; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G08810 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G08810
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationChr1:5524597..5525372
RNA-Seq ExpressionCSPI01G08810
SyntenyCSPI01G08810
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652596.1 hypothetical protein Csa_014373 [Cucumis sativus]3.0e-5889.71Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKL          
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
            ESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

XP_008438871.1 PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]6.8e-6694.85Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIRSRT++VS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]2.2e-69100Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

XP_023001654.1 uncharacterized protein LOC111495727 [Cucurbita maxima]1.4e-4782.54Show/hide
Query:  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGG
        + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    RRWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREA+ GGG
Subjt:  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGG

Query:  RSQRKRRESCNSLRNLFNRASSRRFN
        R+QRK+RESCNSLRNLFNR +SRRFN
Subjt:  RSQRKRRESCNSLRNLFNRASSRRFN

XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]4.9e-5686.76Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKP+L Q  DD RHLEILKAVAQAWHSHTG+SKPASEFDAHRRNSRP PSRFK+EAIR+R S+VSDRRWDF QSLWDSYEIVTVSKKLEAGLVLD DG
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FRE + GGGRSQRK+RESCNSLRNLF+RASSRRFNY
Subjt:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein1.1e-69100Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

A0A1S3AX17 uncharacterized protein LOC1034838293.3e-6694.85Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIRSRT++VS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

A0A5A7UNW1 Uncharacterized protein3.3e-6694.85Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIRSRT++VS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

A0A6J1E7J5 uncharacterized protein LOC1114313501.2e-4779.26Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    RRWDF QSLWDSYEIV VSKKLE GLVLDGDG
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFN
        FREA+ GGGR+QRK+RESCNSLRNLFNR +SRRFN
Subjt:  FREAESGGGRSQRKRRESCNSLRNLFNRASSRRFN

A0A6J1KNC1 uncharacterized protein LOC1114957276.9e-4882.54Show/hide
Query:  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGG
        + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    RRWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREA+ GGG
Subjt:  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGG

Query:  RSQRKRRESCNSLRNLFNRASSRRFN
        R+QRK+RESCNSLRNLFNR +SRRFN
Subjt:  RSQRKRRESCNSLRNLFNRASSRRFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24700.1 unknown protein3.5e-2043.06Show/hide
Query:  MKKKPDLHQLHDDD-----RHLEILKAVAQAWHSHTGTSK-PASEFDAHRRNS--RPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEA
        M+KK +    ++++     + LE++KA AQAW SH+ TSK    EFDA R+++  +   SRFK EA+ ++    S   W+F QSLWD YEI++VSKKLE 
Subjt:  MKKKPDLHQLHDDD-----RHLEILKAVAQAWHSHTGTSK-PASEFDAHRRNS--RPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEA

Query:  GLVLDGDGFREAESGGGRSQRKR--RESCNSLRNLFNRASSRRF
         L L+   F  +++ G +  +K+  R+S NSLR+LF R+SS+RF
Subjt:  GLVLDGDGFREAESGGGRSQRKR--RESCNSLRNLFNRASSRRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGC
TAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGACTAGTACCGTCAGCGATCGGAGATGGGACTTCG
CACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATGGATTCCGGGAAGCTGAGAGCGGCGGTGGGCGG
AGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGAAGATTCAATTATTAG
mRNA sequenceShow/hide mRNA sequence
ATTGAATTGGTGATCATAAACGAATGATCTAAATTTAGAGAGAAGAAGAAGAGTGAAGAAGAAGAAAGTAGAACAAAAATCCAAATGTAAGGTCCACAGTGTTTAACTGT
AAAAGTACCAAAAATCAAAACCCATCTCTCTCGGAAGAAACCCCCAAATTTGAGGTTGTCATTGAACCTCATCATAAACAATGGCCCCGCCCCCAGTTTCAATTCCTTAA
TCCCCACATACACACACACACGCACACACATTATGAAGAAGAAACCAGACCTTCATCAGCTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCA
TGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGATGCCCATCGCCGGAACTCCAGACCCATGCCGTCTAGGTTCAAGATTGAGGCTATTCGGAGCCGGAC
TAGTACCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCGGGGCTGGTGCTGGACGGGGATG
GATTCCGGGAAGCTGAGAGCGGCGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCCAGAAGATTCAATTAT
TAGGGATTTCAAGTTCGAATTCGAACCGATGAATTGAATTTGAAACTTTGTTCATTATCAATTTTTGAAACCCAGAGGTCTTGTTTTTTTCTTTTTTCTTTTTCTTCTTT
CTTAAG
Protein sequenceShow/hide protein sequence
MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIRSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGR
SQRKRRESCNSLRNLFNRASSRRFNY