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CSPI01G07480 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G07480
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRING-type domain-containing protein
Genome locationChr1:4748739..4750312
RNA-Seq ExpressionCSPI01G07480
SyntenyCSPI01G07480
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN64205.1 hypothetical protein Csa_014029 [Cucumis sativus]9.2e-12198.21Show/hide
Query:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA
        METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHED+AVDLLLDFITNEHTSNGALAIDMNLVHWAIN LR ADAVVDVTNSVSSTQQNA
Subjt:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA

Query:  YLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFH
        YLESDILETREGVVDVT SNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFH
Subjt:  YLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFH

Query:  THCIISWLELCNSCPLCRYQLPT
        THCIISWLELCNSCPLCRYQLPT
Subjt:  THCIISWLELCNSCPLCRYQLPT

TYJ99062.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.2e-4757.43Show/hide
Query:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA
        ME QQ  TL+ NT+RKIE RGMNRLLEEEAVDEI+SFASDFPSHEDEAVDLLLD                                            +A
Subjt:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA

Query:  YLESDILETREGVVDVTGSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHI
          ESDILETRE +VD+T SN  DLLD DD ++WM HVRQLSL+DL  H  FPF ASKS IQALPDVF   DFSSSW C VC++DEI+A DGAKQLP   I
Subjt:  YLESDILETREGVVDVTGSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHI

Query:  FH
         H
Subjt:  FH

XP_008446033.1 PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo]2.5e-8172Show/hide
Query:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA
        ME QQ  TL+ NT+RKIE RGMNRLLEEEAVDEI+SFASDFPSHEDEAVDLLLD IT E TSN A  IDM+LVHWA+  LR A+       S  ST Q+A
Subjt:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA

Query:  YLESDILETREGVVDVTGSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHI
          ESDILETRE +VD+T SN  DLLD DD ++WM HVRQLSL+DL  H  FPF ASKS IQALPDVF   DFSSSW C VC++DEI+A DGAKQLPC+HI
Subjt:  YLESDILETREGVVDVTGSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHI

Query:  FHTHCIISWLELCNSCPLCRYQLPT
        FHTHCIISWLEL NSCPLCRY+LPT
Subjt:  FHTHCIISWLELCNSCPLCRYQLPT

XP_038894000.1 E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]2.8e-1652.75Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        ++QL+ ND + +   P  ASKS I+ALPD+  +++   S S  C VC  D  E N+ AKQ+PCKHI+H  CII WLEL NSCP+CRY+LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

XP_042965583.1 E3 ubiquitin-protein ligase RING1-like [Carya illinoinensis]9.5e-1750.55Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        ++QL+ ND + +   P  ASKS +QALP++  ++D   S SW C VC  D  E  + AKQ+PCKHI+H+ CI+ WLEL NSCP+CR++LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

TrEMBL top hitse value%identityAlignment
A0A0A0LQL0 RING-type domain-containing protein4.5e-12198.21Show/hide
Query:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA
        METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHED+AVDLLLDFITNEHTSNGALAIDMNLVHWAIN LR ADAVVDVTNSVSSTQQNA
Subjt:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA

Query:  YLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFH
        YLESDILETREGVVDVT SNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFH
Subjt:  YLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFH

Query:  THCIISWLELCNSCPLCRYQLPT
        THCIISWLELCNSCPLCRYQLPT
Subjt:  THCIISWLELCNSCPLCRYQLPT

A0A1S3BES6 ERAD-associated E3 ubiquitin-protein ligase HRD1-like1.2e-8172Show/hide
Query:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA
        ME QQ  TL+ NT+RKIE RGMNRLLEEEAVDEI+SFASDFPSHEDEAVDLLLD IT E TSN A  IDM+LVHWA+  LR A+       S  ST Q+A
Subjt:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA

Query:  YLESDILETREGVVDVTGSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHI
          ESDILETRE +VD+T SN  DLLD DD ++WM HVRQLSL+DL  H  FPF ASKS IQALPDVF   DFSSSW C VC++DEI+A DGAKQLPC+HI
Subjt:  YLESDILETREGVVDVTGSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHI

Query:  FHTHCIISWLELCNSCPLCRYQLPT
        FHTHCIISWLEL NSCPLCRY+LPT
Subjt:  FHTHCIISWLELCNSCPLCRYQLPT

A0A2I4GZI1 RING-type E3 ubiquitin transferase1.3e-1649.45Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        ++QL+ ND + +   P  ASKS +Q LP++  ++D   S SW C VC  D  E  + AKQ+PCKHI+H+ CI+ WLEL NSCP+CR++LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

A0A5D3BH26 Pentatricopeptide repeat-containing protein2.5e-4757.43Show/hide
Query:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA
        ME QQ  TL+ NT+RKIE RGMNRLLEEEAVDEI+SFASDFPSHEDEAVDLLLD                                            +A
Subjt:  METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNA

Query:  YLESDILETREGVVDVTGSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHI
          ESDILETRE +VD+T SN  DLLD DD ++WM HVRQLSL+DL  H  FPF ASKS IQALPDVF   DFSSSW C VC++DEI+A DGAKQLP   I
Subjt:  YLESDILETREGVVDVTGSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHI

Query:  FH
         H
Subjt:  FH

A0A6A1VMZ8 RING-type E3 ubiquitin transferase1.7e-1649.45Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        ++QL+ ND + +   P  ASKS ++ALP++   K+   S SW C VC  D  E  + AKQ+PCKHI+H+ CI+ WLEL NSCP+CR++LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

SwissProt top hitse value%identityAlignment
P0CH30 E3 ubiquitin-protein ligase RING18.3e-1647.25Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDV-FTAKDFSSSW-VCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        ++QL+ ND + +   P  ASKS I+ALP V  T  + +S +  C VC+ D+ E    AKQ+PCKH++H  C++ WLEL NSCP+CR++LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDV-FTAKDFSSSW-VCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

Q6AVN2 E3 ubiquitin-protein ligase SIRP11.2e-1436.23Show/hide
Query:  VSSTQQNAYLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLH--EGFPFR-----ASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIE
        +++  Q   L+  +L+  EG  D  GS      +D+ +   +V    L+ L  H  E  P R     A K  ++ALP V   +  S    C VCL D++E
Subjt:  VSSTQQNAYLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLH--EGFPFR-----ASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIE

Query:  ANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
            AKQ+PC+H FH+ CI+ WLEL +SCP+CR++LP+
Subjt:  ANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

Q6GPV5 E3 ubiquitin-protein ligase RNF1813.9e-1346.67Show/hide
Query:  PFRASKSTIQALPDV-FTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        P  ASK  +++LP V  T +   ++  C VCL  E E  +  +QLPC+H+FH+ CI+ WL   NSCPLCR++LPT
Subjt:  PFRASKSTIQALPDV-FTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

Q7ZW78 E3 ubiquitin-protein ligase RNF1817.8e-1436.3Show/hide
Query:  TNSVSSTQQNAYLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV-CGVCLNDEIEAND
        TN     +QNA LE       +G+   +GS DL D D                    +  P  A+K+ +Q+LP V  + + +   V C VCL  E E  +
Subjt:  TNSVSSTQQNAYLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV-CGVCLNDEIEAND

Query:  GAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
          +++PCKH+FHT CI+ WL   NSCPLCR +LPT
Subjt:  GAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

Q8LPN7 E3 ubiquitin-protein ligase RING1-like1.2e-1749.45Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E     KQ+PCKH+FH  C++ WLEL NSCP+CR++LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

Arabidopsis top hitse value%identityAlignment
AT3G13430.1 RING/U-box superfamily protein5.5e-1546.07Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        +++L+ NDL+   G P  A+K  ++AL  V   K   S   C VCL D+ E    AK++PCKH FH+ C++ WLEL +SCP+CRY LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

AT3G13430.2 RING/U-box superfamily protein5.5e-1546.07Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        +++L+ NDL+   G P  A+K  ++AL  V   K   S   C VCL D+ E    AK++PCKH FH+ C++ WLEL +SCP+CRY LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

AT3G13430.3 RING/U-box superfamily protein5.5e-1546.07Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        +++L+ NDL+   G P  A+K  ++AL  V   K   S   C VCL D+ E    AK++PCKH FH+ C++ WLEL +SCP+CRY LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

AT3G19950.1 RING/U-box superfamily protein8.3e-1949.45Show/hide
Query:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E     KQ+PCKH+FH  C++ WLEL NSCP+CR++LPT
Subjt:  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

AT5G15820.1 RING/U-box superfamily protein1.9e-1535.21Show/hide
Query:  DAVVDVTNSVSSTQQNAYLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDV-FTAKDFSS-SWVCGVCLN
        + V++   S+ S      L  ++  +    +DV    D +D      + A + Q+  N+  + +G P  ASKS +  LPDV  T ++ SS S VC +C  
Subjt:  DAVVDVTNSVSSTQQNAYLESDILETREGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDV-FTAKDFSS-SWVCGVCLN

Query:  DEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
        DE+   +  K+LPCKH +H  CII WL + N+CP+CR++LPT
Subjt:  DEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACACAGCAAAGAACAACGTTGAAAAACAACACAGAGAGGAAAATAGAGAGGAGAGGAATGAACAGACTATTGGAAGAAGAAGCAGTTGATGAGATTATTTCATT
TGCCTCCGACTTCCCTTCCCATGAGGATGAAGCCGTAGATCTTCTCCTGGATTTCATCACAAACGAGCATACATCAAATGGAGCTCTAGCAATAGATATGAATTTAGTTC
ATTGGGCAATTAACCGTTTACGTGTTGCCGATGCTGTCGTCGATGTTACCAATAGTGTCAGTTCAACACAACAAAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGG
GAAGGTGTAGTAGACGTTACTGGTTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGA
AGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGA
TTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGTCCACTTTGTCGATACCAA
TTGCCCACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAACACAGCAAAGAACAACGTTGAAAAACAACACAGAGAGGAAAATAGAGAGGAGAGGAATGAACAGACTATTGGAAGAAGAAGCAGTTGATGAGATTATTTCATT
TGCCTCCGACTTCCCTTCCCATGAGGATGAAGCCGTAGATCTTCTCCTGGATTTCATCACAAACGAGCATACATCAAATGGAGCTCTAGCAATAGATATGAATTTAGTTC
ATTGGGCAATTAACCGTTTACGTGTTGCCGATGCTGTCGTCGATGTTACCAATAGTGTCAGTTCAACACAACAAAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGG
GAAGGTGTAGTAGACGTTACTGGTTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGA
AGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGA
TTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGTCCACTTTGTCGATACCAA
TTGCCCACATAG
Protein sequenceShow/hide protein sequence
METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDEAVDLLLDFITNEHTSNGALAIDMNLVHWAINRLRVADAVVDVTNSVSSTQQNAYLESDILETR
EGVVDVTGSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQ
LPT