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Bhi06G001041 (gene) of Wax gourd (B227) v1 genome

Gene IDBhi06G001041
OrganismBenincasa hispida cv. B227 (Wax gourd (B227) v1)
DescriptionPhotosystem II CP47 reaction center protein
Genome locationchr6:34410032..34411030
RNA-Seq ExpressionBhi06G001041
SyntenyBhi06G001041
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009521 - photosystem (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042651 - thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8766211.1 Photosystem II CP47 chlorophyll apoprotein [Hordeum vulgare]8.2e-3988.64Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

KAF0893533.1 hypothetical protein E2562_026670, partial [Oryza meyeriana var. granulata]8.2e-3988.64Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

KAF9621399.1 hypothetical protein IFM89_020921 [Coptis chinensis]6.2e-3986.81Show/hide
Query:  LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        L  FGFGAFHVTGLYG GIWVSDPYGLTG+VQ++NPAWGVEGFDPFV GGIASHHIAAAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

VAI53278.1 unnamed protein product [Triticum turgidum subsp. durum]8.2e-3988.64Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

VAI84891.1 unnamed protein product [Triticum turgidum subsp. durum]4.8e-3987.5Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQ +NPAWG EGFDPFVLGGIASHHI AAFVVAGTM YGS  T IELFGPTHYQWD GYFQ
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

TrEMBL top hitse value%identityAlignment
A0A446Y8Q5 Uncharacterized protein2.3e-3987.5Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQ +NPAWG EGFDPFVLGGIASHHI AAFVVAGTM YGS  T IELFGPTHYQWD GYFQ
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

A0A452YMI5 Uncharacterized protein3.9e-3988.64Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

A0A452YMJ0 Uncharacterized protein3.9e-3988.64Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

A0A6G1C1Q6 Uncharacterized protein (Fragment)3.9e-3988.64Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

Q7G3E9 Os10g0356500 protein3.9e-3988.64Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

SwissProt top hitse value%identityAlignment
A4GGD1 Photosystem II CP47 reaction center protein1.1e-3558.78Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------AAF
        FGFGAFHVTGLYG GIWVSDPYGLTGR+Q++NPAWGVEGFDPFV GG+ASHHIA                                           AAF
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------AAF

Query:  VVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        VVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  VVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

A6MMN3 Photosystem II CP47 reaction center protein1.1e-3559.7Show/hide
Query:  LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------
        L  FGFGAFHVTGLYG GIWVSDPYGLTG+VQ+INPAWGVEGFDPFV GGIASHHIA                                           
Subjt:  LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------

Query:  AAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        AAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  AAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

Q09WZ1 Photosystem II CP47 reaction center protein3.0e-3661.07Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------AAF
        FGFGAFHVTGLYG GIWVSDPYGLTGRVQA+NPAWGVEGFDPFV GGIASHHIA                                           AAF
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------AAF

Query:  VVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        VVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  VVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

Q2PMQ9 Photosystem II CP47 reaction center protein1.1e-3558.78Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------AAF
        FGFGAFHVTGLYG GIWVSDPYGLTGR+Q++NPAWGVEGFDPFV GG+ASHHIA                                           AAF
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------AAF

Query:  VVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        VVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  VVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

Q2QD63 Photosystem II CP47 reaction center protein6.1e-3761.19Show/hide
Query:  LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------
        LG FGFGAFHVTGLYG GIWVSDPYGLTGRVQA+NPAWGVEGFDPFV GGIASHHIA                                           
Subjt:  LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------

Query:  AAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        AAFVVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  AAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

Arabidopsis top hitse value%identityAlignment
ATCG00680.1 photosystem II reaction center protein B1.8e-3659.54Show/hide
Query:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------AAF
        FGFGAFHVTGLYG GIWVSDPYGLTG+VQ +NPAWGVEGFDPFV GGIASHHIA                                           AAF
Subjt:  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA-------------------------------------------AAF

Query:  VVAGTMRYGSEITSIELFGPTHYQWDQGYFQ
        VVAGTM YGS  T IELFGPT YQWDQGYFQ
Subjt:  VVAGTMRYGSEITSIELFGPTHYQWDQGYFQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTGGGTTGGTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCTGGGAATATGGGTATCTGATCCTTATGGATTAACCGGAAGGGTACAAGCT
ATAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTTTGGGCGGAATAGCCTCACATCATATTGCAGCAGCTTTTGTTGTTGCCGGAACTATGAGGTAT
GGTTCAGAAATTACCTCGATTGAATTATTTGGGCCCACTCATTATCAATGGGATCAGGGATACTTCCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTGGGTTGGTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCTGGGAATATGGGTATCTGATCCTTATGGATTAACCGGAAGGGTACAAGCT
ATAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTTTGGGCGGAATAGCCTCACATCATATTGCAGCAGCTTTTGTTGTTGCCGGAACTATGAGGTAT
GGTTCAGAAATTACCTCGATTGAATTATTTGGGCCCACTCATTATCAATGGGATCAGGGATACTTCCAGTAA
Protein sequenceShow/hide protein sequence
MRLGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ