| GenBank top hits | e value | %identity | Alignment |
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| KAA0033137.1 polyprotein [Cucumis melo var. makuwa] | 1.9e-37 | 49.19 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGH
LNNVT+ KFP+P+++ELF+EL GA I+M P D+E AF T+EGHYEFLVMPF L NAP TFQALMNQ+FK YLR + YLGH
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGH
Query: IISSEGVEADPNKIRAVLDWPATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMVTLPVL
IS +G+E DP KI+A+ +WP T +REV FL GAYQW EA FE LK AM+TLPVL
Subjt: IISSEGVEADPNKIRAVLDWPATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMVTLPVL
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| KAA0037052.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | 8.2e-36 | 48.37 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGH
LNNVT+ DKFP+ +++ELF+ELNG IRM P D+E AF T+EGHYEFLVMPF L NAP TFQALMNQ+FK Y+R + YLGH
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGH
Query: IISSEGVEADPNKIRAVLDWPATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMVTLPV
IS + +E DP KIRA+ +WP T +REV FL GAY+W EA+ AFE LK AM+TLP+
Subjt: IISSEGVEADPNKIRAVLDWPATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMVTLPV
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| KAA0066118.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.8e-35 | 41.67 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
LNNVTV DKFP+P+V+ELF+ELNGA IRMHP D+E AF T+EGHYEF+VMPF L NAP TFQALMNQ+FK +LR
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
Query: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
+ YLGH IS +G+E DP KIRAV +WPA + +RE+ FL
Subjt: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
Query: --GAYQWLAEANEAFEGLKNAMVTLPVL
GAY+W E AFE LK AM+TLPVL
Subjt: --GAYQWLAEANEAFEGLKNAMVTLPVL
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| TYK06599.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | 8.2e-36 | 48.37 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGH
LNNVT+ DKFP+ +++ELF+ELNG IRM P D+E AF T+EGHYEFLVMPF L NAP TFQALMNQ+FK Y+R + YLGH
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGH
Query: IISSEGVEADPNKIRAVLDWPATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMVTLPV
IS + +E DP KIRA+ +WP T +REV FL GAY+W EA+ AFE LK AM+TLP+
Subjt: IISSEGVEADPNKIRAVLDWPATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMVTLPV
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| TYK15157.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.8e-35 | 41.67 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
LNNVTV DKFP+P+V+ELF+ELNGA IRMHP D+E AF T+EGHYEF+VMPF L NAP TFQALMNQ+FK +LR
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
Query: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
+ YLGH IS +G+E DP KIRAV +WPA + +RE+ FL
Subjt: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
Query: --GAYQWLAEANEAFEGLKNAMVTLPVL
GAY+W E AFE LK AM+TLPVL
Subjt: --GAYQWLAEANEAFEGLKNAMVTLPVL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SUY2 Polyprotein | 9.4e-38 | 49.19 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGH
LNNVT+ KFP+P+++ELF+EL GA I+M P D+E AF T+EGHYEFLVMPF L NAP TFQALMNQ+FK YLR + YLGH
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGH
Query: IISSEGVEADPNKIRAVLDWPATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMVTLPVL
IS +G+E DP KI+A+ +WP T +REV FL GAYQW EA FE LK AM+TLPVL
Subjt: IISSEGVEADPNKIRAVLDWPATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMVTLPVL
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| A0A5A7U2S1 Ty3/gypsy retrotransposon protein | 1.2e-35 | 41.67 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
LNNVTV DKFP+P+V+ELF+ELNGA IRMHP D+E AF T+EGHYEF+VMPF L NAP TFQALMNQ+FK +LR
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
Query: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
+ YLGH IS +G+E DP KIRAV +WPA +RE+ FL
Subjt: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
Query: --GAYQWLAEANEAFEGLKNAMVTLPVL
GAY+W E AFE LK AM+TLPVL
Subjt: --GAYQWLAEANEAFEGLKNAMVTLPVL
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| A0A5A7VEI2 Ty3/gypsy retrotransposon protein | 8.8e-36 | 41.67 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
LNNVTV DKFP+P+V+ELF+ELNGA IRMHP D+E AF T+EGHYEF+VMPF L NAP TFQALMNQ+FK +LR
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
Query: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
+ YLGH IS +G+E DP KIRAV +WPA + +RE+ FL
Subjt: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
Query: --GAYQWLAEANEAFEGLKNAMVTLPVL
GAY+W E AFE LK AM+TLPVL
Subjt: --GAYQWLAEANEAFEGLKNAMVTLPVL
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| A0A5D3CTA1 Ty3/gypsy retrotransposon protein | 8.8e-36 | 41.67 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
LNNVTV DKFP+P+V+ELF+ELNGA IRMHP D+E AF T+EGHYEF+VMPF L NAP TFQALMNQ+FK +LR
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
Query: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
+ YLGH IS +G+E DP KIRAV +WPA + +RE+ FL
Subjt: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
Query: --GAYQWLAEANEAFEGLKNAMVTLPVL
GAY+W E AFE LK AM+TLPVL
Subjt: --GAYQWLAEANEAFEGLKNAMVTLPVL
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| A0A5D3CXB1 Ty3/gypsy retrotransposon protein | 1.2e-35 | 41.67 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
LNNVTV DKFP+P+V+ELF+ELNGA IRMHP D+E AF T+EGHYEF+VMPF L NAP TFQALMNQ+FK +LR
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLR------------
Query: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
+ YLGH IS +G+E DP KIRAV +WPA +RE+ FL
Subjt: ------------------------------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL------------------------
Query: --GAYQWLAEANEAFEGLKNAMVTLPVL
GAY+W E AFE LK AM+TLPVL
Subjt: --GAYQWLAEANEAFEGLKNAMVTLPVL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04323 Retrovirus-related Pol polyprotein from transposon 17.6 | 5.4e-14 | 28.25 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLRK-----------
LN +TV D+ P+P +DE+ +L I M P + AF T GHYE+L MPF L NAP TFQ MN I + L K
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLRK-----------
Query: -------------------------------------SEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFLG
+ +LGH+++ +G++ +P KI A+ +P T +E+ +FLG
Subjt: -------------------------------------SEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFLG
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| P20825 Retrovirus-related Pol polyprotein from transposon 297 | 3.1e-14 | 27.18 | Show/hide |
Query: KYDDVFDLQKNCLRAGEVLNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQI
KY V D +K LN +T+ D++P+P +DE+ +L I M + AF T GHYE+L MPF L NAP TFQ MN I
Subjt: KYDDVFDLQKNCLRAGEVLNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQI
Query: FKSYLRK------------------------------------------------SEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFLG
+ L K + +LGHI++ +G++ +P K++A++ +P T +E+ +FLG
Subjt: FKSYLRK------------------------------------------------SEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFLG
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| Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus | 1.0e-12 | 26.55 | Show/hide |
Query: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLRK-----------
LN VT+ D +P+P ++ L A I M +D+ AF T G YEFL +PF L NAP FQ +++ I + ++ K
Subjt: LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLRK-----------
Query: -------------------------------------SEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFLG
E+LG+I++++G++ADP K+RA+ + P T ++E+ FLG
Subjt: -------------------------------------SEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFLG
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| Q9CY97 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 | 1.9e-11 | 32.26 | Show/hide |
Query: KNGVAPSLFLETPLQKKP-----CMDLSKLFITFQDARKFGDNRLGCHREPHLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWED
+NG+ L ++ +P C DL L +T ++ R+ LN+R+ + V +VN++++DNHEEA +GA L +LCQ I+ TE E+
Subjt: KNGVAPSLFLETPLQKKP-----CMDLSKLFITFQDARKFGDNRLGCHREPHLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWED
Query: SIDDIVINFEKQLRRKLLYSISFY
ID+++ FE++ R L+++ FY
Subjt: SIDDIVINFEKQLRRKLLYSISFY
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| Q9NP77 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 | 1.9e-11 | 32.26 | Show/hide |
Query: KNGVAPSLFLETPLQKKP-----CMDLSKLFITFQDARKFGDNRLGCHREPHLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWED
+NG+ L ++ +P C DL L +T ++ R+ LN+R+ + V +VN++++DNHEEA +GA L +LCQ I+ TE E+
Subjt: KNGVAPSLFLETPLQKKP-----CMDLSKLFITFQDARKFGDNRLGCHREPHLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWED
Query: SIDDIVINFEKQLRRKLLYSISFY
ID+++ FE++ R L+++ FY
Subjt: SIDDIVINFEKQLRRKLLYSISFY
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