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CSPI01G02180 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G02180
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontranscription factor PRE3-like
Genome locationChr1:1422215..1422585
RNA-Seq ExpressionCSPI01G02180
SyntenyCSPI01G02180
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138158.1 transcription factor PRE3-like [Cucumis sativus]3.1e-38100Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_008453188.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]6.9e-3898.91Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSA+KVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022135424.1 transcription factor ILI6-like [Momordica charantia]5.5e-3595.65Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSA+ VLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_027904697.1 transcription factor PRE3 [Vigna unguiculata]1.6e-3491.3Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQ+G+SR+ITDDQINDLVSKLQQLLPEIR R+SDKVSASKVLQETCNYIR+LHREVDDLSERLSELLAT+DTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_038880650.1 transcription factor PRE3-like [Benincasa hispida]1.9e-3596.74Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRH QSDKVSA+KVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

TrEMBL top hitse value%identityAlignment
A0A1S3BWE2 transcription factor PRE3-like3.3e-3898.91Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSA+KVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A1S3TPF8 transcription factor ILI61.0e-3491.3Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQ+G+SR+ITDDQINDLVSKLQQLLPEIR R SDKVSASKVLQETCNYIR+LHREVDDLSERLSELLAT+DTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1C1E4 transcription factor ILI6-like2.6e-3595.65Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSA+ VLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1JIT1 transcription factor PRE3-like1.7e-3492.39Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRH QSDKVSA+K+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

V7AX30 BHLH domain-containing protein1.3e-3491.3Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQ+GSSR+ITDDQINDLVSKLQQLLPEIR R+SDKVSASKVLQETCNYIR+LHREVDDLSERLSELLAT+D+AQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI61.2e-2981.72Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSR ITD+QI+DLVSKLQ LLPE R R +D+V +S+VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM

F4JCN9 Transcription factor PRE46.3e-2672.04Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSR+SRSRQ+G+S  ITD+QINDLV +L +LLPE+  +R+S KVSAS+VLQETC+YIRNL +EVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

Q0DUR2 Transcription factor ILI61.2e-2981.72Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSR ITD+QI+DLVSKLQ LLPE R R +D+V +S+VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM

Q8GW32 Transcription factor PRE67.2e-3082.8Show/hide
Query:  MSSRR-SRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSR I+DDQI+DLVSKLQ L+PE+R R+SDKVSASKVLQETCNYIRNLHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE31.9e-3078.49Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIR-HRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQS  +  I++DQINDL+ KLQQLLPE+R  R+SDKVSA++VLQ+TCNYIRNLHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIR-HRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.1e-3182.8Show/hide
Query:  MSSRR-SRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSR I+DDQI+DLVSKLQ L+PE+R R+SDKVSASKVLQETCNYIRNLHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.3e-3178.49Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIR-HRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQS  +  I++DQINDL+ KLQQLLPE+R  R+SDKVSA++VLQ+TCNYIRNLHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIR-HRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.9e-2367.02Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELL--ATSDTAQAAIIRSLLM
        MS+R  RSRQ+ ++  I+DDQ+ DLVSKL+Q LPEI   R+SDKVSASKVLQETCNYIR LHREVD+LS+RLS+LL     D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELL--ATSDTAQAAIIRSLLM

AT3G47710.1 BANQUO 34.5e-2772.04Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSR+SRSRQ+G+S  ITD+QINDLV +L +LLPE+  +R+S KVSAS+VLQETC+YIRNL +EVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.3e-2368.09Show/hide
Query:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLAT--SDTAQAAIIRSLLM
        MS+R  RSRQS S+  I+D+Q+ DLVSKL+Q+LPEI + R+SDK SASKVLQETCNYIRNL+REVD+LSERLS+LL +   D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEI-RHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLAT--SDTAQAAIIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCAGAAGATCTAGATCTAGACAGTCAGGTAGTTCAAGATCAATCACTGATGACCAAATTAATGATCTTGTTTCTAAGCTGCAACAACTTCTTCCCGAGATTCG
TCACAGGCAATCCGATAAGGTTTCAGCATCAAAAGTGTTGCAGGAGACGTGTAACTACATACGAAACCTACACAGAGAAGTGGATGATTTGAGTGAGAGACTTTCGGAGT
TGTTGGCAACATCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTACTGATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCAGAAGATCTAGATCTAGACAGTCAGGTAGTTCAAGATCAATCACTGATGACCAAATTAATGATCTTGTTTCTAAGCTGCAACAACTTCTTCCCGAGATTCG
TCACAGGCAATCCGATAAGGTTTCAGCATCAAAAGTGTTGCAGGAGACGTGTAACTACATACGAAACCTACACAGAGAAGTGGATGATTTGAGTGAGAGACTTTCGGAGT
TGTTGGCAACATCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTACTGATGCAATAG
Protein sequenceShow/hide protein sequence
MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ