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CSPI01G01640 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G01640
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description39S ribosomal protein L47, mitochondrial
Genome locationChr1:1083664..1087451
RNA-Seq ExpressionCSPI01G01640
SyntenyCSPI01G01640
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0032543 - mitochondrial translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003682 - chromatin binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR010729 - Ribosomal protein L47, mitochondrial
IPR038340 - MRP-L47 superfamily, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587484.1 39S ribosomal protein L47, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]5.1e-4993.58Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
KAG7021471.1 39S ribosomal protein L47, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-4993.58Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
XP_004138121.1 39S ribosomal protein L47, mitochondrial [Cucumis sativus]2.9e-52100Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
XP_008453113.1 PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]5.5e-5198.17Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERI KV
Subjt:  PNPERIPKV
XP_038879389.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]6.0e-5096.33Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSAT AAAATAR GYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
TrEMBL top hitse value%identityAlignment
A0A0A0LS48 Uncharacterized protein1.4e-52100Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
A0A1S3BWK4 39S ribosomal protein L47, mitochondrial2.6e-5198.17Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERI KV
Subjt:  PNPERIPKV
A0A6J1C2P6 39S ribosomal protein L47, mitochondrial2.6e-4692.66Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
         NPERIPKV
Subjt:  PNPERIPKV
A0A6J1I0P6 39S ribosomal protein L47, mitochondrial-like1.2e-4892.66Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        M LTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
A0A6J1JCZ2 39S ribosomal protein L47, mitochondrial3.9e-4793.58Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRV GR FLAAARSETSSA AAAA+TA TGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKV
        PNPERIPKV
Subjt:  PNPERIPKV
SwissProt top hitse value%identityAlignment
P87232 54S ribosomal protein L4, mitochondrial1.3e-0737.93Show/hide
Query:  NPLEEFFEADRS-PDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFP--NPERIPKVEVDIDLVLF
        +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P  + ER+  V   +  + F
Subjt:  NPLEEFFEADRS-PDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFP--NPERIPKVEVDIDLVLF
Q08DT6 39S ribosomal protein L47, mitochondrial3.0e-1250Show/hide
Query:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVEVDID
        LEEFF+  ++  + K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV   +D
Subjt:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVEVDID
Q2H080 54S ribosomal protein L4, mitochondrial3.8e-0742.86Show/hide
Query:  LEEFFEADRSPDDGKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPE
        L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     N   L F   E
Subjt:  LEEFFEADRSPDDGKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPE
Q8K2Y7 39S ribosomal protein L47, mitochondrial3.0e-1250Show/hide
Query:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVEVDIDLV
        LEEFF+  ++  + K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV   +D V
Subjt:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVEVDIDLV
Q9HD33 39S ribosomal protein L47, mitochondrial1.2e-1148.72Show/hide
Query:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVEVDID
        LEEFF+  ++    K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV   +D
Subjt:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVEVDID
Arabidopsis top hitse value%identityAlignment
AT1G07830.1 ribosomal protein L29 family protein8.4e-4280Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAA-TARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLK
        MFLTR  GR FLAAA + + S TAAAAA T RT  NPLEEFFE DRS D+ KPVVYGR WKASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAA-TARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLK

Query:  FPNPERIPKV
        FPNPERIPKV
Subjt:  FPNPERIPKV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCCACAGCTAGGACGGGCTATAACCCGCT
TGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCGGAACTACGGCTCAAGTCTTGGGACGATCTTAATA
AACTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGCCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAATCCAGAACGCATTCCCAAGGTAGAA
GTAGACATAGATTTAGTATTATTTTCAAATTGTAAATATAAGTTCAATTTGCTTTCTCTTTTATATTGGATCTGTTTCCTTCTCCTCCTTCAGTCGTGTAATCTTAAGCC
TGGCAATGGCTCTCCTTCCACTACTTTTCTATTCTAA
mRNA sequenceShow/hide mRNA sequence
AATTTAGGTAAAAACTGATTAATTTTCCTAATAAAAAGCTGTCGGCGTCTCACCCTCTCGTCTCAAGTCCCTCACGCTTCGTAGACTTCCGTCGCCACTGCTTCCTCGTT
CGCCGCGGGAGCTCAGATCGTTGCAGCTTGGCGGAGACAGGCCTTGTGTGAGCTTACCTGCTCCTTCTCTGTTCAGCCCGTCGTTCGGTTCAGTAGTACGACCACTACCT
GCAGAATTAGAGCATTAGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCCA
CAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCGGAACTACGG
CTCAAGTCTTGGGACGATCTTAATAAACTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGCCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAA
TCCAGAACGCATTCCCAAGGTAGAAGTAGACATAGATTTAGTATTATTTTCAAATTGTAAATATAAGTTCAATTTGCTTTCTCTTTTATATTGGATCTGTTTCCTTCTCC
TCCTTCAGTCGTGTAATCTTAAGCCTGGCAATGGCTCTCCTTCCACTACTTTTCTATTCTAATGTTAATGCCCGTTGTTGATACTTGTAATTTAGGTGAGGAAGTCAATG
TGTCGAATCAAGCACGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAACGCTCTGTGATGACCGCAAGTGTTTCA
AAATTTAGTACGCCGTAGATCTTATCATCTCAGAGACCAAAGGATAAAGAGTTAGCAAGATAATATGCACGTCTAATGCAAAGTCAGTTCAAATTCATTCTGTAATAGAA
GATCTCATTAGAACCCTAGAAGAAACTGTTTTGATGATTTCTAATCTTGTTTTTATCTTTACACTAATCAAAAGTTTGAAGATTTTGTTTATTTGTGCCAAGAAAAAAAA
AAAAAAAAAACATTGGCCAAGTTTATTCTTAGAAGATTTGGAACACACGTGTGTATGTGTGAGGAACAAGTTGAAAATGAAAAAGTTGACAAAAGAAAAAAAAGAAAGAA
AAAGAAAGAAAAAGAAAAGGATGCTTTGATTTGGTGTTGGGAAAATGAAAGTATTGTCATGAATGTTAGGAGGACCATAAACAACACAAAGGTAGAATGTGTGTTGATGC
TTTGGCTTTGATAATCCTATGCAGC
Protein sequenceShow/hide protein sequence
MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVE
VDIDLVLFSNCKYKFNLLSLLYWICFLLLLQSCNLKPGNGSPSTTFLF