; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G10480 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G10480
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr1:6598237..6598824
RNA-Seq ExpressionCSPI01G10480
SyntenyCSPI01G10480
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.8e-4142.16Show/hide
Query:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF
        ++G D+P WTLN+NG +TVAS+K A    +Q   +      + NLWK++IP++C FF+WTLL++ +N  + L +R+P    +PSWC++CK  +EDR HLF
Subjt:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF

Query:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG
          CP +  +W+ +   L   +   +   LC  +   K KTKK  I  +  A+ LWNIW  RN RIF G+EK V  +WEDI+A+ G
Subjt:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.6e-4244.9Show/hide
Query:  MKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCK
        +K SLP PLPD G   P W LN+N  F  ASIK      +   TN     +Y  LWK   P++CKFF+WTL+H CIN  D LQ+R+P WT+ P+WC +C 
Subjt:  MKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCK

Query:  AAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNST-ALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG
         ++ED  HLF HCP+S  LW K + +L K    PN   +L +++     KT+K  I  + +A  LW IW  RN RIFK ++K+   +WEDI A TG
Subjt:  AAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNST-ALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.6e-4244.9Show/hide
Query:  MKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCK
        +K SLP PLPD G   P W LN+N  F  ASIK      +   TN     +Y  LWK   P++CKFF+WTL+H CIN  D LQ+R+P WT+ P+WC +C 
Subjt:  MKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCK

Query:  AAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNST-ALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG
         ++ED  HLF HCP+S  LW K + +L K    PN   +L +++     KT+K  I  + +A  LW IW  RN RIFK ++K+   +WEDI A TG
Subjt:  AAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNST-ALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]1.1e-4041.62Show/hide
Query:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF
        ++G D+P WTLN+NG +TVAS+K       Q+  +      + NLWK++IP++C FF+WTLL++ +N  + L +R+P    +PSWC++CK  +EDR HLF
Subjt:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF

Query:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG
          CP +  +W+ +   L   +   +   LC  +   K KTKK  I  +  A+ LWNIW  RN RIF G+EK V  +WEDI+A+ G
Subjt:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]2.1e-9790.81Show/hide
Query:  MKVSLPPLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKA
        MKVSLPPLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIP+RCKFFVWTLLHECIN MD+LQRR+PTW +KPSWCILCKA
Subjt:  MKVSLPPLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKA

Query:  AEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSV
        AEEDRQH FTHCPFST L KKVEVILGK LLFPNST LCKDLFKTKGKTKKQTI Q+LVAATLWNIWN RN  IF+GEEKKVDSV
Subjt:  AEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSV

TrEMBL top hitse value%identityAlignment
A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein2.3e-4142.16Show/hide
Query:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF
        ++G D+P WTLN+NG +TVAS+K A    +Q   +      + NLWK++IP++C FF+WTLL++ +N  + L +R+P    +PSWC++CK  +EDR HLF
Subjt:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF

Query:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG
          CP +  +W+ +   L   +   +   LC  +   K KTKK  I  +  A+ LWNIW  RN RIF G+EK V  +WEDI+A+ G
Subjt:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.2e-4244.9Show/hide
Query:  MKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCK
        +K SLP PLPD G   P W LN+N  F  ASIK      +   TN     +Y  LWK   P++CKFF+WTL+H CIN  D LQ+R+P WT+ P+WC +C 
Subjt:  MKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCK

Query:  AAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNST-ALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG
         ++ED  HLF HCP+S  LW K + +L K    PN   +L +++     KT+K  I  + +A  LW IW  RN RIFK ++K+   +WEDI A TG
Subjt:  AAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNST-ALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.2e-4244.9Show/hide
Query:  MKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCK
        +K SLP PLPD G   P W LN+N  F  ASIK      +   TN     +Y  LWK   P++CKFF+WTL+H CIN  D LQ+R+P WT+ P+WC +C 
Subjt:  MKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCK

Query:  AAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNST-ALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG
         ++ED  HLF HCP+S  LW K + +L K    PN   +L +++     KT+K  I  + +A  LW IW  RN RIFK ++K+   +WEDI A TG
Subjt:  AAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNST-ALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG

A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein5.2e-4141.62Show/hide
Query:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF
        ++G D+P WTLN+NG +TVAS+K       Q+  +      + NLWK++IP++C FF+WTLL++ +N  + L +R+P    +PSWC++CK  +EDR HLF
Subjt:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF

Query:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG
          CP +  +W+ +   L   +   +   LC  +   K KTKK  I  +  A+ LWNIW  RN RIF G+EK V  +WEDI+A+ G
Subjt:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein5.2e-4141.62Show/hide
Query:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF
        ++G D+P WTLN+NG +TVAS+K       Q+  +      + NLWK++IP++C FF+WTLL++ +N  + L +R+P    +PSWC++CK  +EDR HLF
Subjt:  DSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLF

Query:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG
          CP +  +W+ +   L   +   +   LC  +   K KTKK  I  +  A+ LWNIW  RN RIF G+EK V  +WEDI+A+ G
Subjt:  THCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G45063.1 copper ion binding;electron carriers1.3e-0734.04Show/hide
Query:  RVPTWTIK-PSWCILCKAAEEDRQHLFTHCPFSTMLWKKV--EVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRI
        R  +W I+ PS C+LC A +E RQH+F  CPFS  +W        +  P +F +S    +   + K   K   I +    A++++IW  RNIR+
Subjt:  RVPTWTIK-PSWCILCKAAEEDRQHLFTHCPFSTMLWKKV--EVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRI

AT2G02650.1 Ribonuclease H-like superfamily protein2.2e-0722.56Show/hide
Query:  EIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPS-WCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGK----PLLFPNSTALCKDLF
        E+   +WK  +  + K F+W     C+        R+ +  I     C  C   EE   H+  +CP++  +W+   +I+G     P  F ++      L 
Subjt:  EIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPS-WCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGK----PLLFPNSTALCKDLF

Query:  KTKGKTKKQTINQHLVAATLWNIWNGRNIRIFK
        KT+      ++++ L    +W +W  RN+ +F+
Subjt:  KTKGKTKKQTINQHLVAATLWNIWNGRNIRIFK

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.8e-0926.43Show/hide
Query:  WKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIK-PSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQT
        +K+ +P+   F  W +    ++  D LQ     W +  P+ C+LC A ++ R HLF  C FS ++W+         L  P     C +   +  + K   
Subjt:  WKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIK-PSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQT

Query:  INQHLV-AATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAI
        +   L   + ++ IW  RN R+  G  +  +S+ +DIQ I
Subjt:  INQHLV-AATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTCTCCCTCCCTCCCTTGCCTGATTCAGGATTTGACAATCCTCGTTGGACTTTAAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCT
AAACAACCAAGACGAGACCAACGAAGATGATGGGGAAATCTATAACAACTTATGGAAATCTACCATCCCCGAAAGATGCAAATTCTTCGTATGGACTCTCCTACATGAGT
GTATCAATATAATGGATATTCTACAGAGAAGGGTCCCAACGTGGACTATAAAGCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCACC
CATTGCCCCTTCTCAACAATGCTCTGGAAGAAAGTTGAAGTTATTCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGG
TAAAACAAAAAAGCAAACCATCAATCAACACCTGGTGGCTGCTACCCTTTGGAACATTTGGAATGGAAGAAACATAAGGATTTTTAAGGGGGAAGAAAAAAAAGTTGATT
CCGTATGGGAAGACATACAAGCCATAACGGGTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTCTCCCTCCCTCCCTTGCCTGATTCAGGATTTGACAATCCTCGTTGGACTTTAAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCT
AAACAACCAAGACGAGACCAACGAAGATGATGGGGAAATCTATAACAACTTATGGAAATCTACCATCCCCGAAAGATGCAAATTCTTCGTATGGACTCTCCTACATGAGT
GTATCAATATAATGGATATTCTACAGAGAAGGGTCCCAACGTGGACTATAAAGCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCACC
CATTGCCCCTTCTCAACAATGCTCTGGAAGAAAGTTGAAGTTATTCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGG
TAAAACAAAAAAGCAAACCATCAATCAACACCTGGTGGCTGCTACCCTTTGGAACATTTGGAATGGAAGAAACATAAGGATTTTTAAGGGGGAAGAAAAAAAAGTTGATT
CCGTATGGGAAGACATACAAGCCATAACGGGTTTTTAG
Protein sequenceShow/hide protein sequence
MKVSLPPLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFT
HCPFSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEEKKVDSVWEDIQAITGF