; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G08310 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G08310
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRING-H2 finger protein ATL48
Genome locationChr1:5244730..5246907
RNA-Seq ExpressionCSPI01G08310
SyntenyCSPI01G08310
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152465.1 RING-H2 finger protein ATL48 [Cucumis sativus]5.2e-37100Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

XP_008438139.1 PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo]4.4e-3697.56Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

XP_022954948.1 RING-H2 finger protein ATL48-like [Cucurbita moschata]1.2e-3391.46Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYGENPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

XP_023541211.1 RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]1.2e-3391.46Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYG+NPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

XP_038895243.1 RING-H2 finger protein ATL48-like [Benincasa hispida]4.9e-3593.9Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein2.5e-37100Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

A0A1S3AVM7 RING-H2 finger protein ATL482.1e-3697.56Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

A0A5A7UHA1 RING-H2 finger protein ATL482.1e-3697.56Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like5.8e-3491.46Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYGENPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

A0A6J1K3J5 RING-H2 finger protein ATL48-like1.7e-3391.46Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS
        MSS E NLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTA+YYGENPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B1.5e-0744.29Show/hide
Query:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATV-ALMVGTA
        S+     E F+ K R  NP+VPIG L TA VLT GL  F +GNSQ  +++M  ++  QG T+ A+++G A
Subjt:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial2.6e-0746.55Show/hide
Query:  PLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENP
        PLVP+G LAT G L     + R GN +    +  ARV  QG TVA ++G A YYG++P
Subjt:  PLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENP

Q7X843 RING-H2 finger protein ATL485.3e-3282.5Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GAL TAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGT YYYG+NPW+
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWR

Q9BW72 HIG1 domain family member 2A, mitochondrial1.9e-1058.73Show/hide
Query:  EFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATV-ALMVGTA
        E FV K R  NP+VPIG LATA  LT GL SF RGNSQ  Q++MR R+  QG TV A+++G A
Subjt:  EFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A2.4e-0847.14Show/hide
Query:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGAT-VALMVGTA
        S+     E F+ K R  NP+VPIG L TA  LT GL  F RG S   Q++MR R+  QG T VA+++G A
Subjt:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein3.7e-3382.5Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GAL TAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGT YYYG+NPW+
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCGACGAACCCAATTTGGACGAGTTCTTCGTTGAGAAAAAGCGCGCTAGGAACCCTCTTGTCCCCATCGGTGCACTTGCCACTGCTGGGGTTCTCACTGCTGG
ATTAATAAGCTTTAGACGAGGCAACTCTCAATTGGGGCAGATGTTAATGAGAGCTCGTGTAGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTATTACT
ATGGAGAGAATCCTTGGCGGTCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
GAATAATATGTATAGTTTTTAATTGAAGTAAAAATTATTTTGGAACAAAGTTTAAATCTGTGACTTTATAAATGAAATCAATCTAAACTATTAGGAGTTTTTCTTTAAAA
AGAGAATAGTGATAATGATAATTTAATTTAAGCTTGAACTCTGCCATGACTAAAATGTTGTATGGGCCCCCGACCCGCTGATTCGTGCCCCATTTACATCCACAACTGAA
CGAAGTCGAACTTGTACCAAGACGAAGAAGGCGGCAACGAAGCAACCTCTTCCTTCCTCCAAACCAATTCGTTCTTTTTACTTTGTGGGTCGCTTAGTCTTCTTGTGTTT
TTCTCTGCTTTTGATCTAGATTCAGCTCATCCCTTCTTCAATCAACCAACAATGAGCTCCGACGAACCCAATTTGGACGAGTTCTTCGTTGAGAAAAAGCGCGCTAGGAA
CCCTCTTGTCCCCATCGGTGCACTTGCCACTGCTGGGGTTCTCACTGCTGGATTAATAAGCTTTAGACGAGGCAACTCTCAATTGGGGCAGATGTTAATGAGAGCTCGTG
TAGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTATTACTATGGAGAGAATCCTTGGCGGTCGAGTTAAAACGTCCATGTACTGCTCCTTATGACTTTC
TTTTCACCATCTTGTTTTACATTGCGACATTTCAGTAAACAATGAAAGATTTGTTGTCTTGCTATCTTTCTTTAGGTATAAGCCATAACAATCTTATTCTGTGATTCGGT
AATGATATTTATATATACTCGAAATAATTCTTCAGGGGAAGGAAGTGTAATATGTATTCATTCTTGGGCTTAGGTGTATTGCCTTTAAAGATATTAGTCTTGGTGTATTA
TTGATTTTTTTTTCTTATCTTTTATTTGAAGTTCAACGCGATATGTTGGAGCATTAACATTATAACTGAGAATCATTGGGCCTATTCTCAATGTCTTCATCTTAGTTCGA
TGAGCATCCGTATATTATATTGATATATATATTCCCCTTATGACATATGATGGAGGAGCTTACTCATTCTAATTGTCTTCTTCTCTCCTTTATGTTGGGCATATGACAAA
GTTGTTTGTACTCTGCATTAATAGAGATAAGGGGAAGGGAGAGACAAGTTAGAAGTTAGGCATGTGGATGTTTTATTTCCTTTCTTCAGTTCTTTTTTATTCCACATGGT
TTCTATTTGGCAGCATTGAAGTTGTGGCTGTAGATAAGCAAATTCTACATTTCATTTTCATGTCTAAATCAATAGTTATACTTTATTTTGAAATTTCAACTTGAGATCTG
TCACTGCATTTCCTTTAGATTCAACAAATGGGAATGTCTCAATATGGGGTAGGACCCTGCTTCTCTCCTAATCTTCTCCGCTTTCTCATTAATGTTAAGCTTCCACCTGG
TTACAAATCATTGGGGGTGGAAAGTGCAAATCTTCTTCTCCACATGTTCTCATCTGCCAGTCCTTCGAGCGGTTCTATATGTTTCTCTAATTACTTTCAGCATTGAATGG
AATTTGTCTATGAATTCCAGTCTTCAGATGTATTTGTGCAGATGAAAGAAATATGGTACATGTGCATTGTATAATTAGAAAGTCCTTTATGACTGAACTATAATTTAAAT
ATTCTTGATCAATAAATCTATGTTCTTGCCTACAATATTATAATTGGAATTGTTTTAGTTCCATCCCTTATGAATCTACTAGATG
Protein sequenceShow/hide protein sequence
MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAYYYGENPWRSS