CuGenDBv2

Gene ID	CSPI01G03860
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Condensin-2 complex subunit
Genome location	Chr1:2399789..2400286
RNA-Seq Expression	CSPI01G03860
Synteny	CSPI01G03860
Gene Ontology terms	GO:0006325 - chromatin organization (biological process) GO:0007062 - sister chromatid cohesion (biological process) GO:0007076 - mitotic chromosome condensation (biological process) GO:0009556 - microsporogenesis (biological process) GO:0010032 - meiotic chromosome condensation (biological process) GO:0051301 - cell division (biological process) GO:0098653 - centromere clustering (biological process) GO:0000779 - condensed chromosome, centromeric region (cellular component) GO:0000791 - euchromatin (cellular component) GO:0000796 - condensin complex (cellular component) GO:0005654 - nucleoplasm (cellular component) GO:0003682 - chromatin binding (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	IPR026971 - Condensin subunit 1/Condensin-2 complex subunit D3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8637200.1 hypothetical protein CSA_019088 [Cucumis sativus]

1.2e-53

99.16

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        MRIYVSLLKQMAPEHLLA FAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQNTIPIFIELKRLMESKN
Subjt:  IQNTIPIFIELKRLMESKN

KAE8637533.1 hypothetical protein CSA_022907 [Cucumis sativus]

1.2e-53

99.16

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        MRIYVSLLKQMAPEHLLA FAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQNTIPIFIELKRLMESKN
Subjt:  IQNTIPIFIELKRLMESKN

XP_008458433.1 PREDICTED: condensin-2 complex subunit D3 [Cucumis melo]

2.6e-51

95.8

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        M IYVSLLKQMAPEHLLA FAKLCAEVLVAASDGMLNIDD TARSVLQDTF+ILACKEIRLSINRVSSSESGDV EEGGESGGASAARGKVITHAVRKSL
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQNTIPIFIELKRLMESKN
Subjt:  IQNTIPIFIELKRLMESKN

XP_031745439.1 LOW QUALITY PROTEIN: condensin-2 complex subunit D3-like [Cucumis sativus]

1.3e-50

96.64

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        M IYVSLLKQMAPEHLLA FAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILA KEIRLSINRVSSSESGDVGEEGGESG ASAARGKVITHAVRKSL
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQNTIPIFIELKRLMESKN
Subjt:  IQNTIPIFIELKRLMESKN

XP_038874590.1 condensin-2 complex subunit D3 isoform X1 [Benincasa hispida]

1.1e-51

94.96

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        M IYVSLLKQMAPEHLLA FAKLCAE+LVAASDGMLNIDDTTARSVLQDTF+ILACKEIRLS+NRVSSSESGDV EEGGESGGASAARGKVITHAVRKSL
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQNTIPIFIELKRLMESKN
Subjt:  IQNTIPIFIELKRLMESKN

TrEMBL top hits

e value

%identity

Alignment

A0A178V253 Condensin-2 complex subunit

6.4e-40

74.79

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        M+IY++LLKQMAPEHLLA FAKLCAE+L AASDGMLNI+D T +SVLQDTF+ILACKEIRLS++R +SSE+ D+ EEGG+   A+ A+G+ ITHAVRK L
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQNTIPIFIELKRL+ESKN
Subjt:  IQNTIPIFIELKRLMESKN

A0A1S3C933 condensin-2 complex subunit D3

1.2e-51

95.8

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        M IYVSLLKQMAPEHLLA FAKLCAEVLVAASDGMLNIDD TARSVLQDTF+ILACKEIRLSINRVSSSESGDV EEGGESGGASAARGKVITHAVRKSL
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQNTIPIFIELKRLMESKN
Subjt:  IQNTIPIFIELKRLMESKN

A0A6J1CAM9 condensin-2 complex subunit D3

8.9e-42

79.34

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASA--ARGKVITHAVRK
        M IYVSLLKQMAPEHLLA FAKLCAE+L AASDGMLNIDD TA+SVLQDTF ILACKEIR+S+NR SSSES D  EEGG+SG ASA  ARG+ IT AV++
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASA--ARGKVITHAVRK

Query:  SLIQNTIPIFIELKRLMESKN
        SLI NT+PIFIELKRL+ESKN
Subjt:  SLIQNTIPIFIELKRLMESKN

A0A6J1H4Z7 condensin-2 complex subunit D3

7.8e-46

85.71

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        M IYVSLLKQM+PEHLLA FAKLC+E+L  ASDG L++DDTTARSVLQDTF+ILACKEIRLSINR SSSESGDV EEGGESGGASAARGKVITH VRKSL
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQN++PIF ELKRLMESKN
Subjt:  IQNTIPIFIELKRLMESKN

A0A6J1L4I0 condensin-2 complex subunit D3

1.1e-44

84.87

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        M IYVSLLKQMAP HLLA FAKLC+E+L  ASDG L++DDTTARSVLQDTF+ILACKEIRLSINR SSSESGDV EEGGESGG SAARGKVITH VRK L
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQN+IPIF ELKRLMESKN
Subjt:  IQNTIPIFIELKRLMESKN

SwissProt top hits

e value

%identity

Alignment

P42695 Condensin-2 complex subunit D3

1.4e-07

33.85

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASA----ARGKVITHAV
        M+IY  LL+    E      +K+C  +L   +DG+L + D  A  +L DTFE+L+ KEI+L   R  S    D+  E  +   A+     A+ K+I+   
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASA----ARGKVITHAV

Query:  RKSLIQNTIPIFIELKRLMESKNRYGVLTQ
        +++ I+N IPI I LK ++E KN+   L +
Subjt:  RKSLIQNTIPIFIELKRLMESKNRYGVLTQ

Q6ZQK0 Condensin-2 complex subunit D3

3.6e-08

34.88

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGG---ASAARGKVITHAVR
        MRIY  LL+    E      +K+C  +L   +DG+L + D  A  +L DTF+IL  KEI+L   R  +S+  D+ EE   +        A+ K+I+   +
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGG---ASAARGKVITHAVR

Query:  KSLIQNTIPIFIELKRLMESKNRYGVLTQ
        ++ I+N IPI I LK ++E KN+   L +
Subjt:  KSLIQNTIPIFIELKRLMESKNRYGVLTQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G15890.1 binding

3.6e-43

74.79

Show/hide

Query:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL
        M+IYV+LLKQMAPEHLLA FAKLCAE+L AASDGMLNI+D T +SVLQD F+ILACKEIRLS++R +SSE+ D+ EEGG+   A+ A+G+ ITHAVRK L
Subjt:  MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSL

Query:  IQNTIPIFIELKRLMESKN
        IQNTIPIFIELKRL+ESKN
Subjt:  IQNTIPIFIELKRLMESKN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGCATTTATGTTTCTCTTTTGAAACAAATGGCTCCCGAGCATCTTCTGGCCCCCTTTGCAAAGTTATGTGCAGAAGTTCTTGTTGCAGCATCCGATGGTATGCTCAA
TATAGATGATACTACTGCACGTTCTGTTTTACAGGATACCTTTGAGATTCTTGCTTGTAAAGAGATTCGACTATCAATAAATCGAGTATCATCATCAGAATCTGGTGATG
TAGGTGAGGAAGGGGGTGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGGTCATCACTCACGCAGTGAGAAAGAGTCTCATACAAAACACCATACCCATCTTCATTGAG
TTAAAAAGGCTAATGGAAAGCAAGAATAGGTATGGTGTTTTAACTCAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRIYVSLLKQMAPEHLLAPFAKLCAEVLVAASDGMLNIDDTTARSVLQDTFEILACKEIRLSINRVSSSESGDVGEEGGESGGASAARGKVITHAVRKSLIQNTIPIFIE
LKRLMESKNRYGVLTQ

CSPI01G03860 (gene) of Cucumber (PI 183967) v1 genome