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CSPI01G07650 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G07650
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCoiled-coil domain-containing protein 12
Genome locationChr1:4857158..4860204
RNA-Seq ExpressionCSPI01G07650
SyntenyCSPI01G07650
Gene Ontology termsGO:0005684 - U2-type spliceosomal complex (cellular component)
GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domainsIPR013169 - mRNA splicing factor Cwf18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584286.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]1.5e-6690.2Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
        MATE+DSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGATED +ETNL+MKFRNYVPHDKELQEGKL PPVLPKFEDPV +EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+N  E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

XP_004137537.1 coiled-coil domain-containing protein 12 [Cucumis sativus]3.4e-74100Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
        MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

XP_008437152.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]2.8e-6893.46Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
        MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

XP_023520254.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]6.4e-6588.46Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGAT---EDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDP
        MATE+DSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGAT   ED +ETNL+MKFRNYVPHDKELQEGKL PPVLPKFEDPV +EPPQLKEDP
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGAT---EDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+N  E
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

XP_038894163.1 coiled-coil domain-containing protein 12 [Benincasa hispida]1.6e-6892.81Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
        MATEEDSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGAT D++ETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EP QLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

TrEMBL top hitse value%identityAlignment
A0A0A0LR08 Uncharacterized protein1.6e-74100Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
        MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

A0A1S3ATB1 coiled-coil domain-containing protein 121.4e-6893.46Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
        MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

A0A5D3BJ95 Coiled-coil domain-containing protein 121.4e-6893.46Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
        MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

A0A6J1DLK0 coiled-coil domain-containing protein 12 isoform X12.0e-6486.93Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
        MATEEDSVEQVAAARKERL+ALRAAQELLN  DEK SGGEDK+NG  ED++ETNL+MKFRNYVPHDKELQEGKLAPPVLPKFEDPV +EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLM+EQEKQK++AEGD+ +NG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X12.6e-6486.93Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERL+ALR AQELLN  DEK SGGED+ENG   D++ETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV +EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+NG E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

SwissProt top hitse value%identityAlignment
Q8R344 Coiled-coil domain-containing protein 128.6e-1238.03Show/hide
Query:  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDET--NLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFV
        +E+ A  RKERLKALR   E     D ++  GE +     E+ +E   +  ++ RNYVP D++L+  ++  A PV    K ++ + +  P+  ++E    
Subjt:  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDET--NLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQ
        N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQ

Q8WUD4 Coiled-coil domain-containing protein 121.3e-1237.14Show/hide
Query:  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFVNI
        +E+ A  RKERLKALR   E     D+++   + K     E+  E +  ++ RNYVP D++L++ ++  A PV    K ++ + +  P+  ++E    N+
Subjt:  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFVNI

Query:  APKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQ
        AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++
Subjt:  APKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQ

Q9UU80 Pre-mRNA-splicing factor cwf183.9e-0428.47Show/hide
Query:  SVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLN-MKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQ-------------
        S+++VA +RK+RL  LR  ++L N                T DS E   N ++ RNY P  +  + G + PP + +  + ++ E  +             
Subjt:  SVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLN-MKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQ-------------

Query:  LKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL
        ++E   V + PKKP WDL RD+++++  LE + Q A+
Subjt:  LKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL

Arabidopsis top hitse value%identityAlignment
AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).2.3e-4467.33Show/hide
Query:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPF
        MA+E++S+EQ AAARKE LKALRAAQEL           E KE+G  E  +E    MKFRNYVP  KELQ+GKLAPP LPKFEDP+ + PP  + KEDPF
Subjt:  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPF

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDND
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA+ KLMEEQEK+++ AE D +
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTC
TGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGC
TTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTT
AGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAA
TGACGAAAATGGTGCAGAGTGA
mRNA sequenceShow/hide mRNA sequence
TCTTGATGGGCCTCTTACGATCCGGGCCTTATATATATATCTCATTCCAAAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTAACG
CCATTGCTCGAAGCTTCCTGTCTACTTTGTCTGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGA
AAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAAT
ATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACT
AAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTAT
TCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGATAGTTTCCCACACAATTTATATGCTCTCTGATGTTA
CAGTCACGGTAATATTCACGACTATATCGACATGCTTGGAGAAAATTGTCCTTAAAGGACAATGGCGTTTCTGGCTTGTAGGGTCAATTTTTCTGTGAGCTTTCTGATCA
TTCTTAGTTGCAAAACTTTACATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTCCTTGACCATTACATCCAATAGAATATCTCATACTGCATAGTGATTTGTAAT
TTACCTAAACTAAAATTAACTTTGTATTTCACTTTATCTTCTACGTTGTTTTTCTTCTTCATTTTATAATCTATTAGACACAC
Protein sequenceShow/hide protein sequence
MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDL
RRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE