; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G09200 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G09200
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description30S ribosomal protein S21
Genome locationChr1:5785600..5787165
RNA-Seq ExpressionCSPI01G09200
SyntenyCSPI01G09200
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21
IPR038380 - Ribosomal protein S21 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055302.1 Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa]1.7e-6671.76Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKGV  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKR-------------------------------------------------RFRRPQSITGEQPDQKTPESKNRD
        KRRRFFENSQAKRKRKAREAAKRNRKR                                                 RFRRPQS T +QPD+KTPESKN+D
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKR-------------------------------------------------RFRRPQSITGEQPDQKTPESKNRD

Query:  EEDDNWDFYQVDLPYS
        EEDDNWDFYQVDLPYS
Subjt:  EEDDNWDFYQVDLPYS

TYJ99226.1 putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa]1.7e-6671.76Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKGV  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKR-------------------------------------------------RFRRPQSITGEQPDQKTPESKNRD
        KRRRFFENSQAKRKRKAREAAKRNRKR                                                 RFRRPQS T +QPD+KTPESKN+D
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKR-------------------------------------------------RFRRPQSITGEQPDQKTPESKNRD

Query:  EEDDNWDFYQVDLPYS
        EEDDNWDFYQVDLPYS
Subjt:  EEDDNWDFYQVDLPYS

XP_004152510.2 30S ribosomal protein S21, chloroplastic [Cucumis sativus]2.4e-81100Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
        KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP

XP_008439325.1 PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo]1.9e-7392.81Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKGV  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS
        KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQS T +QPD+KTPESKN+DEEDDNWDFYQVDLPYS
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS

XP_038894121.1 30S ribosomal protein S21, chloroplastic-like [Benincasa hispida]1.3e-6384.34Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSS+T FFS LSISKSSQIHHNSVSINLQSLP SK  RLFA+RG+V  SSQEPKGV   +  YN+LITVGENESEDQ+VNRFRRQVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY
        KRRRFFENSQAKRKRKAREAAKRNRKR FRRPQS   EQP++KTP+ KNRDEEDDNWDFYQVDLPY
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY

TrEMBL top hitse value%identityAlignment
A0A0A0LWJ6 Uncharacterized protein1.2e-81100Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
        KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP

A0A1S3AZ70 uncharacterized protein LOC1034841459.0e-7492.81Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKGV  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS
        KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQS T +QPD+KTPESKN+DEEDDNWDFYQVDLPYS
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS

A0A5A7UHJ6 Ribosomal_S21 domain-containing protein8.1e-6771.76Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKGV  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKR-------------------------------------------------RFRRPQSITGEQPDQKTPESKNRD
        KRRRFFENSQAKRKRKAREAAKRNRKR                                                 RFRRPQS T +QPD+KTPESKN+D
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKR-------------------------------------------------RFRRPQSITGEQPDQKTPESKNRD

Query:  EEDDNWDFYQVDLPYS
        EEDDNWDFYQVDLPYS
Subjt:  EEDDNWDFYQVDLPYS

A0A5D3BJF5 Putative Ribosomal protein S21 family protein8.1e-6771.76Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKGV  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKR-------------------------------------------------RFRRPQSITGEQPDQKTPESKNRD
        KRRRFFENSQAKRKRKAREAAKRNRKR                                                 RFRRPQS T +QPD+KTPESKN+D
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKR-------------------------------------------------RFRRPQSITGEQPDQKTPESKNRD

Query:  EEDDNWDFYQVDLPYS
        EEDDNWDFYQVDLPYS
Subjt:  EEDDNWDFYQVDLPYS

E5GBW8 Structural constituent of ribosome9.0e-7492.81Show/hide
Query:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC
        MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKGV  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQEC
Subjt:  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQEC

Query:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS
        KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQS T +QPD+KTPESKN+DEEDDNWDFYQVDLPYS
Subjt:  KRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS

SwissProt top hitse value%identityAlignment
P82024 30S ribosomal protein S21, chloroplastic7.0e-1536.81Show/hide
Query:  AATSSITNFFSFLSISKSS---------------QIHHNSVSINLQSLPNSKLTRLFASRGN---VASSSQEPKGVPLRILNYNILITVGENESEDQVVN
        A+TSS+ NF S L  S +S                   NS+SI+ +   N+ + +     G+   V   S            YN+ + V +NE+E++++N
Subjt:  AATSSITNFFSFLSISKSS---------------QIHHNSVSINLQSLPNSKLTRLFASRGN---VASSSQEPKGVPLRILNYNILITVGENESEDQVVN

Query:  RFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEED-DNWDFYQVDLPY
        RFRR+V+RAG++QECKRRR+FEN Q ++KRK REAAKRN +RR R P    G  P ++     ++ E+D DNWD  +   P+
Subjt:  RFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEED-DNWDFYQVDLPY

Q1WU25 30S ribosomal protein S218.5e-0548.21Show/hide
Query:  VGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRF
        V +NES D  + RF+R V + G LQE ++R F+E    KRK+K+  A KR  KRRF
Subjt:  VGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRF

Q2JM43 30S ribosomal protein S218.5e-0548.21Show/hide
Query:  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR
        +T+GENE  +  + RF+RQV +AGIL++ +  R FE +  KRKRKA  A +RNR++
Subjt:  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR

Q7NHA1 30S ribosomal protein S21 26.5e-0548.15Show/hide
Query:  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNR
        + +GENES +  + RF++++ +AGIL E KRR  +E   A+RKRKA  A KR R
Subjt:  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNR

Q8RB59 30S ribosomal protein S215.0e-0549.09Show/hide
Query:  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK
        + VGENES D  + RFRRQ  +AG+L E ++R  +E+   KRK+KA  A KR  K
Subjt:  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK

Arabidopsis top hitse value%identityAlignment
AT3G27160.1 Ribosomal protein S21 family protein3.7e-1936.46Show/hide
Query:  AATSSITNFFSFLSISKS-----------------SQIHHNSVSINLQSL--PNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVV
        AA+ S+T+F SF+S  KS                 SQ   N ++I   ++   +S  + L +   +V   S            YN+ + V +NESE+++V
Subjt:  AATSSITNFFSFLSISKS-----------------SQIHHNSVSINLQSL--PNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVV

Query:  NRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLP
        NRFRR+V+R G++QECKRRR+FEN Q ++KR+ R+AAKRN+KRR +   +    +      +SK +DEE+DNW+    D+P
Subjt:  NRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLP

AT5G63300.1 Ribosomal protein S21 family protein3.9e-1340.78Show/hide
Query:  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRFR-RPQSITGEQPDQKTPESKNRDEEDDNWDF--YQVDL
        YN+ +   + ESE+Q+VN F+R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKRR   +P+ ++  +  +    +   DE+DD+W+     +++
Subjt:  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRFR-RPQSITGEQPDQKTPESKNRDEEDDNWDF--YQVDL

Query:  PYS
        PY+
Subjt:  PYS

AT5G63300.2 Ribosomal protein S21 family protein4.1e-1055Show/hide
Query:  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR
        YN+ +   + ESE+Q+VN F+R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR
Subjt:  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCC
AAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCG
TGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAG
GCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAG
TAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA
mRNA sequenceShow/hide mRNA sequence
CAACCGCTCCGAAGAGGAAGTGCAAGACGGACCACCGGTGAGTCGCCATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCA
TCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACC
TAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAG
GAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGAGG
CCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCC
ATAAAGGTCACTCTGCCTTGAAAGAACGAAACCAATATTCGTAATGGATGAGAAGAATTATTAGATGATTAGTGTATTTTACTTTATATTATTTAGTTTAGTTGGTAATT
TAGAATTAATTAGTTAATTGTCAAAGCTATAAATAGCTACTTTAGGTTGTAATATGAAGCTTTCTAAACACCATTTGGAAAATAGAATTGTTCTTAGAGAACTCTCTTTG
AAATTAACTTCTTTTGTTT
Protein sequenceShow/hide protein sequence
MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQ
AKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP