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CSPI01G05420 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G05420
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontranscription factor PRE5-like
Genome locationChr1:3502118..3502449
RNA-Seq ExpressionCSPI01G05420
SyntenyCSPI01G05420
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584448.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]2.5e-2681.48Show/hide
Query:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLS
        MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  EILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVK LL+
Subjt:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLS

TYJ98875.1 transcription factor PRE5-like [Cucumis melo var. makuwa]8.2e-3090.67Show/hide
Query:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEM
        MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETCDYIKKLQ+EVDDLSERLWKQLDSMG+DFEM
Subjt:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEM

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]1.2e-3390.36Show/hide
Query:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT
        MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETCDYIKKLQ+EVDDLSERLWKQLDSMG+DFEMVKDLL FT
Subjt:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]8.1e-38100Show/hide
Query:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT
        MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT
Subjt:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]2.5e-2680.49Show/hide
Query:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSS--EVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLL
        MASSKL DD+L+NLV KLQTLLP LN KP N S   VSA +ILKETCDYIKKLQREVDDLSERLWKQLDSMG+D EMVKDL+
Subjt:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSS--EVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLL

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein3.9e-38100Show/hide
Query:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT
        MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT
Subjt:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT

A0A1S3B0J1 transcription factor PRE5-like5.9e-3490.36Show/hide
Query:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT
        MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETCDYIKKLQ+EVDDLSERLWKQLDSMG+DFEMVKDLL FT
Subjt:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT

A0A5A7SZP9 Transcription factor PRE5-like5.9e-3490.36Show/hide
Query:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT
        MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETCDYIKKLQ+EVDDLSERLWKQLDSMG+DFEMVKDLL FT
Subjt:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT

A0A5B6V213 Transcription factor ILI3-like6.8e-1457.32Show/hide
Query:  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGI---DFEMVKDLL
        AS+K+ DDEL  L+ +L TLLPQLNH  H  +  S  +ILKETC YI++LQ+EVDDLSERL + LDSM I   D E + +LL
Subjt:  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGI---DFEMVKDLL

A0A5D3BKI2 Transcription factor PRE5-like4.0e-3090.67Show/hide
Query:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEM
        MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETCDYIKKLQ+EVDDLSERLWKQLDSMG+DFEM
Subjt:  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEM

SwissProt top hitse value%identityAlignment
A2X9L8 Transcription factor ILI59.8e-1054.39Show/hide
Query:  LGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERL
        + ++E+  L+SKLQ+LLP  N +   SS+ S  ++LKETC+YIK L REVDDLS+RL
Subjt:  LGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERL

A2XD15 Transcription factor ILI32.6e-1044.3Show/hide
Query:  KLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSER---LWKQLDSMGIDFEMVKDLL
        ++ D+E+  L+SKLQ LLP+ + +   +S  SA ++LKETC YIK L REVDDLS+R   L   +D+     E+++ LL
Subjt:  KLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSER---LWKQLDSMGIDFEMVKDLL

Q10R47 Transcription factor ILI32.6e-1044.3Show/hide
Query:  KLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSER---LWKQLDSMGIDFEMVKDLL
        ++ D+E+  L+SKLQ LLP+ + +   +S  SA ++LKETC YIK L REVDDLS+R   L   +D+     E+++ LL
Subjt:  KLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSER---LWKQLDSMGIDFEMVKDLL

Q8GW32 Transcription factor PRE63.6e-1244.58Show/hide
Query:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQL---DSMGIDFEMVKDLLSF
        SS++ DD++ +LVSKLQ L+P+L  +   S +VSA ++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL++
Subjt:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQL---DSMGIDFEMVKDLLSF

Q9LJX1 Transcription factor PRE54.7e-1250Show/hide
Query:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGID
        +S++ DD++ +LVSKL+  LP++ H+   S +VSA ++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGID

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.5e-1344.58Show/hide
Query:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQL---DSMGIDFEMVKDLLSF
        SS++ DD++ +LVSKLQ L+P+L  +   S +VSA ++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL++
Subjt:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQL---DSMGIDFEMVKDLLSF

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 19.0e-1150Show/hide
Query:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERL
        +S++ +D++ +L+ KLQ LLP+L      S +VSA  +L++TC+YI+ L REVDDLSERL
Subjt:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.3e-1350Show/hide
Query:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGID
        +S++ DD++ +LVSKL+  LP++ H+   S +VSA ++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGID

AT5G15160.1 BANQUO 26.9e-1142.65Show/hide
Query:  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSM
        +SS++ DD++ +L+SKL+  +P++      S+ VSA ++L+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSM

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-1042.25Show/hide
Query:  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGID
        ++ ++ D+++ +LVSKL+ +LP++  +   S + SA ++L+ETC+YI+ L REVD+LSERL + L+S+  D
Subjt:  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCAAATTAGGTGATGATGAGCTTAAAAATCTTGTCTCCAAATTGCAAACTTTGCTCCCTCAACTCAACCATAAGCCCCACAACTCCTCTGAGGTATCGGC
GGGGGAGATATTGAAGGAGACGTGTGATTATATAAAGAAGTTGCAAAGGGAAGTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTATTGACTTTG
AAATGGTTAAAGATCTTCTAAGTTTTACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCCAAATTAGGTGATGATGAGCTTAAAAATCTTGTCTCCAAATTGCAAACTTTGCTCCCTCAACTCAACCATAAGCCCCACAACTCCTCTGAGGTATCGGC
GGGGGAGATATTGAAGGAGACGTGTGATTATATAAAGAAGTTGCAAAGGGAAGTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTATTGACTTTG
AAATGGTTAAAGATCTTCTAAGTTTTACTTAA
Protein sequenceShow/hide protein sequence
MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT