CuGenDBv2

Gene ID	Bhi09G002829
Organism	Benincasa hispida cv. B227 (Wax gourd (B227) v1)
Description	RNase H domain-containing protein
Genome location	chr9:87428838..87429128
RNA-Seq Expression	Bhi09G002829
Synteny	Bhi09G002829
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF7822782.1 ribonuclease H [Senna tora]

4.7e-05

31.52

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Query:  LLVVKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEARANLQDGI
        +++++ LA  KGL+LAL +G + L V+ D  L + ++    +  + + +   + LS  ++F  +SFN+V R+CN  AD +T++AR + +D +
Subjt:  LLVVKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEARANLQDGI

XP_024156286.1 uncharacterized protein LOC112164301 [Rosa chinensis]

5.2e-04

39.51

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Query:  VKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEA
        V+ LA + GL+ A+ +G SNL V+ D L  +N +++    L+  G  +DE  SL KSF+  S ++V R  N++A  L KEA
Subjt:  VKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEA

XP_038704726.1 uncharacterized protein LOC120000672 [Tripterygium wilfordii]

8.8e-04

36.05

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Query:  FSLLVVKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEA
        F   VVK  A +KG +LA+ +G+SNL ++ D  + VN I ++   L   G  +D+  SL      +S  Y  RLCNR+A  L + +
Subjt:  FSLLVVKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEA

TrEMBL top hits

e value

%identity

Alignment

A0A2I4DDN2 uncharacterized protein LOC108979122

9.5e-04

34.57

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Query:  VKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEA
        ++LL  ++GL+L + LG+  L+++ DCLL V  +  D  + +  G+ + EA SL + F  I   +VNR+ N +A  L + A
Subjt:  VKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEA

A0A2I4FKP7 uncharacterized protein LOC108999774

9.5e-04

35.8

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Query:  VKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEA
        ++LLA ++GL+L + LG S L V+ DC+L V  + N+  +L    + + EA SL + F  +   YV+R+ N +A  L + A
Subjt:  VKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEA

A0A7N2R7I7 RNase H domain-containing protein

1.5e-04

30.43

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Query:  MDFSLLVVKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEARANL
        +D S+  ++ LA  + ++ AL +G+S + ++ D  + ++ + N    L   G+ +D+      +F CI+FNYV+R+CN +ADAL ++A +++
Subjt:  MDFSLLVVKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEARANL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGACTTTTCTCTTCTGGTTGTTAAACTACTTGCATTCATCAAAGGGTTGAAATTGGCTCTATTGCTTGGAATTTCCAATCTTACGGTTGATCCGGACTGTCTTCTTAC
TGTAAATCTCATCAACAATGATCATTCTACATTAAACAAGATTGGAAGCTGTGTTGACGAAGCGTTGTCACTGAAGAAGAGCTTCAATTGCATTTCCTTTAATTATGTAA
ATAGATTGTGTAATCGGTTGGCTGATGCTTTGACAAAAGAAGCTAGGGCCAACCTTCAAGATGGTATATGA

mRNA sequence

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Protein sequence

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MDFSLLVVKLLAFIKGLKLALLLGISNLTVDPDCLLTVNLINNDHSTLNKIGSCVDEALSLKKSFNCISFNYVNRLCNRLADALTKEARANLQDGI

Bhi09G002829 (gene) of Wax gourd (B227) v1 genome