; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Bhi10G001076 (gene) of Wax gourd (B227) v1 genome

Gene IDBhi10G001076
OrganismBenincasa hispida cv. B227 (Wax gourd (B227) v1)
Description50S ribosomal protein L30
Genome locationchr10:32929745..32933554
RNA-Seq ExpressionBhi10G001076
SyntenyBhi10G001076
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010749.1 rpmD [Cucurbita argyrosperma subsp. argyrosperma]3.2e-4791.67Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRL+VVETEEMYKARKQKVEQH ALRPP+VV+HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APISPLAS
        +P S  AS
Subjt:  APISPLAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]2.5e-4791.67Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRL+VVETEEMYKARKQKVEQH ALRPP+VV+HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APISPLAS
        +P S  AS
Subjt:  APISPLAS

XP_022947175.1 uncharacterized protein LOC111451121 [Cucurbita moschata]7.2e-4792.31Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRL+VVETEEM+KARKQKVEQHK+LRPP+VV+HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APIS
        AP S
Subjt:  APIS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]5.0e-4893.52Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRL+VVETEEMYKARKQKVEQH ALRPP+VV+HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APISPLAS
        AP S  AS
Subjt:  APISPLAS

XP_038901296.1 50S ribosomal protein L30 [Benincasa hispida]4.4e-52100Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APISPLAS
        APISPLAS
Subjt:  APISPLAS

TrEMBL top hitse value%identityAlignment
A0A1S3C214 50S ribosomal protein L303.5e-4788.89Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRL+VVETEEMYKARKQK+E+H+ALRPP+V++HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APISPLAS
        AP S  AS
Subjt:  APISPLAS

A0A5A7VAZ6 50S ribosomal protein L303.5e-4788.89Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRL+VVETEEMYKARKQK+E+H+ALRPP+V++HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APISPLAS
        AP S  AS
Subjt:  APISPLAS

A0A6J1CI25 uncharacterized protein LOC1110111343.5e-4791.59Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRL+VVETEEMYKARKQKVEQHKALRPP+VV+HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APISPLA
         P S  A
Subjt:  APISPLA

A0A6J1FUA4 uncharacterized protein LOC1114488481.2e-4791.67Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRL+VVETEEMYKARKQKVEQH ALRPP+VV+HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APISPLAS
        +P S  AS
Subjt:  APISPLAS

A0A6J1G641 uncharacterized protein LOC1114511213.5e-4792.31Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP
        MNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRL+VVETEEM+KARKQKVEQHK+LRPP+VV+HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLP

Query:  APIS
        AP S
Subjt:  APIS

SwissProt top hitse value%identityAlignment
A4QBL5 50S ribosomal protein L301.6e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

A8ZV75 50S ribosomal protein L301.6e-0443.86Show/hide
Query:  SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GM+++V  L+ VE
Subjt:  SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

C3PL27 50S ribosomal protein L302.1e-0440.74Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ L+ VE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

Q8FS51 50S ribosomal protein L309.3e-0550Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ LIVVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

Q8NSX3 50S ribosomal protein L309.3e-0548.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein1.3e-3367.35Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDH
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGM+ QVKR++VVETEEMY ARK+    HKALRPP+VV H
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGACTTCACAGA
CGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATAGTG
GTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTTCGACCTCCAATAGTTGTAGATCACCTTCCGGCTCCAATTTCTCCT
CTTGCCTCTTGA
mRNA sequenceShow/hide mRNA sequence
AAATAAACACAACCAAACCCTAAAATCAGATTTCCCTCGCAAACCCACAGCCTACGATCTTCTCTTCCTCAGTTCGTCTTCAACGCAAGCCCCAAGTGGATACGA
TCTTCTCTTCCTCAGTTCATCTTCTTCCTATTTATTCGACTGAGCAACTCTATTTTCCAGAACTACGCCGTCGCCGCCGAGCGTCATCCTCGTTGCCGACCACGC
CTCAACCTTGCCATCGACCATTTCGCCGCGCTTTGCCTTGTCGCCGCCATCGCCGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGT
CCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATG
CAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAA
ACAGAAGGTGGAACAGCACAAGGCCCTTCGACCTCCAATAGTTGTAGATCACCTTCCGGCTCCAATTTCTCCTCTTGCCTCTTGAAACATGTATTGTTGTTAGAG
GATTTTAAGCTTATAAAAGGGGCACCTTGAAGCAACGATCTTACTTGAGCAAGATCTCTTCTATATATTGTACAACCGTGTCCTTGAGTTCTAAAAGGGACACCT
TGAAGCACACACTCTTAAGTTTCTGTTGCCTTAATGCTTATTGACCCCTCCATTTCAAGTGCGATCATGTCATTTGAAGTCTTGAGCTCCTCATTGTTGTCTTTG
GAGCTGACATAATGCTGGTCTTTATATTGATGTTTCCGGGCAAGGAGAAGAAAAAAGAAAAAGTTTAGCAGGCCTAACACTGCGAGTAGCCAATAGAAGTAGTTT
AAGTCTCCCTTGTTGAGATTATTTCTCAGCCATTGCTTGTTGGTTACTTTATCTACAATTGTTACCAACAAACTACTGACAAAAAATCCCATGGAAAGAGTGCTA
AGAAAAAGTCCTGTGCTCATGGATTTCATTCGTTCCGGTGCTTCTCTGATGAAAAACTCGAGTTGTCCGACATATGCAAATGCTTCTCCAGCACCAACCAAGAAG
AACTGAGGTATTAACCAGAAAGCACTTATACGAGTATTTTGCTCGACTGCGAAGGTCTTCCTCTCTTTCTCAACAACTCCAGCAGCCACCATGCCAAAAATTGAG
AAAAACAGTCCAATCCCAATCCTCTGAAGGCTTGTGAGACCTTGGACATTGTGAGTCAGCTTCCGAGCAATGGGTATGAATAGTTTCTCATTCAATGAAGTGACG
AGCAGGATGGTGATGAACAGAAAGGCTGACATAGAACCGGCAGGAATCTCAAAACTGCCAACATTTCTTTCCATAAAGGATGCTTGTACTACTGTGAATGTAGTC
ATCTGTGAGTAGATTGTCCAGAAGAGGATGCCAGTGGACCAAATGGGTGTATGGAACCTTGGCATTTTGGTAGTCATTTAAGAAGCTTGGATGAGCTGCGTGAGG
GAGACTTCTCTTCTTCCAAGCCAAAAGCACCACTCTCCATATCACTGTTAGAGGGCTTCCTCTAGGCTTTTTAAACCGGTAAAAGTATGTCCCACAAAGCAGTAC
AATTACAGCAATCACCATGGTCCCTCCTGAGATTCCATATCCCCATCCTCTCCCCACATGGTCTTGTACATAAACCAACACAGTGACGGAAAACAACGACCCGAT
GCTTATCGCAAAGTAGAACCTATTGAAGAAGAATATCATGGCCTTCTCTTCCTTCGGATCATTAGTGTCGAATTGATCAGACCCAAATCCTGAAACGTTCGATTT
TATCCCCCCTCCACCAAGTGCTATAGTATAAAGTGCAGCATAGAGCATGGCAAGTTGCCCACCATTAGCTTCAATGCATTGATGAAGTTGTCTTGTGGAGTAATC
ACATTGAGGGGGTCTCATACCAGGGATGGTTG
Protein sequenceShow/hide protein sequence
MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLPAPISP
LAS