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CSPI01G05960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G05960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLYR motif-containing protein 4
Genome locationChr1:3742159..3742425
RNA-Seq ExpressionCSPI01G05960
SyntenyCSPI01G05960
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5807263.1 putative complex 1 LYR protein [Helianthus annuus]9.6e-2975Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
        MATPS SEIL+LFRSLLR+ARQFPDYNIREY KRRTID+FR N+TLS+ SSI++ ++ G++QL+VAKRQA+VYSLYAPK+KSIMD+ H
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
KAG6607477.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]3.8e-3389.66Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVN
        MA PS SEIL+LFRSLLRTARQFPDYNIREY KRRTID+FRENQ+LSD SSISSVYAGG+AQLEVAKRQA+VYSLYAPKVKSIMDVN
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVN
KGN64034.1 hypothetical protein Csa_014098 [Cucumis sativus]3.0e-38100Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
        MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
XP_022137452.1 LYR motif-containing protein 4 [Momordica charantia]6.0e-3187.21Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDV
        MATPS SEILSLFRSLLRTARQF DYNIREY KRR ID+FREN++LSD SSISS YAGG+AQLEVAKRQA+VYSLYAPKVKSIMDV
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDV
XP_038894896.1 LYR motif-containing protein 4 [Benincasa hispida]4.4e-3490.8Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVN
        MATPS SE+LSLFRSLLRTARQFPDYNIREY KRRTID+FRENQ+LSDASSISS YAGG+AQLEVAKRQA+VYSLYAPKVKSIMDVN
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVN
TrEMBL top hitse value%identityAlignment
A0A0A0LST7 Uncharacterized protein1.4e-38100Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
        MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
A0A1S3XFP4 LYR motif-containing protein 41.5e-2772.41Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVN
        MA+PS  E+L+LFRSLL+TARQFPDYNIREY KRRTID FR+N+ LSD S +++ ++ GRAQLEVAKRQA+VYSLYAPKVKS+M++N
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVN
A0A251UU63 Putative complex 1 LYR protein4.6e-2975Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
        MATPS SEIL+LFRSLLR+ARQFPDYNIREY KRRTID+FR N+TLS+ SSI++ ++ G++QL+VAKRQA+VYSLYAPK+KSIMD+ H
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
A0A2J6KBZ0 Uncharacterized protein8.7e-2872.09Show/hide
Query:  TPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
        TPS +EI++LFRSLLR+ARQFPDYNIREY KRRTID+FR+N+TLS+ SSI++ +  G++QL+VAKRQA+VYSLYAPK+KSIMD+ H
Subjt:  TPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
A0A6J1C8A4 LYR motif-containing protein 42.9e-3187.21Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDV
        MATPS SEILSLFRSLLRTARQF DYNIREY KRR ID+FREN++LSD SSISS YAGG+AQLEVAKRQA+VYSLYAPKVKSIMDV
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDV
SwissProt top hitse value%identityAlignment
B5X5U9 LYR motif-containing protein 4A4.8e-0735.53Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLY
        MA  S ++++SL+R L++ +++FP YN R Y  RR  DSFREN  + +  ++  +    R  L V +RQ  +  +Y
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLY
B5XD90 LYR motif-containing protein 4B1.9e-0835Show/hide
Query:  TSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMD
        T+++LSL+R L++ + +FP YN R Y  RR  D+FR N+++ D   +  +   GR  L++ +RQ  +  +Y P  K+I++
Subjt:  TSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMD
B8JLQ0 LYR motif-containing protein 44.8e-0736.36Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYA
        MA+ S ++++SL+R L++ +++FP YN R Y  RR  D FREN  + +  ++  +    R  L V KRQ  +  LY+
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYA
Q6DCS1 LYR motif-containing protein 48.2e-0732.95Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
        M+  S S++LSL++ +LR +++F  YN R Y  RR  D+FRE + + D   I ++    +  L V +RQ  +  +YA     I    H
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH
Q9HD34 LYR motif-containing protein 41.6e-0737.66Show/hide
Query:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYA
        MA  S +++LSL+R++LR +++F  YN R Y  RR  D+FREN+ + D   I ++    +  L V +RQ  +  LY+
Subjt:  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYA
Arabidopsis top hitse value%identityAlignment
AT5G61220.1 LYR family of Fe/S cluster biogenesis protein5.1e-2058.54Show/hide
Query:  STSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDV
        S+SE+LSL R+LLR  RQFPDYNIREY KRRT+D FR N+ L+D S ++  YA  + QL VA+R   VY  Y PK K+IM+V
Subjt:  STSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCGTCCACCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACCGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCAT
TGATTCTTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCCATCTCCTCCGTCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCATTGTTTACT
CTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTCCGTCCACCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACCGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCAT
TGATTCTTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCCATCTCCTCCGTCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCATTGTTTACT
CTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACCATTGA
Protein sequenceShow/hide protein sequence
MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH