; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G04960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G04960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein-serine/threonine phosphatase
Genome locationChr1:3216146..3217076
RNA-Seq ExpressionCSPI01G04960
SyntenyCSPI01G04960
Gene Ontology termsGO:0006369 - termination of RNA polymerase II transcription (biological process)
GO:0006378 - mRNA polyadenylation (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006470 - protein dephosphorylation (biological process)
GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component)
GO:0004722 - protein serine/threonine phosphatase activity (molecular function)
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domainsIPR006811 - RNA polymerase II subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137380.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus]4.8e-63100Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DGSFDVVFTFEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

XP_008446784.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo]4.8e-63100Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DGSFDVVFTFEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

XP_022997876.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima]2.4e-6299.17Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DG FDVVFTFEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

XP_038895501.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1 [Benincasa hispida]1.1e-6299.17Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DGSFDVVFTFEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

XP_038895502.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2 [Benincasa hispida]1.1e-6299.17Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DGSFDVVFTFEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

TrEMBL top hitse value%identityAlignment
A0A0A0LQ65 Protein-serine/threonine phosphatase4.7e-64100Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIEG
        DGSFDVVFTFEEKVFDMVIEG
Subjt:  DGSFDVVFTFEEKVFDMVIEG

A0A1S3BFX9 Protein-serine/threonine phosphatase2.3e-63100Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DGSFDVVFTFEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

A0A6J1C6C8 Protein-serine/threonine phosphatase2.0e-6298.33Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNA VKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DGSFDVVF+FEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

A0A6J1G9U0 Protein-serine/threonine phosphatase1.1e-6299.17Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DG FDVVFTFEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

A0A6J1K8Q5 Protein-serine/threonine phosphatase1.1e-6299.17Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DG FDVVFTFEEKVFDMVIE
Subjt:  DGSFDVVFTFEEKVFDMVIE

SwissProt top hitse value%identityAlignment
Q17QI2 RNA polymerase II subunit A C-terminal domain phosphatase SSU728.2e-3460.68Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIE
        FD++ T EE+V+D V+E
Subjt:  FDVVFTFEEKVFDMVIE

Q5ZJQ7 RNA polymerase II subunit A C-terminal domain phosphatase SSU728.2e-3460.68Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIE
        FD++ T EE+V+D V+E
Subjt:  FDVVFTFEEKVFDMVIE

Q6PC19 RNA polymerase II subunit A C-terminal domain phosphatase SSU724.8e-3458.97Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PN+YDF T Y+ M++DL RKD ELY +NGIL ML RN  +K+ P+R+Q  +    
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIE
        FD+V T EE+V+D V+E
Subjt:  FDVVFTFEEKVFDMVIE

Q9CY97 RNA polymerase II subunit A C-terminal domain phosphatase SSU726.3e-3460.68Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIE
        FD++ T EE+V+D V+E
Subjt:  FDVVFTFEEKVFDMVIE

Q9NP77 RNA polymerase II subunit A C-terminal domain phosphatase SSU728.2e-3460.68Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVFTFEEKVFDMVIE
        FD++ T EE+V+D V+E
Subjt:  FDVVFTFEEKVFDMVIE

Arabidopsis top hitse value%identityAlignment
AT1G73820.1 Ssu72-like family protein1.0e-5581.67Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK MFD+LRRKDPELYKRNGIL M+KRN +VK APQRWQDNA 
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVFTFEEKVFDMVIE
        DG FDVV TFEEKVFD V+E
Subjt:  DGSFDVVFTFEEKVFDMVIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAACTGGGGC
TCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAACTATACA
AGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTT
GAAGAGAAGGTCTTTGATATGGTTATTGAAGGTTAA
mRNA sequenceShow/hide mRNA sequence
TGCTAAAGAGCCTTGGGCATCCATTTAACAAAGATTTCGAGAACATATTTGTAGGACGTGACAACCAGCTCAGCTCAATAGCTGAATTAAGGGTGAAATAACTTTCTTGT
CAGAATTAATATTTGCCATTTACCTTAGTTTCCCTTACTAGTAGCGCAGCGGAGTGTTCCAAATTGTATCTTGGTGGCTACTCCCCTATTACTCGTACCAACATCGAAAA
TTCACCATGAAGTATCGTTATGCAATGGTTTGCTCCTCCAACCAGAATCGAAGCATGGAGGCTCACTCCATCCTTAAAAGCAAGGGTTTCAACGTTTCATCCTATGGAAC
TGGGGCTCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTACGTCGAAAGGATCCTGAAC
TATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTT
ACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGGTTAAGTTGCCTACTTCTTCAATTTATGCTAGTGAGAGTTATGCCCGTTTATCCATGCTCATTTTGGTGCTCT
TGTGAAAGTTAATGGCACTGTACAATAGTAGAACTAGAACCCGTGTGATGATATTACAGCGATTTACTTTCAAGCATTTATTTTGAATGCCTATGCTTAGTGTTAAATTA
CTCTTATAGTTATATCCAAAGTCT
Protein sequenceShow/hide protein sequence
MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTF
EEKVFDMVIEG