CuGenDBv2

Gene ID	CSPI01G00490
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	mediator of RNA polymerase II transcription subunit 30
Genome location	Chr1:261464..263256
RNA-Seq Expression	CSPI01G00490
Synteny	CSPI01G00490
Gene Ontology terms	GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034568 - Mediator of RNA polymerase II transcription subunit 30

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]

2.2e-97

100

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Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]

5.9e-95

97.98

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Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]

3.6e-84

87.37

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Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A   L+IASP+GPS HS NGVVNGDASSEST+HH D+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]

1.0e-91

93.94

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Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]

3.4e-90

94.95

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Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST TTATSGL IASP+GPSSHS NGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKA AYESGTSG  SPADQSEIDKLEQHLS+LRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNW4 Uncharacterized protein

1.0e-97

100

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Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 30

2.9e-95

97.98

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Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 30

2.9e-95

97.98

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Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 30

5.0e-92

93.94

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Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 30

5.0e-92

93.94

Show/hide

Query:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

SwissProt top hits

e value

%identity

Alignment

Q9FMV4 Mediator of RNA polymerase II transcription subunit 30

3.4e-45

55.85

Show/hide

Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEE
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+          +  + + +V+ DA++ + TSHH++S+GGGG G  G   L+E
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEE

Query:  ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        A +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Arabidopsis top hits

e value

%identity

Alignment

AT5G63480.1 unknown protein

2.4e-46

55.85

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Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEE
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+          +  + + +V+ DA++ + TSHH++S+GGGG G  G   L+E
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEE

Query:  ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        A +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCT
CTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTT
CGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAG
GCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATC
GCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAG
ATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA

mRNA sequence

Show/hide mRNA sequence

CTGGGGTTTCTCGATTACTAATGAGAGAGTTAGGGTTTCGTGAACATCACAAACTCAAGTGTAATTGAAAGTTGGAATTGGGAATTTTGAAGATTCAGAACTCTCTCTCT
TTACAAATTCGGTGCATTTTCGAATACATTATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGA
AGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTT
TAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGA
GGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGC
ATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGC
ATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAAACGTGCTAGCTTTGACTTTAGAGTCTCCT
CGCTAATTGAGCTGTTGAAGTTTATAATTGCGATGTTCTGTTTCTTGAAAAGATGAGTTGTTATTAGAACGTTTCTTTGCATCTCTTCATTGAAAGTGGTGGCTATACAA
ATTTGCCATTGCCTATAAATTGTCAATATAGAGTAAGGCTCTGATAAATCAAGTGCCAAAGGAATTAAAGGT

Protein sequence

Show/hide protein sequence

MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEE
ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

CSPI01G00490 (gene) of Cucumber (PI 183967) v1 genome