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Bhi08G001465 (gene) of Wax gourd (B227) v1 genome

Gene IDBhi08G001465
OrganismBenincasa hispida cv. B227 (Wax gourd (B227) v1)
DescriptionProtein ROOT PRIMORDIUM DEFECTIVE 1
Genome locationchr8:51818417..51818734
RNA-Seq ExpressionBhi08G001465
SyntenyBhi08G001465
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR021099 - Plant organelle RNA recognition domain
IPR045040 - PORR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054949.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa]3.5e-3886.96Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEKF+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

KAE8652910.1 hypothetical protein Csa_022672 [Cucumis sativus]3.5e-3886.96Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEKF+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

XP_011656637.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Cucumis sativus]3.5e-3886.96Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEKF+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

XP_016899452.1 PREDICTED: LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo]3.5e-3886.96Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEKF+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

XP_038886354.1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [Benincasa hispida]1.4e-3990.22Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        YSDMFRIVN  GKKNS+EIELISWKPELAISNIESSACKHGVEPAFSCSLPTT +NSWEKFHEFNASPYVSPY NP GLV+GTKEMEKR VG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

TrEMBL top hitse value%identityAlignment
A0A0A0KEF0 PORR domain-containing protein1.7e-3886.96Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEKF+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

A0A1S4DTX7 LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 11.7e-3886.96Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEKF+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

A0A5D3DGZ3 Protein ROOT PRIMORDIUM DEFECTIVE 11.7e-3886.96Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEKF+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

A0A6J1BXE4 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X24.2e-3784.78Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        YSDMFRIVN  GK+NS+EIEL+SWKPELAIS+IESSA +HGVEPAFSCSLPTT +NSWEKFHEFNASPYVSPYVNP  LV+G+KEMEKRTVG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

A0A6J1C186 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X14.2e-3784.78Show/hide
Query:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        YSDMFRIVN  GK+NS+EIEL+SWKPELAIS+IESSA +HGVEPAFSCSLPTT +NSWEKFHEFNASPYVSPYVNP  LV+G+KEMEKRTVG
Subjt:  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G31290.1 Ubiquitin carboxyl-terminal hydrolase family protein7.8e-2861.96Show/hide
Query:  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        YSD+FR+VN  G+K+S+EIEL+ WKPELA+S +E++A K G EP+FSCSLP+T    WE+F EFNA PY+SPY +   LVEG+KE EKR+VG
Subjt:  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

AT2G31290.2 Ubiquitin carboxyl-terminal hydrolase family protein7.8e-2861.96Show/hide
Query:  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG
        YSD+FR+VN  G+K+S+EIEL+ WKPELA+S +E++A K G EP+FSCSLP+T    WE+F EFNA PY+SPY +   LVEG+KE EKR+VG
Subjt:  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

AT3G63090.1 Ubiquitin carboxyl-terminal hydrolase family protein5.3e-0832.38Show/hide
Query:  LKDYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSA----CKHGV--EPAFSCSLPTTL-----LNSWEKFHEFNASPYVSPYVNPVGLVEGTKEME
        ++ Y + FR+  + ++    +EL+SW P+ A S IE  A     K GV   P ++  LP+       +  W +  ++    Y+SPY +   L + +KEME
Subjt:  LKDYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSA----CKHGV--EPAFSCSLPTTL-----LNSWEKFHEFNASPYVSPYVNPVGLVEGTKEME

Query:  KRTVG
        KRTVG
Subjt:  KRTVG

AT5G21970.1 Ubiquitin carboxyl-terminal hydrolase family protein3.8e-0628.16Show/hide
Query:  DYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSA------CKHG---VEPAFSCSLPTTLLNSWE---KFHEFNASPYVSPYVNPVGLVEGTKEMEK
        ++   F++V +G      +EL+SW P  AI+ +E         C+H    +  AF    P +    +    K   F    Y+SPY +  GL  G+KE +K
Subjt:  DYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSA------CKHG---VEPAFSCSLPTTLLNSWE---KFHEFNASPYVSPYVNPVGLVEGTKEMEK

Query:  RTV
        R +
Subjt:  RTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCAGTTACAAATCATGAGAACATTAAATTGAAAGATTATTCAGATATGTTTCGAATTGTAAATATTGGAAAAAAGAACTCAATAGAAATAGAACTGATC
TCTTGGAAACCAGAGCTAGCAATTTCCAACATAGAATCTTCAGCTTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCATTGCCAACAACTTTGCTAAATTCA
TGGGAAAAGTTCCATGAATTTAATGCATCTCCATATGTGTCACCATATGTAAACCCTGTAGGTTTGGTGGAAGGTACAAAGGAGATGGAAAAGAGGACAGTGGGT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCCAGTTACAAATCATGAGAACATTAAATTGAAAGATTATTCAGATATGTTTCGAATTGTAAATATTGGAAAAAAGAACTCAATAGAAATAGAACTGATC
TCTTGGAAACCAGAGCTAGCAATTTCCAACATAGAATCTTCAGCTTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCATTGCCAACAACTTTGCTAAATTCA
TGGGAAAAGTTCCATGAATTTAATGCATCTCCATATGTGTCACCATATGTAAACCCTGTAGGTTTGGTGGAAGGTACAAAGGAGATGGAAAAGAGGACAGTGGGT
TGA
Protein sequenceShow/hide protein sequence
MWPVTNHENIKLKDYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG