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CSPI01G08410 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G08410
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRING-type domain-containing protein
Genome locationChr1:5277305..5278013
RNA-Seq ExpressionCSPI01G08410
SyntenyCSPI01G08410
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB87866.1 RING-H2 finger protein ATL80 [Morus notabilis]8.7e-0954.32Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGM-KRFSNEDLEKIPCYEY--SNKLEDFEMECNFC
        MEIV+S +LL VGIAVLVVIH+CIVGRA        ++NNNNNN  G  KR S+EDL+ IPC++Y  S + E   ++C  C
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGM-KRFSNEDLEKIPCYEY--SNKLEDFEMECNFC

XP_004152551.1 uncharacterized protein LOC101222125 [Cucumis sativus]1.2e-29100Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSNKLEDFEME
        MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSNKLEDFEME
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSNKLEDFEME

XP_010101192.2 RING-H2 finger protein ATL80 [Morus notabilis]1.3e-0955.42Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGM-KRFSNEDLEKIPCYEY--SNKLEDFEMECNFC
        MVMEIV+S +LL VGIAVLVVIH+CIVGRA        ++NNNNNN  G  KR S+EDL+ IPC++Y  S + E   ++C  C
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGM-KRFSNEDLEKIPCYEY--SNKLEDFEMECNFC

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]1.2e-1059.3Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSN----KLEDFEMECNFC
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N         SN+DLEK+PCYEY +         ++EC  C
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSN----KLEDFEMECNFC

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]1.2e-1059.3Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSN----KLEDFEMECNFC
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N         SN+DLEK+PCYEY +         ++EC  C
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSN----KLEDFEMECNFC

TrEMBL top hitse value%identityAlignment
A0A059A647 RING-type domain-containing protein9.4e-0951.22Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEY--SNKLEDFEMECNFC
        MVMEI++S VLL +GIAVLVVIHVCIVGRA RE G +       N++    + S+EDL+K+PC+EY   +K  D + +C  C
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEY--SNKLEDFEMECNFC

A0A6J1GQW8 RING-H2 finger protein ATL56-like5.9e-1159.3Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSN----KLEDFEMECNFC
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N         SN+DLEK+PCYEY +         ++EC  C
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSN----KLEDFEMECNFC

A0A6J1JUU5 RING-H2 finger protein ATL56-like5.9e-1159.3Show/hide
Query:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSN----KLEDFEMECNFC
        MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N         SN+DLEK+PCYEY +         ++EC  C
Subjt:  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSN----KLEDFEMECNFC

W1P7Q1 RING-type domain-containing protein6.7e-0750.59Show/hide
Query:  VSIIMVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEY-SNKLEDFEMECNFC
        V+ IMVM IV+S +LL VGI VLV+IHVCIVGRALR   I    N N+ NS G+ R   EDL+++PC++Y +   E   ++C  C
Subjt:  VSIIMVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEY-SNKLEDFEMECNFC

W9RES1 RING-H2 finger protein ATL804.2e-0954.32Show/hide
Query:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGM-KRFSNEDLEKIPCYEY--SNKLEDFEMECNFC
        MEIV+S +LL VGIAVLVVIH+CIVGRA        ++NNNNNN  G  KR S+EDL+ IPC++Y  S + E   ++C  C
Subjt:  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGM-KRFSNEDLEKIPCYEY--SNKLEDFEMECNFC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAAAAGCCAGAAGGACACTCATCATCAAATTCTTCTTCTTCTTTTTTTTCTTCTTCTTCTTCTTCCTCTTCATCTCTCTGTCTCTCTGTCTCTATTATTATGGT
TATGGAGATTGTTGTATCAGCTGTTCTGTTAGTGGTTGGAATTGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTGGAGAA
GTGATAATAATAATAATAACAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAGCAACAAACTGGAGGATTTTGAAATG
GAATGCAACTTTTGCTGCTGTTCTTCCCAAAATTTCATTGATTCAATTGAATTGATTTGGTTCATGGTTCTGATTTTGCTGCCAATTGTGGTGGCCGGGCCGGAGGAAGT
CGACGTTCAAAAGAAGCCCCAACGTCTGCAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACAAAAGCCAGAAGGACACTCATCATCAAATTCTTCTTCTTCTTTTTTTTCTTCTTCTTCTTCTTCCTCTTCATCTCTCTGTCTCTCTGTCTCTATTATTATGGT
TATGGAGATTGTTGTATCAGCTGTTCTGTTAGTGGTTGGAATTGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTGGAGAA
GTGATAATAATAATAATAACAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAGCAACAAACTGGAGGATTTTGAAATG
GAATGCAACTTTTGCTGCTGTTCTTCCCAAAATTTCATTGATTCAATTGAATTGATTTGGTTCATGGTTCTGATTTTGCTGCCAATTGTGGTGGCCGGGCCGGAGGAAGT
CGACGTTCAAAAGAAGCCCCAACGTCTGCAG
Protein sequenceShow/hide protein sequence
MRQKPEGHSSSNSSSSFFSSSSSSSSSLCLSVSIIMVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSNKLEDFEM
ECNFCCCSSQNFIDSIELIWFMVLILLPIVVAGPEEVDVQKKPQRLQ