; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Bhi04G001090 (gene) of Wax gourd (B227) v1 genome

Gene IDBhi04G001090
OrganismBenincasa hispida cv. B227 (Wax gourd (B227) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationchr4:34417865..34418102
RNA-Seq ExpressionBhi04G001090
SyntenyBhi04G001090
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5949370.1 hypothetical protein HYC85_011363 [Camellia sinensis]5.9e-2269.62Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +L+ +FITNS   D+TSKDSK+FHVN L CKN T QHFTISAPG SIN DGIHIG S+GIN+L+T I  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

XP_022157387.1 exopolygalacturonase-like [Momordica charantia]3.5e-2272.15Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        SL+ SFITNS  +DITSKDSK+FHV  L C NLT QH  ++APG+SIN DGIHIGRS GIN+L+T+IG GDDCISLGDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

XP_028098562.1 exopolygalacturonase-like [Camellia sinensis]5.9e-2269.62Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +L+ +FITNS   D+TSKDSK+FHVN L CKN T QHFTISAPG SIN DGIHIG S+GIN+L+T I  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

XP_028102428.1 exopolygalacturonase-like [Camellia sinensis]1.3e-2169.62Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +L+ +FITNS    +TSKDSK+FHVN L CKN T QHFTISAPG SIN DGIHIGRS GIN+L+T I  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

XP_038705247.1 exopolygalacturonase-like [Tripterygium wilfordii]4.5e-2265.82Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +++ +FITN   TD+T+KDSK+FHVN L CKN+T QHFT+SAP  SIN DGIHIGRSVG+N+++TDI  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

TrEMBL top hitse value%identityAlignment
A0A4S4DBJ4 Uncharacterized protein2.9e-2269.62Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +L+ +FITNS   D+TSKDSK+FHVN L CKN T QHFTISAPG SIN DGIHIG S+GIN+L+T I  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

A0A6J1DUC6 exopolygalacturonase-like1.7e-2272.15Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        SL+ SFITNS  +DITSKDSK+FHV  L C NLT QH  ++APG+SIN DGIHIGRS GIN+L+T+IG GDDCISLGDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

A0A7J7DIH6 Exopolygalacturonase-like2.2e-2265.82Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +++ +FITN   TD+T+KDSK+FHVN L CKN+T QHFT+SAP  SIN DGIHIGRSVG+N+++TDI  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

A0A7J7H8V2 Uncharacterized protein2.9e-2269.62Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +L+ +FITNS   D+TSKDSK+FHVN L CKN T QHFTISAPG SIN DGIHIG S+GIN+L+T I  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

A0A7J7HA63 Uncharacterized protein6.4e-2269.62Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +L+ +FITNS    +TSKDSK+FHVN L CKN T QHFTISAPG SIN DGIHIGRS GIN+L+T I  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)4.4e-2062.03Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +L+L  +TNS   D+T+ DSK+FHVN + CKNLT + F ISA   SIN DGIHIGRS G+N++NT+I  GDDCISLGDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

Q39766 Polygalacturonase5.4e-1853.16Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +++  F+TN+   DITSKDSK FH+N   CKN+T++   I AP  S N DGIH+G+S G+N++ +DI  GDDCIS+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

Q39786 Polygalacturonase7.0e-1853.16Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +++  F+TN+   DITSKDSK FH+N   CKN+T++   I AP  S N DGIH+G+S G+N++ +DI  GDDCIS+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

Q40312 Polygalacturonase1.8e-1857.33Show/hide
Query:  SFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +F+ NS    +TSKDSK+FHV    CKN+T   FTI+APG+S N DGIH+G+S  + +LNT+IG GDDC+S+GDG
Subjt:  SFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

Q6H9K0 Exopolygalacturonase (Fragment)2.7e-1751.9Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +L+  F+ ++   DITS +SK FH+N L+C+++T QH T++APG SIN DGIH+G S G+ + NT I  GDDCIS+G G
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein7.9e-1753.16Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        S++  FI NS   DI+S D+K+FH+N L  KN+T+ +  I AP +S N DGIH+GRS G+ +LN+ I  GDDCIS+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

AT3G07830.1 Pectin lyase-like superfamily protein1.6e-1749.37Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        S++  F+TN+   DI+S D+K+FH+N +  KN+T  +  I AP  S N DGIH+GRSVG++++N+ I  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

AT3G07840.1 Pectin lyase-like superfamily protein1.8e-1649.37Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        S++  F+ N+   DI+S D+K+FH+N L  KN+T  +  + AP  S N DGIH+GRS G+ +LN+ I  GDDCIS+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

AT3G07850.1 Pectin lyase-like superfamily protein1.4e-1650.63Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +++ + +TNS    ITS +SK FH+N L+CKN+T+    I AP  S+N DGIHIGRS G+N++   I  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG

AT3G14040.1 Pectin lyase-like superfamily protein1.8e-1650.63Show/hide
Query:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG
        +++ + +TNS    ITS +SK FH+N L+CKN+T+    I AP  S+N DGIHIGRS G+N++   I  GDDC+S+GDG
Subjt:  SLKLSFITNS--TDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGTTTGAAGTTAAGCTTTATCACAAATTCGACTGATATAACATCTAAAGATAGCAAGAGCTTTCATGTCAATGCATTGGATTGTAAGAACCTCACCATCCAACA
TTTCACCATAAGTGCACCAGGAAATAGTATTAATATTGATGGAATTCACATTGGTCGATCTGTTGGGATTAATGTCCTTAATACAGATATTGGTATTGGAGATGATTGTA
TCTCACTTGGGGATGGAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAGTTTGAAGTTAAGCTTTATCACAAATTCGACTGATATAACATCTAAAGATAGCAAGAGCTTTCATGTCAATGCATTGGATTGTAAGAACCTCACCATCCAACA
TTTCACCATAAGTGCACCAGGAAATAGTATTAATATTGATGGAATTCACATTGGTCGATCTGTTGGGATTAATGTCCTTAATACAGATATTGGTATTGGAGATGATTGTA
TCTCACTTGGGGATGGAA
Protein sequenceShow/hide protein sequence
MQSLKLSFITNSTDITSKDSKSFHVNALDCKNLTIQHFTISAPGNSINIDGIHIGRSVGINVLNTDIGIGDDCISLGDG