; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G06240 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G06240
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRHOMBOID-like protein 12, mitochondrial
Genome locationChr1:3912853..3914659
RNA-Seq ExpressionCSPI01G06240
SyntenyCSPI01G06240
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN64066.1 hypothetical protein Csa_013348 [Cucumis sativus]5.9e-13497.87Show/hide
Query:  MNRLFSLSRIHASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWK
        MNRLFSLSRI ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWK
Subjt:  MNRLFSLSRIHASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWK

Query:  WHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRIQNSKQHKDSQFTMKNPERVLDGLITGSFMIGMDMLRLPEN
        WHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTR+QNSKQHKDSQFTMKNPERVLDGLITGSF+IG+DMLRLPEN
Subjt:  WHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRIQNSKQHKDSQFTMKNPERVLDGLITGSFMIGMDMLRLPEN

Query:  DNQISRSIHLWGTAFPASIHALSEYQKNFRTRNYV
        DNQISRSIHLWGTAFPASIHALSEYQKNF TRNYV
Subjt:  DNQISRSIHLWGTAFPASIHALSEYQKNFRTRNYV

TYJ98948.1 RHOMBOID-like protein 12 [Cucumis melo var. makuwa]6.3e-1126.69Show/hide
Query:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG----
        +L R H  + L  SF T  L  DHSRSWSSH SF +KI+GF SVP  GKR + N SNT F+ S++               +++ +LK  F HQWGG    
Subjt:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG----

Query:  --SLQTKN--------NCCVDYYW----------------------KWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTC
           L  K+        N  V   W                      + H  I    + +D     +  +    +      +     L K      I  + 
Subjt:  --SLQTKN--------NCCVDYYW----------------------KWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTC

Query:  SCHLTRIQNSKQHKDSQFTMKNPERV--------------------------------LDGLITGSFMIGMDMLRLPENDNQISRSIHLWGTAFPA
           +  +  +   K   F  K+P R                                 +  ++ G F+IG DMLR+ END+QIS S HL G A  A
Subjt:  SCHLTRIQNSKQHKDSQFTMKNPERV--------------------------------LDGLITGSFMIGMDMLRLPENDNQISRSIHLWGTAFPA

XP_004137444.1 RHOMBOID-like protein 12, mitochondrial [Cucumis sativus]8.2e-1146.88Show/hide
Query:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG
        +L R H  + L  SF T  +  DHSRSWSSH SFA+KI+GF SVP  GKRFI N SNT F+ S++               +++ +LK  F HQWGG
Subjt:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG

XP_008452017.1 PREDICTED: RHOMBOID-like protein 12, mitochondrial [Cucumis melo]8.2e-1127.42Show/hide
Query:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG----
        +L R H  + L  SF T  L  DHSRSWSSH SF +KI+GF SVP  GKR + N SNT F+ S++               +++ +LK  F HQWGG    
Subjt:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG----

Query:  --SLQTKN--------NCCVDYYWKWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSC--------------------
           L  K+        N  V   W+  + I     +     +          +   SHI +  L+      Y                            
Subjt:  --SLQTKN--------NCCVDYYWKWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSC--------------------

Query:  -----HLTRIQNSKQHKDSQFTMKNPERV--------------------------------LDGLITGSFMIGMDMLRLPENDNQISRSIHLWGTAFPA
             HL +  +SK      F  K+P R                                 +  ++ G F+IG DMLR+ END+QIS S HL G A  A
Subjt:  -----HLTRIQNSKQHKDSQFTMKNPERV--------------------------------LDGLITGSFMIGMDMLRLPENDNQISRSIHLWGTAFPA

XP_038893963.1 RHOMBOID-like protein 12, mitochondrial [Benincasa hispida]4.1e-1042.97Show/hide
Query:  MNRLFSLSRIHASRLSNSFP----------------------------TPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---
        MN+LF  SR  ASRLSNSF                             T  L  D SRSWSSH SFAEKI+GF SV   GKRFI N SNTLF+ S++   
Subjt:  MNRLFSLSRIHASRLSNSFP----------------------------TPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---

Query:  ------------QIRSELKLAFDHQWGG
                    ++R +LK  FD QWGG
Subjt:  ------------QIRSELKLAFDHQWGG

TrEMBL top hitse value%identityAlignment
A0A0A0LTI7 Rhomboid domain-containing protein4.0e-1146.88Show/hide
Query:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG
        +L R H  + L  SF T  +  DHSRSWSSH SFA+KI+GF SVP  GKRFI N SNT F+ S++               +++ +LK  F HQWGG
Subjt:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG

A0A0A0LVM8 Uncharacterized protein2.8e-13497.87Show/hide
Query:  MNRLFSLSRIHASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWK
        MNRLFSLSRI ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWK
Subjt:  MNRLFSLSRIHASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWK

Query:  WHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRIQNSKQHKDSQFTMKNPERVLDGLITGSFMIGMDMLRLPEN
        WHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTR+QNSKQHKDSQFTMKNPERVLDGLITGSF+IG+DMLRLPEN
Subjt:  WHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRIQNSKQHKDSQFTMKNPERVLDGLITGSFMIGMDMLRLPEN

Query:  DNQISRSIHLWGTAFPASIHALSEYQKNFRTRNYV
        DNQISRSIHLWGTAFPASIHALSEYQKNF TRNYV
Subjt:  DNQISRSIHLWGTAFPASIHALSEYQKNFRTRNYV

A0A1S3BSX2 RHOMBOID-like protein 12, mitochondrial4.0e-1127.42Show/hide
Query:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG----
        +L R H  + L  SF T  L  DHSRSWSSH SF +KI+GF SVP  GKR + N SNT F+ S++               +++ +LK  F HQWGG    
Subjt:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG----

Query:  --SLQTKN--------NCCVDYYWKWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSC--------------------
           L  K+        N  V   W+  + I     +     +          +   SHI +  L+      Y                            
Subjt:  --SLQTKN--------NCCVDYYWKWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSC--------------------

Query:  -----HLTRIQNSKQHKDSQFTMKNPERV--------------------------------LDGLITGSFMIGMDMLRLPENDNQISRSIHLWGTAFPA
             HL +  +SK      F  K+P R                                 +  ++ G F+IG DMLR+ END+QIS S HL G A  A
Subjt:  -----HLTRIQNSKQHKDSQFTMKNPERV--------------------------------LDGLITGSFMIGMDMLRLPENDNQISRSIHLWGTAFPA

A0A5D3BLA0 RHOMBOID-like protein 123.0e-1126.69Show/hide
Query:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG----
        +L R H  + L  SF T  L  DHSRSWSSH SF +KI+GF SVP  GKR + N SNT F+ S++               +++ +LK  F HQWGG    
Subjt:  SLSRIH-ASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE---------------QIRSELKLAFDHQWGG----

Query:  --SLQTKN--------NCCVDYYW----------------------KWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTC
           L  K+        N  V   W                      + H  I    + +D     +  +    +      +     L K      I  + 
Subjt:  --SLQTKN--------NCCVDYYW----------------------KWHEEIVKLLTWLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTC

Query:  SCHLTRIQNSKQHKDSQFTMKNPERV--------------------------------LDGLITGSFMIGMDMLRLPENDNQISRSIHLWGTAFPA
           +  +  +   K   F  K+P R                                 +  ++ G F+IG DMLR+ END+QIS S HL G A  A
Subjt:  SCHLTRIQNSKQHKDSQFTMKNPERV--------------------------------LDGLITGSFMIGMDMLRLPENDNQISRSIHLWGTAFPA

A0A6J1E6X7 RHOMBOID-like protein 12, mitochondrial2.0e-1050.68Show/hide
Query:  DHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE--------------QIRSELKLAFDHQWGG
        DHSRSWSSH SF EKI+GF S P  GKRFI N SNTLF+ S++              +++ +LK  FDH+W G
Subjt:  DHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLE--------------QIRSELKLAFDHQWGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGGCTCTTTTCTCTTTCTCGCATCCATGCATCAAGGCTTTCGAATTCCTTTCCCACTCCAACTCTCGACATTGATCACTCCCGTTCATGGAGTTCTCATCCAAG
TTTTGCCGAGAAAATTTATGGGTTTCTCTCAGTTCCGGCGGCCGGAAAGCGATTCATCTTCAATACTTCAAATACCCTTTTCCGGAAGAGTCTAGAACAAATTAGGTCTG
AGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGTTTGCAAACGAAGAACAATTGTTGTGTTGATTACTACTGGAAATGGCATGAGGAAATTGTGAAACTTCTAACT
TGGTTAGATCAGTTCAGCCACTTTAATTTCTTTGTGCCCAGGTGTGAGTGGAGCCGTAAATGCTCTCATATTGCTTCATATATTCTTCTTCCCAAATTCGACGCTCAGTA
TCAAATTCTTCAGACCTGTTCTTGCCATCTTACTCGTATCCAGAACTCTAAACAGCATAAAGATTCACAGTTTACTATGAAAAATCCTGAAAGAGTTCTTGATGGTCTCA
TTACGGGCAGTTTTATGATTGGAATGGACATGTTGAGGCTACCAGAGAATGACAACCAAATTTCAAGATCCATCCACCTGTGGGGTACTGCATTTCCAGCCTCAATCCAT
GCCCTTTCTGAATATCAGAAGAACTTCCGTACTCGAAACTATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAGGCTCTTTTCTCTTTCTCGCATCCATGCATCAAGGCTTTCGAATTCCTTTCCCACTCCAACTCTCGACATTGATCACTCCCGTTCATGGAGTTCTCATCCAAG
TTTTGCCGAGAAAATTTATGGGTTTCTCTCAGTTCCGGCGGCCGGAAAGCGATTCATCTTCAATACTTCAAATACCCTTTTCCGGAAGAGTCTAGAACAAATTAGGTCTG
AGTTGAAACTAGCTTTTGATCATCAATGGGGAGGCAGTTTGCAAACGAAGAACAATTGTTGTGTTGATTACTACTGGAAATGGCATGAGGAAATTGTGAAACTTCTAACT
TGGTTAGATCAGTTCAGCCACTTTAATTTCTTTGTGCCCAGGTGTGAGTGGAGCCGTAAATGCTCTCATATTGCTTCATATATTCTTCTTCCCAAATTCGACGCTCAGTA
TCAAATTCTTCAGACCTGTTCTTGCCATCTTACTCGTATCCAGAACTCTAAACAGCATAAAGATTCACAGTTTACTATGAAAAATCCTGAAAGAGTTCTTGATGGTCTCA
TTACGGGCAGTTTTATGATTGGAATGGACATGTTGAGGCTACCAGAGAATGACAACCAAATTTCAAGATCCATCCACCTGTGGGGTACTGCATTTCCAGCCTCAATCCAT
GCCCTTTCTGAATATCAGAAGAACTTCCGTACTCGAAACTATGTTTGATGCAATAATGCTCGCCAACTTCTTTCTCAACCTCTCACTCTTACGTTTAATACATTTACATT
TCATAACATACCTGCTTTGTTGATTTAACACTATGATATAGTTAGTCACTATATGTCACACTGACTGCCTAATAGCAGTCCACTAAGGGACAATTTGGCAGATCTCTTTA
TTCA
Protein sequenceShow/hide protein sequence
MNRLFSLSRIHASRLSNSFPTPTLDIDHSRSWSSHPSFAEKIYGFLSVPAAGKRFIFNTSNTLFRKSLEQIRSELKLAFDHQWGGSLQTKNNCCVDYYWKWHEEIVKLLT
WLDQFSHFNFFVPRCEWSRKCSHIASYILLPKFDAQYQILQTCSCHLTRIQNSKQHKDSQFTMKNPERVLDGLITGSFMIGMDMLRLPENDNQISRSIHLWGTAFPASIH
ALSEYQKNFRTRNYV