; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G01440 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G01440
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal RNA-processing protein 40
Genome locationChr1:963602..967609
RNA-Seq ExpressionCSPI01G01440
SyntenyCSPI01G01440
Gene Ontology termsGO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0071034 - CUT catabolic process (biological process)
GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process (biological process)
GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012340 - Nucleic acid-binding, OB-fold
IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR036612 - K Homology domain, type 1 superfamily
IPR037319 - Rrp40, S1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589448.1 Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia]1.8e-12595.47Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISVSKVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPVLES GKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNADSPST IVVSNAILNSETLSGVQQRIMVDKL  NLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

KAG7023129.1 putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-12595.47Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISVSKVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPVLES GKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNADSPST IVVSNAILNSETLSGVQQRIMVDKL  NLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

XP_004138110.1 putative exosome complex component rrp40 isoform X1 [Cucumis sativus]1.1e-13099.59Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

XP_008464560.1 PREDICTED: putative exosome complex component rrp40 [Cucumis melo]4.5e-12997.94Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPVLESLGKKLSFETA+GLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

XP_038878675.1 putative exosome complex component rrp40 [Benincasa hispida]1.4e-12595.47Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEKPSSSSSTLVD PVVPGDVVLDLSNMANETIKLG GLRQDQD ISVSKVGKLR SKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        L FLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CP+LESLGKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNA+SPST IVVSNAILNSETLSGVQQRIMVDKL  NLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

TrEMBL top hitse value%identityAlignment
A0A0A0LP58 Ribosomal RNA-processing protein 405.2e-13199.59Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

A0A1S3CNB3 Ribosomal RNA-processing protein 402.2e-12997.94Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPVLESLGKKLSFETA+GLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

A0A5D3BFK9 Ribosomal RNA-processing protein 402.2e-12997.94Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPVLESLGKKLSFETA+GLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

A0A6J1E1A1 Ribosomal RNA-processing protein 401.5e-12595.06Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEK SSSSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQD DAISVSKVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPVLES GKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNADSPST IVVSNAILNSETLSGVQQRIMVDKL  NLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

A0A6J1JLH7 Ribosomal RNA-processing protein 403.6e-12493.83Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISVSKVGKLRF+KPNKYWVESSQKRYVPC EDCVLGIV+DSR+DNFLVDIKGP+
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPVLES GKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS
        WVNADSPST IVVSNA+LNSETLSGVQQRIMVD L  NLKLSS
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS

SwissProt top hitse value%identityAlignment
Q3T0E1 Exosome complex component RRP409.3e-3734.51Show/hide
Query:  SSSTLVDQPVVPGDVV--------------------LDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVL
        ++ T++DQ V+PG+ +                    L+ +  +   +  G GLR+  D + V+K G+LR  +P        YWV+S QKRYVP   D V+
Subjt:  SSSTLVDQPVVPGDVV--------------------LDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVL

Query:  GIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPSCPV
        GIV     D F VD+ G   A L  LAFEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +
Subjt:  GIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPSCPV

Query:  LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL
        L+ +GK    E   G+NGR+WV A +    ++++N +   E ++  Q++ +  +L
Subjt:  LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL

Q7KWX9 Putative exosome complex component rrp402.2e-4645.41Show/hide
Query:  TLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNK-YWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAF
        TL DQ VVPGDV+  + ++    +++G GL Q +D +  +K G LR+SK ++ YW+E+ QKRYVP  ED V+G +++  A++F VDI     A L   +F
Subjt:  TLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNK-YWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAF

Query:  EGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPST
        EG T+ N P   +G L+Y RV   N  M PE+ C     KA GFG L  GYM  CS GLS  LLS   C +L+ LGK + +E AVG+NGRVW+N+ S   
Subjt:  EGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPST

Query:  IIVVSNAILNSETLSGVQ
         IVVSN I NS+ +   Q
Subjt:  IIVVSNAILNSETLSGVQ

Q7TQK4 Exosome complex component RRP401.6e-3639.51Show/hide
Query:  GGGLRQDQDAISVSKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVV
        G GLR+  D + V+K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D F VD+ G   A L  LAFEG T+RN P  ++G L+Y + V
Subjt:  GGGLRQDQDAISVSKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVV

Query:  KVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRI
          N  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +++ LGK    E   G+NGR+WV A +    ++++N +   E ++  Q++ 
Subjt:  KVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRI

Query:  MVDKL
        +  +L
Subjt:  MVDKL

Q8IPX7 Exosome complex component RRP406.9e-4038.46Show/hide
Query:  SSSSTLVDQPVVPGDVVLDLSNMA-NETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLP
        S++ST+    V+PG+ +  +  +A ++ + LG GLR+  D +  SK G LR  +P  +WV++ Q+RY+P   D +LGIV     D + VDI     A + 
Subjt:  SSSSTLVDQPVVPGDVVLDLSNMA-NETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNAD
         LAFE  +++N P    G L+Y RV+  +  + PEL C ++ GK+   G+L DG+ F+CS  L RMLL   +CPVL +L ++L +E AVG+NGR+W+ A 
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNAD

Query:  SPSTIIVVSNAILNSETLSGVQQRIMVDKLHANL
        S    + ++NAI   E  SG  +   +DK+  NL
Subjt:  SPSTIIVVSNAILNSETLSGVQQRIMVDKLHANL

Q9NQT5 Exosome complex component RRP406.1e-3637.12Show/hide
Query:  PGDVV---LDLSNMANETIKL--GGGLRQDQDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVL
        PG  V   L L+  A   +++  G GLR+  D + V+K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   A L  L
Subjt:  PGDVV---LDLSNMANETIKL--GGGLRQDQDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVL

Query:  AFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADS
        +FEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +++ +GK    E   G+NGR+WV A +
Subjt:  AFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADS

Query:  PSTIIVVSNAILNSETLSGVQQRIMVDKL
            ++++N +   E ++  Q++ +  +L
Subjt:  PSTIIVVSNAILNSETLSGVQQRIMVDKL

Arabidopsis top hitse value%identityAlignment
AT2G25355.1 PNAS-3 related4.1e-9673.48Show/hide
Query:  SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLP
        S+S ++L+DQ VVPGDVVLDLSNM N+TIKLG GLRQD + ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIV+D + +N+ +DIKGP LA LP
Subjt:  SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNAD
        VLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLSSP+CPVLE+LGKKLSFETA GLNGR WV+A 
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNAD

Query:  SPSTIIVVSNAILNSETLSGVQQRIMVDKL
        +P  +I+V+NA++NSETLSG QQRIMV+KL
Subjt:  SPSTIIVVSNAILNSETLSGVQQRIMVDKL

AT2G25355.2 PNAS-3 related1.3e-8673.43Show/hide
Query:  MANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYV
        M N+TIKLG GLRQD + ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIV+D + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY 
Subjt:  MANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYV

Query:  RVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQ
        RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLSSP+CPVLE+LGKKLSFETA GLNGR WV+A +P  +I+V+NA++NSETLSG QQ
Subjt:  RVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQ

Query:  RIMVDKL
        RIMV+KL
Subjt:  RIMVDKL

AT4G32175.1 PNAS-3 related1.4e-9673.84Show/hide
Query:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS
        M  K S S ++L++Q VVPGDVVLDLSNM N+TIKLG GL QD DAIS  + GKL +SKPNKYW+ESS KRY+P  +D VLGIV+DSRADNF VDIKGP 
Subjt:  MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPS

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV
        LA LPVLAFEGGTRRNIPKFE+G LLY+RVVK N GMNPEL+CT+ASGKAA FG L+DG+MFE STGLSRMLL+SP+ PV+E+LGKKLSFE AVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRV

Query:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHA
        WVNA +P  +I+V+NAI+NSE+LSG QQRIMV+KL A
Subjt:  WVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAAAAGCCTTCTAGTTCGTCGTCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGG
AGGCGGTCTTCGACAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGC
CATGTGCGGAAGATTGTGTCCTTGGAATCGTACTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCGTTAGCCTTTCTTCCTGTTCTTGCATTTGAA
GGAGGAACAAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTAAACCCTGGAATGAATCCCGAGTTGGCATGCACCGATGCGAG
TGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGTTCTCCCTCATGTCCAGTTCTTGAATCTC
TTGGGAAGAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGCGTTTGGGTCAATGCTGATTCTCCATCTACAATCATTGTTGTTTCGAATGCAATATTGAACTCC
GAAACACTCTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCATGCCAATTTAAAGCTGTCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
GGTTAAAAAAGTGACCACGTGAAATTTGATTTTCTCCTAATAAATTCTCTAAACAATTCGTTCCGCACTTGTTCGCGCGTATACTTCCTTCTCTTTCGTGTTCATCGCTC
ACCATTCTTCCGATCGTCGCTTGCAAGTACAAGATTTTTCTTACTTGTATCTGCAACAATGGTTGAAAAGCCTTCTAGTTCGTCGTCTACTCTCGTTGATCAGCCAGTTG
TTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAA
CTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTACTTGACTCTAGAGCCGACAA
TTTTCTTGTTGACATAAAAGGTCCGTCGTTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATG
TGCGGGTAGTGAAGGTAAACCCTGGAATGAATCCCGAGTTGGCATGCACCGATGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTACATGTTTGAGTGT
TCAACTGGCTTATCAAGAATGCTTCTAAGTTCTCCCTCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGCGTTTG
GGTCAATGCTGATTCTCCATCTACAATCATTGTTGTTTCGAATGCAATATTGAACTCCGAAACACTCTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCATGCCA
ATTTAAAGCTGTCAAGTTAGAATTCTAATTTGTAGTCATGTATTATTTAGCTCAAGTCTTACGAGAACAGTAATTAGCCAAATCTTTTCTTCTCTTTGGAATTGAGAAAG
ATTCATGATTTTCTTATATTCATTAACTCTCAAGTTCAATGGCTATCTGGTCCACTTGTTAAGGAGTTATTGGCCTTGAAAAAGAATTAAAGATAGTGAGTGGATTAAAT
TTTCATAATTCTATTTGTTTAGCAGATATACCCGAAGGGAAAGAAGAGCAGACCTACTCCAAATTTAATACCACTAATTTAGTTTTGTTAAATTGTTCAATATCAATTGT
ATCCGAATATTGGGTCTGTTTAGGACCTATGGGACGTCCCAAAATTTTATAATTGGAAAGGAAATCTTGTCGAAAATGGTTGATAAGATAGAGACTATGAAATTTTTAAT
AAACTC
Protein sequenceShow/hide protein sequence
MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFE
GGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNS
ETLSGVQQRIMVDKLHANLKLSS