229.45
PRJNA258122: Transcriptomes of early fruits (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN02988317Cucumis sativus408Early fruits of about 2-4cm216.51
SAMN02988319Cucumis sativus409Early fruits of about 2-4cm236.75
PRJNA381300: Transcriptome profiling of fruits and leaves (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN06673860Cucumis sativusChinese LongLeaf259.04
SAMN06673861Cucumis sativusChinese LongFruit flesh at 10 days post anthesis306.13
SAMN06673862Cucumis sativusChinese LongFruit flesh at 20 days post anthesis427.55
SAMN06673863Cucumis sativusChinese LongFruit flesh at 30 days post anthesis453.46
SAMN06673864Cucumis sativusChinese LongFruit flesh at 40 days post anthesis313.75
SAMN06673866Cucumis sativusChinese LongFruit flesh at 40 days post anthesis, treated with ethylene for 1.5 h337.39
PRJNA448682: Transcriptome profiling of fruit development (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN08862945Cucumis sativusYanBaiFlesh at 3 days after self-pollination328.24
SAMN08862951Cucumis sativusYanBaiFlesh at 6 days after self-pollination336.58
SAMN08862949Cucumis sativusYanBaiFlesh at 9 days after self-pollination366.49
SAMN08862946Cucumis sativusYanBaiPeel at 3 days after self-pollination396.02
SAMN08862944Cucumis sativusYanBaiPeel at 6 days after self-pollination359.09
SAMN08862950Cucumis sativusYanBaiPeel at 9 days after self-pollination294.64
PRJNA517913: Transcriptomes of fruits in lines with different carpel numbers (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN10847189Cucumis sativus32XFruits at anthesis (carpel number=3)258.79
SAMN10847186Cucumis sativusGFCFruits at anthesis (carpel number=5)279.27
PRJNA558838: Transcriptome profiling of fruit development (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN12500541Cucumis sativusGy14Fruit peel at 8 days post pollination307.08
SAMN12500542Cucumis sativusGy14Fruit peel at 16 days post pollination284.78
SAMN12500543Cucumis sativusPoinsett 76Fruit peel at 8 days post pollination225.75
SAMN12500544Cucumis sativusPoinsett 76Fruit peel at 16 days post pollination198.94
PRJNA564950: Transcriptome profiling of mesocarp development (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN12727350Cucumis sativusD8Mesocarps at 0 day after pollination304.01
SAMN12727353Cucumis sativusD8Mesocarps at 3 days after pollination291.12
SAMN12727356Cucumis sativusD8Mesocarps at 6 days after pollination342.91
SAMN12727359Cucumis sativusD8Mesocarps at 9 days after pollination399.82
PRJNA647135: Transcriptomes of fruit skin with different colors (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN15577520Cucumis sativusBaiFruit skin at 15 days after flowering310.36
SAMN15577524Cucumis sativusLvFruit skin at 15 days after flowering278.4
PRJNA678478: Transcriptome profiling of fruit peels with different colors (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN16803070Cucumis sativusL14Yellow mature peel194.12
SAMN16803071Cucumis sativusL14Green-white young peel156.11
SAMN16803072Cucumis sativusL19White mature peel170.12
SAMN16803073Cucumis sativusL19Green-white young peel183.39
PRJNA707246: Transcriptome profiling of yellow and white fruit flesh (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN18192479Cucumis sativusNAYellow fruit flesh at 10 days after pollination251.93
SAMN18192488Cucumis sativusNAWhite fruit flesh at 10 days after pollination239.57
SAMN18192482Cucumis sativusNAYellow fruit flesh at 20 days after pollination233.46
SAMN18192491Cucumis sativusNAWhite fruit flesh at 20 days after pollination221.07
SAMN18192485Cucumis sativusNAYellow fruit flesh at 30 days after pollination315.91
SAMN18192494Cucumis sativusNAWhite fruit flesh at 30 days after pollination254.83
PRJNA817515: Transcriptomes of fruit flesh and peel (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN26791361Cucumis sativusChuichungPeel of ripe fruit249.92
SAMN26791363Cucumis sativusWhite DadagiPeel of ripe fruit161.2
SAMN26791365Cucumis sativusMiniPeel of ripe fruit105.32
SAMN26791362Cucumis sativusChuichungFlesh of ripe fruit113.43
SAMN26791364Cucumis sativusWhite DadagiFlesh of ripe fruit139.54
SAMN26791366Cucumis sativusMiniFlesh of ripe fruit137.14
PRJNA660492: Transcriptome profiling of fruit spine development (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN15951074Cucumis sativusNC072Fruit spines at stage II (0.2 cm ovary)317.18
SAMN15951077Cucumis sativusNC072Fruit spines at stage III (0.35 cm ovary)317.77
SAMN15951080Cucumis sativusNC072Fruit spines at stage IV (0.65 cm ovary)316.57
SAMN15951083Cucumis sativusNC073Fruit spines at stage II (0.2 cm ovary)327.7
SAMN15951086Cucumis sativusNC073Fruit spines at stage III (0.35 cm ovary)335.72
SAMN15951089Cucumis sativusNC073Fruit spines at stage IV (0.65 cm ovary)335.48
PRJNA852610: Transcriptome profiling of fruit spine (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN29336066Cucumis sativusWZ1Fruit spine at 8 days before anthesis316.46
SAMN29336069Cucumis sativusWZ1Fruit spine at anthesis248.17
SAMN29336072Cucumis sativusWZ1Fruit spine at 8 days after anthesis224.37
PRJNA552914: Trancriptome profiling of homo- and hetero-grafted plants (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN12221401Cucumis sativusXintaimiciLeaf of homografting plants (cucumber grafted on cucumber)182.66
SAMN12221407Cucumis sativusXintaimiciLeaf of heterografting plants (cucumber grafted on C. moschata)171.35
SAMN12221404Cucumis sativusXintaimiciRoot of homografting plants (cucumber grafted on cucumber)195.29
SAMN12221416Cucumis sativusXintaimiciRoot of heterografting plants (C. moschata grafted on cucumber)228.38
PRJNA317163: Grafting changed silicon metabolism and expression of bloom-forming related genes (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN04600319Cucumis sativusShannong No.5Pericarp of non-grafted cucumber (with sparse bloom)267.56
SAMN04600321Cucumis sativusShannong No.5Pericarp of non-grafted cucumber treated with 1.7mM silicon for 2 hours (with dense bloom)325.24
SAMN04600323Cucumis sativusShannong No.5Pericarp of self-grafted cucumber (with sparse bloom)229.4
SAMN04600325Cucumis sativusShannong No.5Pericarp of self-grafted cucumber treated with 1.7mM silicon for 2 hours (with dense bloom)296.51
SAMN04600327Cucumis sativusShannong No.5Pericarp of cucumber grafted onto pumpkin '3212' (with sparse bloom)289.74
SAMN04600330Cucumis sativusShannong No.5Pericarp of cucumber grafted onto pumpkin '3212' and treated with 1.7mM silicon for 2 hours (with least bloom)350.03
SAMN04600332Cucumis sativusShannong No.5Pericarp of cucumber grafted onto pumpkin '3225' (with sparse bloom)387.62
SAMN04600334Cucumis sativusShannong No.5Pericarp of cucumber grafted onto pumpkin '3225' and treated with 1.7mM silicon for 2 hours (with dense bloom)265.17
PRJNA612596: Transcriptomes of virescent leaf and green leaf (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN14377560Cucumis sativus104YThe first true leaf of virescent leaf mutant212.05
SAMN14377563Cucumis sativusEC1The first true leaf of wild type plant (green leaf)181.25
PRJNA312872: Transcriptome atlas of cucumber (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN04530052Cucumis sativus9930Flesh of unfertilized ovary372.99
SAMN04530054Cucumis sativus9930Flesh of 1-week-old fruit374.29
SAMN04530056Cucumis sativus9930Flesh of 2-week-old fruit454.82
SAMN04530058Cucumis sativus9930Flesh of 3-week-old fruit457.91
SAMN04530051Cucumis sativus9930Peel of unfertilized ovary281.79
SAMN04530053Cucumis sativus9930Peel of 1-week-old fruit326.2
SAMN04530055Cucumis sativus9930Peel of 2-week-old fruit318.05
SAMN04530057Cucumis sativus9930Peel of 3-week-old fruit380.27
SAMN04530050Cucumis sativus9930Unfertilized ovary (not grew)329.62
SAMN04530047Cucumis sativus9930Female flower206.47
SAMN04530049Cucumis sativus9930Male flower206.13
SAMN04530048Cucumis sativus9930Male flower bud301.91
SAMN04530038Cucumis sativus9930Cotyledon of 4-week-old seedlings296.55
SAMN04530037Cucumis sativus9930Hypocotyl of 4-week-old seedlings439.38
SAMN04530036Cucumis sativus9930Root of 4-week-old seedlings438.94
SAMN04530039Cucumis sativus9930True Leaf of 4-week-old seedlings228.13
SAMN04530042Cucumis sativus9930Young Leaf214.21
SAMN04530044Cucumis sativus9930Old leaf285.69
SAMN04530043Cucumis sativus9930Petiole of young leaf325.06
SAMN04530045Cucumis sativus9930Petiole of old leaf543.69
SAMN04530040Cucumis sativus9930Root289.1
SAMN04530041Cucumis sativus9930Stem368.76
SAMN04530046Cucumis sativus9930Tendril293.96
PRJNA752681: Transcriptomes of a dark green genotype (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN20604789Cucumis sativusDGLeaf blade225.96
SAMN20604791Cucumis sativusDGPetiole362.79
SAMN20604790Cucumis sativusDGStem287.27
PRJNA80169: Transcriptomes of different cucumber tissues (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN00738224Cucumis sativusChinese LongOvary201.82
SAMN00738223Cucumis sativusChinese LongExpanded ovary under fertilization (7 days after flowering)201.44
SAMN00738222Cucumis sativusChinese LongExpanded ovary not fertilized (7 days after flowering)314.86
SAMN00738220Cucumis sativusChinese LongFemale flower353.69
SAMN00738221Cucumis sativusChinese LongMale flower301.62
SAMN00738225Cucumis sativusChinese LongRoot191.76
SAMN00738219Cucumis sativusChinese LongStem172.91
SAMN00738218Cucumis sativusChinese LongLeaf192.48
SAMN00738226Cucumis sativusChinese LongTendril435.28
SAMN00738227Cucumis sativusChinese LongBase part of tendril396.09
PRJNA773731: Transcriptomes of apical pistils in wild-type and mutants (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN22504570Cucumis sativusXintaimiciApical pistils containing stigmas and styles at anthesis242.53
SAMN22504567Cucumis sativusCsalc-/-Apical pistils containing stigmas and styles at anthesis275.26
SAMN22504573Cucumis sativusCsspt-/-Apical pistils containing stigmas and styles at anthesis265.6
SAMN22504565Cucumis sativusCssptCsalc-/-Apical pistils containing stigmas and styles at anthesis288.07
PRJNA510369: Transcriptome of lateral bud of CsBRC1 RNAi line (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN10602942Cucumis sativusCsBRC1-RNAiLateral bud206.31
SAMN10602932Cucumis sativusR1461Lateral bud209.59
PRJNA700062: Transcriptomes of Cshec2 CRISPR mutant (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN17821603Cucumis sativusCshec2 CRISPR mutantFemale bud at 7 days before anthesis243.86
SAMN17821606Cucumis sativusXTMCFemale bud at 7 days before anthesis285.01
PRJNA685868: Transcriptomes of albino mutant (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN17098952Cucumis sativusalbino mutantCotyledon of 7-day-old seedling381.93
SAMN17098955Cucumis sativusg32Cotyledon of 7-day-old seedling293.18
PRJNA402017: Transcriptome of young fruits of CsFUL1 overexpression line (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN07614792Cucumis sativusR1407Young fruits at 4 days before anthesis (long fruit)297.94
SAMN07614794Cucumis sativusCsFUL1 overexpression lineYoung fruits at 4 days before anthesis (short fruit)171.19
PRJNA540430: Transcriptome of fruit of sf2 mutant (short-fruit) (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN11536744Cucumis sativus406Fruit at 0 days after anthesis261.55
SAMN11536742Cucumis sativussf2 mutantFruit at 0 days after anthesis307.22
PRJNA541993: Transcriptome of fruit peel of an irregularly striped rind mutant (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN11606053Cucumis sativusCCMCFruit peel at 10 days after post pollination124.93
SAMN11606056Cucumis sativusist mutantFruit peel at 10 days after post pollination161.84
PRJNA685586: Leaf transcriptomes of multiple trichome (mt) mutant (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN17088088Cucumis sativusCCMCThe first true leaf212.93
SAMN17088091Cucumis sativusmt mutantThe first true leaf199.4
PRJNA342056: Transcriptomes of CsIND-RNAi lines (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN05735036Cucumis sativusCsIND-RNAiLeaf vein250.71
SAMN05735041Cucumis sativusR1461Leaf vein223.22
SAMN05735039Cucumis sativusCsIND-RNAiYoung fruit at 4 d before anthesis242.67
SAMN05735037Cucumis sativusR1461Young fruit at 4 d before anthesis285.75
PRJNA672817: Transcriptome profiling of micro-plant (mp) mutant (strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN16578602Cucumis sativusCCMCLeaf81.89
SAMN16578605Cucumis sativusCCMCStem91.9
SAMN16578608Cucumis sativusCCMCRoot93.26
SAMN16578611Cucumis sativusmpLeaf82.87
SAMN16578614Cucumis sativusmpStem91.3
SAMN16578617Cucumis sativusmpRoot106.44
PRJNA428976: Transcriptomes of young ovaries in the round leaf mutant (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN08326585Cucumis sativusRound leaf (rl) mutantYoung ovaries at 4 d before anthesis173.79
SAMN08326588Cucumis sativus649Young ovaries at 4 d before anthesis172.92
PRJNA382994: Transcriptome profiling of mosaic (MSC) mitochondrial mutants (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN06768506Cucumis sativusBShoots (cut off 0.5 cm below the cotyledons)150.15
SAMN06768508Cucumis sativusMSC3Shoots (cut off 0.5 cm below the cotyledons)139.11
SAMN06768510Cucumis sativusMSC12Shoots (cut off 0.5 cm below the cotyledons)160.7
SAMN06768512Cucumis sativusMSC16Shoots (cut off 0.5 cm below the cotyledons)152.86
PRJNA765045: Transcriptome profiling of reciprocal hybrids (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN21542188Cucumis sativusST8-4x9930-3Apical meristem and young leaf from hybrids with significant reciprocal effects245.2
SAMN21542191Cucumis sativus9930-3xST8-4Apical meristem and young leaf from hybrids with significant reciprocal effects219.85
SAMN21542194Cucumis sativusST8-2xGY14-15Apical meristem and young leaf from hybrids with significant reciprocal effects235.23
SAMN21542197Cucumis sativusGY14-15xST8-2Apical meristem and young leaf from hybrids with significant reciprocal effects240.62
SAMN21542200Cucumis sativusST8-4xTMG1-5Apical meristem and young leaf from hybrids with no significant reciprocal effects247.51
SAMN21542203Cucumis sativusTMG1-5xST8-4Apical meristem and young leaf from hybrids with no significant reciprocal effects258.86
SAMN21542206Cucumis sativusST8-4xGY14-15Apical meristem and young leaf from hybrids with no significant reciprocal effects240.61
SAMN21542209Cucumis sativusGY14-15xST8-4Apical meristem and young leaf from hybrids with no significant reciprocal effects246.7
PRJNA428292: Transcriptomes of cucumber ovaries inhibited by dominant fruits (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN08286996Cucumis sativus var. sativusElem femaleOvary at 1 day after pollination in presence of older fruits (f+1)210.19
SAMN08286998Cucumis sativus var. sativusElem femaleOvary at 1 DPA, no pollination (S+1)256.8
SAMN08287001Cucumis sativus var. sativusElem femaleOvary at 1 day after pollination (F+1)229.28
SAMN08287004Cucumis sativus var. sativusElem femaleOvary at anthesis229.88
PRJNA431715: Transcriptomes of ovaries and pericarps from numerous-spine and few-spine inbred lines (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN08398980Cucumis sativusNCG122Pericarp on the day of flowering of numerous fruit spine line245.35
SAMN08398977Cucumis sativusNCG122Ovary at 6 days before flowering of numerous fruit spine line276.12
SAMN08398986Cucumis sativusNCG121Pericarp on the day of flowering of few fruit spine line310.97
SAMN08398983Cucumis sativusNCG121Ovary at 6 days before flowering of few fruit spine line274.96
PRJNA613672: Transcriptome profiling of ovary culture-induced embryogenesis (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN14414632Cucumis sativusSG033Fresh unpollinated ovaries cultured for 0 d232.31
SAMN14414629Cucumis sativusSG033Ovules cultured for 2 d257.44
SAMN14414626Cucumis sativusSG033Embryos cultured for 10 d206.4
SAMN14414623Cucumis sativusSG033Embryos cultured for 20 d193.8
SAMN14414621Cucumis sativusSG033Embryos cultured for 30 d193.41
SAMN14414646Cucumis sativusSG033Shoots after 60 d of culture200.33
PRJDB6130: Hydrotropism-related gene expression in roots exposed to different gravitational conditions (strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMD00089537Cucumis sativus var. sativusShinkasyuu-jibaiWet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions without hydrostimulation253.53
SAMD00089538Cucumis sativus var. sativusShinkasyuu-jibaiDry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions without hydrostimulation248.02
SAMD00089539Cucumis sativus var. sativusShinkasyuu-jibaiWet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to hydrostimulation277.19
SAMD00089540Cucumis sativus var. sativusShinkasyuu-jibaiDry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to hydrostimulation262.61
SAMD00089541Cucumis sativus var. sativusShinkasyuu-jibaiWet side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to H2O saturation276.03
SAMD00089542Cucumis sativus var. sativusShinkasyuu-jibaiDry side of longitudinally halved roots from cucumber seedlings germinated under stationary conditions and exposed to H2O saturation264.67
SAMD00089543Cucumis sativus var. sativusShinkasyuu-jibaiWet side of longitudinally halved roots from germinated cucumber seedlings exposed to hydrostimulation under clinostat conditions for 4 h291.76
SAMD00089544Cucumis sativus var. sativusShinkasyuu-jibaiDry side of longitudinally halved roots from germinated cucumber seedlings exposed to hydrostimulation under clinostat conditions for 4 h272.08
SAMD00089545Cucumis sativus var. sativusShinkasyuu-jibaiWet side of longitudinally halved roots that bent to the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h269.36
SAMD00089546Cucumis sativus var. sativusShinkasyuu-jibaiDry side of longitudinally halved roots that bent to the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h250.51
SAMD00089547Cucumis sativus var. sativusShinkasyuu-jibaiWet side of longitudinally halved roots that bent away from the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h247.61
SAMD00089548Cucumis sativus var. sativusShinkasyuu-jibaiDry side of longitudinally halved roots that bent away from the water-absorbent plastic side after germinated cucumber seedlings exposed to H2O saturation under clinostat conditions for 4 h267.92
PRJNA271595: Transcriptome profiling of root development (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN03275394Cucumis sativusGy14Root elongation zone400.66
SAMN03275412Cucumis sativusGy14Root meristematic zone317.57
SAMN03275424Cucumis sativusGy14Root differentiation zone443.62
PRJNA319011: Transcriptome profiles of seed from fruit at different developmental stages (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN04867895Cucumis sativusMarketmoreSeed at 28 days after pollination57.9
SAMN04867896Cucumis sativusMarketmoreSeed at 37 days after pollination63.65
SAMN04867897Cucumis sativusMarketmoreSeed at 45 days after pollination177.38
SAMN04867898Cucumis sativusMarketmoreSeed at 60 days after pollination229.94
PRJNA359788: Transcriptomes of cucumber lines with different sex types (non-strand-specific; Publication)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN06198176Cucumis sativusB10Shoot apex from monoecious B10 cucumber line - male240.84
SAMN06198221Cucumis sativus859Shoot apex from androecious 859 cucumber line - male199.3
SAMN06198177Cucumis sativusGy3Shoot apex from gynoecious Gy3 cucumber line - female255.86
SAMN06198244Cucumis sativus2ggShoot apex from gynoecious 2gg cucumber line - female278.66
SAMN06198219Cucumis sativusHgy3Shoot apex from hermaphrodite Hgy3 cucumber line - hermaphrodite272.46
SAMN06198226Cucumis sativusLHShoot apex from andromonoecious LH cucumber line - hermaphrodite154.44
PRJNA827999: Transcriptome profiling of shoot apex in determinate/indeterminate growth genotypes (non-strand-specific)DownloadShow/hide expression
Sample IDSpeciesGenotypeDescriptionExpression (FPKM)
SAMN27628251Cucumis sativusD82Shoot apex of the first expanding leaf from the determinate growth genotype325.71
SAMN27628254Cucumis sativusCCMCShoot apex of the first expanding leaf from the indeterminate growth genotype305.14
SAMN27628252Cucumis sativusD82Shoot apex of the third expanding leaf from the determinate growth genotype304.43
SAMN27628255Cucumis sativusCCMCShoot apex of the third expanding leaf from the indeterminate growth genotype380.77
SAMN27628253Cucumis sativusD82Shoot apex of the sixth expanding leaf from the determinate growth genotype303.88
SAMN27628256Cucumis sativusCCMCShoot apex of the sixth expanding leaf from the indeterminate growth genotype302.19