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CSPI01G04670 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G04670
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSm domain-containing protein
Genome locationChr1:2917152..2919403
RNA-Seq ExpressionCSPI01G04670
SyntenyCSPI01G04670
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444477.1 PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]2.4e-5397.32Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]4.0e-56100Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]3.5e-5293.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]9.2e-5394.64Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_038893823.1 uncharacterized protein LOC120082644 [Benincasa hispida]4.6e-5292.86Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GSMVQDGSNVESNPESLD +GKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNIILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+D
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDE+LALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein1.9e-56100Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A1S3BAH4 uncharacterized protein LOC1034877841.2e-5397.32Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 21.2e-5397.32Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341491.7e-5293.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956141.4e-5191.96Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
A2BIG9 N-alpha-acetyltransferase 38, NatC auxiliary subunit5.7e-0539.19Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDS
        K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +   S S  E R LGL +IP    VS  V++
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDS

A4IGZ4 N-alpha-acetyltransferase 38, NatC auxiliary subunit4.4e-0535.35Show/hide
Query:  QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        +E+G S        +S+ E+ D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B1.8e-0634.94Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL
        K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+  L
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL

Q6GQ67 N-alpha-acetyltransferase 38-A, NatC auxiliary subunit2.6e-0536.36Show/hide
Query:  QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        +E+G S     S  +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Q6NU60 N-alpha-acetyltransferase 38-B, NatC auxiliary subunit2.8e-0437.93Show/hide
Query:  SNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+VES  ++  H  K+  LL R M I + DGR  +G F C D+  N+IL  A E+      S    E R LGL ++P    VS  V+
Subjt:  SNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein6.8e-3867.86Show/hide
Query:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQ +  S     S  E +    D I ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD
Subjt:  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
         +IDEQL+L+ +
Subjt:  STIDEQLALLSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGGA
GCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTA
TCAGTTTAG
mRNA sequenceShow/hide mRNA sequence
TAAAAACCAAATGGACACCTATGTTAGTGTATGTAAAAGTGTGTATATTTTTTTGATTACAAGAGGTAGAGATTGTTGAGATGCGTTTTTGATTTAGATCCTATTGTTAC
TCCTCCACGCTCTCTCCATCTCTCTCTCTTTCATCCACGAGAAGCCAAGAATCACAATCGGCTCCCAAGTTCCCCTCTGCTCCGCCGTCCCTGGATCAGTTGAAGTAACC
ATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTC
GAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGG
CGGAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATT
GCTATCAGTTTAGCAAATATAAGATGAAGCCTGAGATTAAGAAGGGATGAAAAAAATGTGCACGCTTCTTTGATGAATTTGACTGTTTATATTGTTACAGAAAAATTCTA
AAACATCTTGATGTTTTTAGTGGAAATATGGGATTAGGAAATACGATTTGTTTCTCTTATGGGTAAGATATTGTCGCTTTCTTTATTAAGTTGAAGAGTGGATGCAAAGT
AGGAGGAACCTTTGAAAAGATTGTGGAAGAAACCCGGAGGCTTGATAAAGTTATTGTTTTTTAGGGAAAATTATCCCAAGTTTGGAATAACATGTG
Protein sequenceShow/hide protein sequence
MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SV