CuGenDBv2

Gene ID	CSPI01G05910
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	F-box protein At3g07870-like
Genome location	Chr1:3722807..3723448
RNA-Seq Expression	CSPI01G05910
Synteny	CSPI01G05910
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR017451 - F-box associated interaction domain IPR036047 - F-box-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KGN64030.1 hypothetical protein Csa_013491 [Cucumis sativus]

2.1e-74

100

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Query:  RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGE
        RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGE
Subjt:  RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGE

Query:  LLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRH
        LLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRH
Subjt:  LLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRH

TYJ98917.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa]

9.5e-83

78.54

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Query:  SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVN
        +IIDSELPSDILLQILL LQPFS LFTCRLVSK WN CISSFKF+SNLFITQI  SR RRR+RNR  CVDL+P   +G+NL+GSFKLH SW SSSTGIVN
Subjt:  SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVN

Query:  SCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDG---KVQSQWRQVASMSTTYKMYR
         CNG LCILN KRVA+LNPMTNEYMELPS T+Y+ SVYGLGYSPKTK YKV RHS+KN EL VEILAF TSL DQDG   +VQSQWR V S+STTYKM+R
Subjt:  SCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDG---KVQSQWRQVASMSTTYKMYR

Query:  HGTYF
        HGTYF
Subjt:  HGTYF

XP_004137594.1 F-box protein At5g65850 [Cucumis sativus]

1.3e-119

100

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Query:  MGKKWNSKSIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWC
        MGKKWNSKSIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWC
Subjt:  MGKKWNSKSIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWC

Query:  SSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTT
        SSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTT
Subjt:  SSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTT

Query:  YKMYRHGTYFYNL
        YKMYRHGTYFYNL
Subjt:  YKMYRHGTYFYNL

XP_008447090.1 PREDICTED: F-box/LRR-repeat protein At2g43260-like [Cucumis melo]

9.5e-83

78.54

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Query:  SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVN
        +IIDSELPSDILLQILL LQPFS LFTCRLVSK WN CISSFKF+SNLFITQI  SR RRR+RNR  CVDL+P   +G+NL+GSFKLH SW SSSTGIVN
Subjt:  SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVN

Query:  SCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDG---KVQSQWRQVASMSTTYKMYR
         CNG LCILN KRVA+LNPMTNEYMELPS T+Y+ SVYGLGYSPKTK YKV RHS+KN EL VEILAF TSL DQDG   +VQSQWR V S+STTYKM+R
Subjt:  SCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDG---KVQSQWRQVASMSTTYKMYR

Query:  HGTYF
        HGTYF
Subjt:  HGTYF

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]

5.8e-32

44.16

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Query:  MGKKWNSK-SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFE-----SNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFK
        M KK  SK    +SELP DIL  I  KL PF NL TCRLVS  WN+ + S KF+     SNLF       R+R        CVDLDP+H +GM+ + SF 
Subjt:  MGKKWNSK-SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFE-----SNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFK

Query:  LHSSWCSSS--TGIVNSCNGFLCILNTKR---------VAMLNPMTNEYMELPSSTQYELSV----YGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTS
         H +  S S    I+NSC+G + +L TKR         V +LNPMTNEY +LP+      SV    YGLG+SP+TK YK+ R  Y   E +VEI AFGTS
Subjt:  LHSSWCSSS--TGIVNSCNGFLCILNTKR---------VAMLNPMTNEYMELPSSTQYELSV----YGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTS

Query:  LEDQDGKVQSQWRQVASMSTTYKMYRHGTYF
         E         W  V S+      Y HG YF
Subjt:  LEDQDGKVQSQWRQVASMSTTYKMYRHGTYF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQ77 Uncharacterized protein

1.0e-74

100

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Query:  RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGE
        RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGE
Subjt:  RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGE

Query:  LLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRH
        LLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRH
Subjt:  LLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRH

A0A1S3BGK6 F-box/LRR-repeat protein At2g43260-like

4.6e-83

78.54

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Query:  SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVN
        +IIDSELPSDILLQILL LQPFS LFTCRLVSK WN CISSFKF+SNLFITQI  SR RRR+RNR  CVDL+P   +G+NL+GSFKLH SW SSSTGIVN
Subjt:  SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVN

Query:  SCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDG---KVQSQWRQVASMSTTYKMYR
         CNG LCILN KRVA+LNPMTNEYMELPS T+Y+ SVYGLGYSPKTK YKV RHS+KN EL VEILAF TSL DQDG   +VQSQWR V S+STTYKM+R
Subjt:  SCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDG---KVQSQWRQVASMSTTYKMYR

Query:  HGTYF
        HGTYF
Subjt:  HGTYF

A0A1S3BQV8 putative F-box protein At3g21120

1.8e-31

40.57

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Query:  ELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSST--GIVNSCN
        ELP DIL QI  K+ PF NL TCRLVS+ WN+ ISS KF+ +  I  +  +R          CV+ DP+H +GM+++ SF  H  +CS+S+   I+NSC+
Subjt:  ELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSST--GIVNSCN

Query:  GFLCILNTKR---------VAMLNPMTNEYMELPS----STQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMS
        G + +L TKR         V +LNP+TNEY + P+      +     YGLG+SPKT  YK+ R  + + E +V+I AFGTS E         W  + S+ 
Subjt:  GFLCILNTKR---------VAMLNPMTNEYMELPS----STQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMS

Query:  TTYKMYRHGTYF
             Y HG YF
Subjt:  TTYKMYRHGTYF

A0A5D3BIH1 F-box/LRR-repeat protein

4.6e-83

78.54

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Query:  SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVN
        +IIDSELPSDILLQILL LQPFS LFTCRLVSK WN CISSFKF+SNLFITQI  SR RRR+RNR  CVDL+P   +G+NL+GSFKLH SW SSSTGIVN
Subjt:  SIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVN

Query:  SCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDG---KVQSQWRQVASMSTTYKMYR
         CNG LCILN KRVA+LNPMTNEYMELPS T+Y+ SVYGLGYSPKTK YKV RHS+KN EL VEILAF TSL DQDG   +VQSQWR V S+STTYKM+R
Subjt:  SCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDG---KVQSQWRQVASMSTTYKMYR

Query:  HGTYF
        HGTYF
Subjt:  HGTYF

A0A5D3CIX9 Putative F-box protein

1.8e-31

40.57

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Query:  ELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSST--GIVNSCN
        ELP DIL QI  K+ PF NL TCRLVS+ WN+ ISS KF+ +  I  +  +R          CV+ DP+H +GM+++ SF  H  +CS+S+   I+NSC+
Subjt:  ELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSST--GIVNSCN

Query:  GFLCILNTKR---------VAMLNPMTNEYMELPS----STQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMS
        G + +L TKR         V +LNP+TNEY + P+      +     YGLG+SPKT  YK+ R  + + E +V+I AFGTS E         W  + S+ 
Subjt:  GFLCILNTKR---------VAMLNPMTNEYMELPS----STQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMS

Query:  TTYKMYRHGTYF
             Y HG YF
Subjt:  TTYKMYRHGTYF

SwissProt top hits

e value

%identity

Alignment

Q9FT50 Putative F-box protein At3g52320

1.7e-05

27.45

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Query:  ELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPS-----RNRRRNRNRFDCV--DLDPKHFDGMNLIGSFKLHSSWCSSSTGI
        E+P ++L+ IL++L P  +L   + VSK+W   I+S ++ +N F    SPS        R N++++  +      +H      +     HS+       +
Subjt:  ELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPS-----RNRRRNRNRFDCV--DLDPKHFDGMNLIGSFKLHSSWCSSSTGI

Query:  VNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKV
        VN+  G LC    +RV + NP T + +ELP            G+ P    YKV
Subjt:  VNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKV

Arabidopsis top hits

e value

%identity

Alignment

AT3G10240.1 F-box and associated interaction domains-containing protein

7.2e-04

26.29

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Query:  SELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKH---FDGMN-------LIGSFKLHSSWCSS
        S +P D++ +ILL+L P  ++   R VSK W+  I++  +  NL  T+ SP        N    V   P+H   F+  N       LI  + +  S   +
Subjt:  SELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKH---FDGMN-------LIGSFKLHSSWCSS

Query:  STGIVNSCNGFLCILNTKRVAMLNPMTNEYMEL--PSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQV
              S NG +C   + R+ + NP T + + L  P+    +L+++ LGY P    +KV    +        +L  G++        Q  WR V
Subjt:  STGIVNSCNGFLCILNTKRVAMLNPMTNEYMEL--PSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQV

AT3G52320.1 F-box and associated interaction domains-containing protein

1.2e-06

27.45

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Query:  ELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPS-----RNRRRNRNRFDCV--DLDPKHFDGMNLIGSFKLHSSWCSSSTGI
        E+P ++L+ IL++L P  +L   + VSK+W   I+S ++ +N F    SPS        R N++++  +      +H      +     HS+       +
Subjt:  ELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPS-----RNRRRNRNRFDCV--DLDPKHFDGMNLIGSFKLHSSWCSSSTGI

Query:  VNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKV
        VN+  G LC    +RV + NP T + +ELP            G+ P    YKV
Subjt:  VNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGGAAGAAGTGGAACAGCAAGAGCATAATAGATTCAGAGCTTCCATCCGATATTCTTCTCCAAATATTGTTGAAGCTTCAACCATTTTCCAATTTATTCACTTGCAG
GCTAGTGAGTAAAGTTTGGAACGATTGCATTTCAAGTTTTAAGTTTGAGTCCAACCTTTTCATTACCCAAATTTCTCCTAGTCGTAATCGTAGACGTAATCGTAATCGCT
TTGACTGTGTGGACTTGGATCCTAAACATTTTGATGGGATGAATCTTATTGGGTCATTTAAGTTGCATTCTTCATGGTGCTCCTCCTCTACTGGAATTGTCAATAGTTGT
AATGGATTTCTTTGTATCTTGAATACCAAACGTGTTGCAATGTTAAATCCTATGACAAATGAGTACATGGAGCTTCCGAGTAGTACTCAATATGAGTTGTCCGTTTATGG
ACTTGGTTATAGTCCCAAGACAAAGGGGTACAAAGTAGGAAGACATTCGTACAAAAATGGTGAGTTGTTAGTAGAGATTTTAGCATTTGGCACAAGTTTGGAGGATCAAG
ATGGGAAGGTTCAAAGTCAATGGAGACAGGTAGCTAGCATGAGTACAACCTATAAAATGTATCGCCATGGTACTTACTTCTACAACCTATAA

mRNA sequence

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Protein sequence

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MGKKWNSKSIIDSELPSDILLQILLKLQPFSNLFTCRLVSKVWNDCISSFKFESNLFITQISPSRNRRRNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSC
NGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRHGTYFYNL

CSPI01G05910 (gene) of Cucumber (PI 183967) v1 genome