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CSPI01G02680 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G02680
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLYR motif-containing protein 4
Genome locationChr1:1709006..1709658
RNA-Seq ExpressionCSPI01G02680
SyntenyCSPI01G02680
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453246.1 PREDICTED: LYR motif-containing protein 4 [Cucumis melo]3.7e-3691.11Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGKAQLEVAKRQSA+YSLY PKVKSIMEAHRIN
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

XP_011660289.1 LYR motif-containing protein 4 [Cucumis sativus]1.5e-40100Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

XP_022134602.1 LYR motif-containing protein 4-like [Momordica charantia]6.5e-3382.22Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        MA+PTR+EALSLLRSL+RTARHF DYN+REYAKRRAVDGFRHNRNLSDP SISSAYADG+AQLEVA+RQS VYS + PKVKSIM+ H  N
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

XP_022932898.1 LYR motif-containing protein 4 [Cucurbita moschata]5.9e-3486.67Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        MA+PTRSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SI  AYADGKAQLEVAKRQS VYSL+ PKVKSIMEAH  N
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

XP_038879775.1 LYR motif-containing protein 4-like [Benincasa hispida]1.3e-3691.11Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        M +PTRSEALSLLRS +RTARHF DYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY PKVKSIME HR N
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

TrEMBL top hitse value%identityAlignment
A0A0A0LPH2 Uncharacterized protein7.0e-41100Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

A0A1S3BV74 LYR motif-containing protein 41.8e-3691.11Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGKAQLEVAKRQSA+YSLY PKVKSIMEAHRIN
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

A0A5A7UTC8 LYR motif-containing protein 41.8e-3691.11Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGKAQLEVAKRQSA+YSLY PKVKSIMEAHRIN
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

A0A6J1F322 LYR motif-containing protein 42.9e-3486.67Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        MA+PTRSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SI  AYADGKAQLEVAKRQS VYSL+ PKVKSIMEAH  N
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

A0A6J1IC29 LYR motif-containing protein 42.9e-3486.67Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN
        MA+PTRSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SI  AYADGKAQLEVAKRQS VYSL+ PKVKSIMEAH  N
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN

SwissProt top hitse value%identityAlignment
B5X5U9 LYR motif-containing protein 4A2.4e-0634.21Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY
        MA+ +R++ +SL R LI+ ++ F  YN R YA RR  D FR N ++ +P ++       +  L V +RQ ++  +Y
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY

B8JLQ0 LYR motif-containing protein 42.9e-0738.16Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY
        MAS +R++ +SL R L++ ++ F  YN R YA RR  DGFR N ++ +P ++       +  L V KRQ ++  LY
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY

Q54FN9 LYR motif-containing protein 41.4e-0642.25Show/hide
Query:  RSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY
        +S  L L RSL+R ++ FS YN REY+ RR   GFR N+N  D         D    LE+ KRQ+ + S+Y
Subjt:  RSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY

Q6Q560 Protein ISD111.7e-0737.84Show/hide
Query:  SPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY
        +PTR + LSL +  I+ A  F++YN REY   +    FR N N  DP  + + + + K  L V KRQS +  +Y
Subjt:  SPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY

Q8K215 LYR motif-containing protein 46.2e-1042.11Show/hide
Query:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY
        MA+ +R++ L L R+++R ++HFS YN R YA RR  D FR N+N+ DP  I +     K  LE+ +RQ  +  LY
Subjt:  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY

Arabidopsis top hitse value%identityAlignment
AT5G61220.1 LYR family of Fe/S cluster biogenesis protein3.0e-2059.49Show/hide
Query:  SEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIME
        SE LSL R+L+R  R F DYNIREY+KRR +DGFR N+NL+DP  ++ AYA+ K QL VA+R   VY  Y PK K+IME
Subjt:  SEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGATCCGTACAGCCCGTCACTTCTCCGATTACAACATCAGAGAGTACGCCAAACGACGCGCGGT
CGATGGCTTCCGCCATAACCGAAACCTTTCCGATCCTCCATCCATTTCTTCCGCCTATGCCGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCGCCGTTTACT
CCCTCTATGGGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGA
mRNA sequenceShow/hide mRNA sequence
GTATAATAATCGACAATATATTGTTTTCTATTAATTTATTATTGTTATTGTTGTGATGCCAAAGAAAGTCTTCGTCAAATCCCTAAACTTTCTTTCACTAAACTATTCTA
TCGATTTCTTCGAAAATGGCGTCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGATCCGTACAGCCCGTCACTTCTCCGATTACAACATCAGAGAGTACGC
CAAACGACGCGCGGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGATCCTCCATCCATTTCTTCCGCCTATGCCGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGAC
AGTCCGCCGTTTACTCCCTCTATGGGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGAATACGGAAGCTCTTTTTCCTTAATTTATTGTAATTCTAATTC
TATTGTGATAGATTTCGTGAGTAAGGGTTTATTTCTGCTTCACGGATCATACCTTTTCTACTAAGAATTTAATAAATCGTTTGAGTAATTAATCCTTGACTGTGGGATGA
AATATGAAATATTTGGTGATGATGAAAACATGATTACACTGATCTTCTCATTCGTTTTGATTTGTTGATATGATCTCCTTTCCAATTTTTTTTTTTGTATGGA
Protein sequenceShow/hide protein sequence
MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKVKSIMEAHRIN