; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Bhi02G001064 (gene) of Wax gourd (B227) v1 genome

Gene IDBhi02G001064
OrganismBenincasa hispida cv. B227 (Wax gourd (B227) v1)
Descriptionexosome complex component CSL4
Genome locationchr2:31098035..31098253
RNA-Seq ExpressionBhi02G001064
SyntenyBhi02G001064
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR025721 - Exosome complex component, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588300.1 Bifunctional TH2 protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]5.2e-1785.71Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD
        MKEGEEE TEFVTPGEVLG FSD +PG+GAYV NNTVYASLSGFRR I PPTDSSD
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD

KAG7020862.1 Exosome complex component CSL4 [Cucurbita argyrosperma subsp. argyrosperma]5.2e-1785.71Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD
        MKEGEEE TEFVTPGEVLG FSD +PG+GAYV NNTVYASLSGFRR I PPTDSSD
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD

XP_008465048.1 PREDICTED: exosome complex component CSL4 [Cucumis melo]1.0e-1784.21Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDL
        MKEGE+E TEFVTPGE+LG FSDF+PGRGAYV +NTVYASLSGFRR IPPP+DSSDL
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDL

XP_023530831.1 exosome complex component CSL4 [Cucurbita pepo subsp. pepo]5.2e-1785.71Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD
        MKEGEEE TEFVTPGEVLG FSD +PG+GAYV NNTVYASLSGFRR I PPTDSSD
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD

XP_038879159.1 exosome complex component CSL4 [Benincasa hispida]4.4e-24100Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDL
        MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDL
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDL

TrEMBL top hitse value%identityAlignment
A0A0A0L935 Uncharacterized protein9.6e-1782.46Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDL
        MKEGE++ TEFVTPGEVLG FSDF+PGRGAYV +NTVYASLSGFRR I PP+DSSDL
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDL

A0A1S3CMV8 exosome complex component CSL45.1e-1884.21Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDL
        MKEGE+E TEFVTPGE+LG FSDF+PGRGAYV +NTVYASLSGFRR IPPP+DSSDL
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDL

A0A6J1DE54 exosome complex component CSL46.4e-1373.21Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD
        MKE EE  T+FVTPGEVLG  SD + G+GAYV NNTVYASLSGFRR +PPP +SSD
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD

A0A6J1F6G8 exosome complex component CSL42.5e-1785.71Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD
        MKEGEEE TEFVTPGEVLG FSD +PG+GAYV NNTVYASLSGFRR I PPTDSSD
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD

A0A6J1IH52 exosome complex component CSL41.6e-1683.93Show/hide
Query:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD
        MK GEEE TEFVTPGEVLG FSD +PG+GAYV NNTVYASLSGFRR I PPTDSSD
Subjt:  MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G38890.1 Nucleic acid-binding, OB-fold-like protein8.0e-0848.98Show/hide
Query:  TTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD
        TT  VTPG+V+G  ++F+ G+GAYV + T+YASL+G  R + P  +S D
Subjt:  TTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGGCGAGGAAGAGACTACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAATCTTTTCCGACTTCAGACCTGGAAGAGGCGCTTATGTCTTCAACAACACTGT
TTATGCTTCTCTTTCTGGTTTCCGCCGCACTATTCCTCCTCCCACCGACTCTTCGGATCTAGTACAACTCTTTTTCTTCACTCTTTCTGTTTTTTGCTTCATCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAAGGCGAGGAAGAGACTACTGAGTTCGTCACTCCAGGTGAAGTTCTCGGAATCTTTTCCGACTTCAGACCTGGAAGAGGCGCTTATGTCTTCAACAACACTGT
TTATGCTTCTCTTTCTGGTTTCCGCCGCACTATTCCTCCTCCCACCGACTCTTCGGATCTAGTACAACTCTTTTTCTTCACTCTTTCTGTTTTTTGCTTCATCTTTTGA
Protein sequenceShow/hide protein sequence
MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDLVQLFFFTLSVFCFIF