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CSPI01G07750 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G07750
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationChr1:4910739..4911122
RNA-Seq ExpressionCSPI01G07750
SyntenyCSPI01G07750
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063492.1 30S ribosomal protein S12-B [Cucumis melo var. makuwa]9.6e-2992.31Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG
        MEEGRRFSNEEKDPMTSKEL EEPYEV+ISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY  G
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG

KAE8652569.1 hypothetical protein Csa_014304 [Cucumis sativus]1.2e-3198.7Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTC
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISR VLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTC
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTC

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]3.3e-2985.23Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        MEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.1e-2791.03Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPK  NSALRKVA+VRLTS FEI AY  G
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]8.7e-3093.59Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLS+NFSTITPKKPNSALRKVA+VRLTS FEITAY  G
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG

TrEMBL top hitse value%identityAlignment
A0A0A0LR16 30S ribosomal protein S12-B1.9e-3097.37Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYT
        MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAYT
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYT

A0A443Q5G0 30S ribosomal protein S12, chloroplastic6.9e-2578.41Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        +EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY  G    ++ HS+
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

A0A5A7V5H8 30S ribosomal protein S12-B4.6e-2992.31Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG
        MEEGRRFSNEEKDPMTSKEL EEPYEV+ISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY  G
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG

A0A6A5N1Q8 Uncharacterized protein1.8e-2585.9Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG
        +EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY  G
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG

A0A6J1F0L1 uncharacterized protein LOC1114383941.6e-2985.23Show/hide
Query:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        MEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Subjt:  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic6.9e-1473.68Show/hide
Query:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        T + SGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY  G    ++ HS+
Subjt:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

A4GYT5 30S ribosomal protein S12-A, chloroplastic3.7e-0770.73Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        TITPKKPNSALRKVA+VRLTS FEITAY  G    ++ HS+
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

A4QJX7 30S ribosomal protein S12-B, chloroplastic9.7e-0862Show/hide
Query:  KGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        +G  +  +STITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Subjt:  KGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

P52762 30S ribosomal protein S12, chloroplastic9.7e-0873.17Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        TITPKKPNSALRKVA+VRLTS FEITAY  G D   + HS+
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

Q85X49 30S ribosomal protein S12, chloroplastic9.7e-0873.17Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        TITPKKPNSALRKVA+VRLTS FEITAY  G D   + HS+
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein7.9e-0540.91Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCGD-EKTESHS
        EE      +R +     K  +    ST TPKKPNSA RK+AKVRL++R +I A+  G+   ++ HS
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCGD-EKTESHS

ATCG00065.1 ribosomal protein S12A4.5e-0870.73Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        TITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

ATCG00905.1 ribosomal protein S12C4.5e-0870.73Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        TITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

ATCG01230.1 ribosomal protein S12B4.5e-0870.73Show/hide
Query:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL
        TITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Subjt:  TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL

ATMG00980.1 Ribosomal protein S12/S23 family protein7.9e-0540.91Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCGD-EKTESHS
        EE      +R +     K  +    ST TPKKPNSA RK+AKVRL++R +I A+  G+   ++ HS
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCGD-EKTESHS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGG
CAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAAAGTACGCTTAACCTCAAGATTTGAAATCACTG
CTTATACGTGCGGTGACGAAAAGACAGAGTCCCATTCTTTGAAATGA
mRNA sequenceShow/hide mRNA sequence
CACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTA
CGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAAAGTACGCTTAACCTCA
AGATTTGAAATCACTGCTTATACGTGCGGTGACGAAAAGACAGAGTCCCATTCTTTGAAATGA
Protein sequenceShow/hide protein sequence
MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCGDEKTESHSLK