; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G10930 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G10930
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionnuclear transport factor 2
Genome locationChr1:6850282..6851600
RNA-Seq ExpressionCSPI01G10930
SyntenyCSPI01G10930
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0044613 - nuclear pore central transport channel (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004153658.1 nuclear transport factor 2B [Cucumis sativus]6.9e-65100Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
        MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS

Query:  QMFHLVPSPEGNLFVQNDIFRLNYG
        QMFHLVPSPEGNLFVQNDIFRLNYG
Subjt:  QMFHLVPSPEGNLFVQNDIFRLNYG

XP_008441397.1 PREDICTED: nuclear transport factor 2 [Cucumis melo]3.0e-6094.35Show/hide
Query:  EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQ
        EE+GDIIGKAFVEHYY LFDNERASLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPFERCRHVVSTIDTQPSSV GSILIFVSGSIEIPEEEHPLR+SQ
Subjt:  EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQ

Query:  MFHLVPSPEGNLFVQNDIFRLNYG
        MFHLVPSP+GNLFVQNDIFRLNYG
Subjt:  MFHLVPSPEGNLFVQNDIFRLNYG

XP_023001318.1 nuclear transport factor 2B [Cucurbita maxima]5.3e-5787.2Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
        MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGVHDISS+LQQLPFERCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFS
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS

Query:  QMFHLVPSPEGNLFVQNDIFRLNYG
        QMFHLVP+ +GNL +QNDIFRLNYG
Subjt:  QMFHLVPSPEGNLFVQNDIFRLNYG

XP_023519037.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]7.6e-5687.2Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
        MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFERCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFS
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS

Query:  QMFHLVPSPEGNLFVQNDIFRLNYG
        QMFHLVP+ +GNL VQNDIFRLNYG
Subjt:  QMFHLVPSPEGNLFVQNDIFRLNYG

XP_038895004.1 nuclear transport factor 2B [Benincasa hispida]6.2e-5891.2Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
        MEEE DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGV DISSKLQQLPFER RH+VSTIDTQPSSV GS LIFVSGS+E+PEEEH LRFS
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS

Query:  QMFHLVPSPEGNLFVQNDIFRLNYG
        QMFHLVPSP+GNLFVQN+IFRLNYG
Subjt:  QMFHLVPSPEGNLFVQNDIFRLNYG

TrEMBL top hitse value%identityAlignment
A0A0A0LUU9 NTF2 domain-containing protein3.3e-65100Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
        MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS

Query:  QMFHLVPSPEGNLFVQNDIFRLNYG
        QMFHLVPSPEGNLFVQNDIFRLNYG
Subjt:  QMFHLVPSPEGNLFVQNDIFRLNYG

A0A1S3B3B7 nuclear transport factor 21.4e-6094.35Show/hide
Query:  EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQ
        EE+GDIIGKAFVEHYY LFDNERASLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPFERCRHVVSTIDTQPSSV GSILIFVSGSIEIPEEEHPLR+SQ
Subjt:  EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQ

Query:  MFHLVPSPEGNLFVQNDIFRLNYG
        MFHLVPSP+GNLFVQNDIFRLNYG
Subjt:  MFHLVPSPEGNLFVQNDIFRLNYG

A0A6J1CEC9 nuclear transport factor 21.0e-5381.6Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
        MEEE +++G+AFVEHYYQLFDNERAS+SSLYQP+SMLTFEGQ+ILGV DISS+LQQLPFERCRHVVST+DTQPS+  GS+LIFVSGS+E+P EEH LRFS
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS

Query:  QMFHLVPSPEGNLFVQNDIFRLNYG
        QMFHLVP+ +G+LFVQNDIFRLNYG
Subjt:  QMFHLVPSPEGNLFVQNDIFRLNYG

A0A6J1F427 nuclear transport factor 2B4.8e-5686.4Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
        MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFERCRHVVST+DTQPS+V GSILIFVSGS+E+P+EEH LRFS
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS

Query:  QMFHLVPSPEGNLFVQNDIFRLNYG
        QMFHLVP+ +GNL VQNDIFRLNYG
Subjt:  QMFHLVPSPEGNLFVQNDIFRLNYG

A0A6J1KQ62 nuclear transport factor 2B2.6e-5787.2Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS
        MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGVHDISS+LQQLPFERCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFS
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFS

Query:  QMFHLVPSPEGNLFVQNDIFRLNYG
        QMFHLVP+ +GNL +QNDIFRLNYG
Subjt:  QMFHLVPSPEGNLFVQNDIFRLNYG

SwissProt top hitse value%identityAlignment
Q10100 Nuclear transport factor 21.2e-2750Show/hide
Query:  FVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEG
        F + YYQ FD++R+ LSSLY+ +SML+FEG Q+ G   I  KL  LPF+R +H +ST+D QP+   GS+++ V+G + + EE+   R+SQ+FHLV +  G
Subjt:  FVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEG

Query:  NLFVQNDIFRLNYG
        N +V ND+FRLNYG
Subjt:  NLFVQNDIFRLNYG

Q96VN3 Nuclear transport factor 22.0e-2749.57Show/hide
Query:  IGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVP
        I + FV  YYQ FD  RA L+ LY+  SMLTFE   I GV  I  KL  LPF++ +H VST+D QPS  HG IL+ V+G++ + EE++P+ ++Q F L+P
Subjt:  IGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVP

Query:  SPEGNLFVQNDIFRLNY
           G+ FV ND+FRL Y
Subjt:  SPEGNLFVQNDIFRLNY

Q9C7F5 Nuclear transport factor 2B3.7e-3757.98Show/hide
Query:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL
        D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H +ST+D QPS     +L+FVSG++++  EEH L+FSQMFHL
Subjt:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL

Query:  VPSPEGNLFVQNDIFRLNY
        +P+P+G+ +V NDIFRLNY
Subjt:  VPSPEGNLFVQNDIFRLNY

Q9FZK4 Nuclear transport factor 2A5.0e-3457.14Show/hide
Query:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL
        D + KAFVEHYY  FD  R  L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H ++T+D QPS   G +L+FVSG++++  E+H L+FSQMFHL
Subjt:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL

Query:  VPSPEGNLFVQNDIFRLNY
        + S +GN +V NDIFRLNY
Subjt:  VPSPEGNLFVQNDIFRLNY

Q9XJ54 Nuclear transport factor 23.1e-3658.2Show/hide
Query:  EGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMF
        + D + KAFVEHYY+ FD  R +L SLYQ  SMLTFEGQQ LG   I+ KL  LPF +C H ++T+D QPS   G +L+FVSGS+    +EHPL+FSQMF
Subjt:  EGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMF

Query:  HLVPSPEGNLFVQNDIFRLNYG
         L+P+  GN +VQND+FRLNYG
Subjt:  HLVPSPEGNLFVQNDIFRLNYG

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like4.8e-3261.11Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVH---GSILIFVSGSIEIPEEEHPL
        +EEE   +  AFV HYY LFDN+R+SLSSLY P S+LTFEGQ I GV +IS+KL+QLPF++C H++ST+D+QPSS+    G IL+FVSGSI++  E+HPL
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVH---GSILIFVSGSIEIPEEEHPL

Query:  RFSQMFHL
        RFSQ++ L
Subjt:  RFSQMFHL

AT1G11570.2 NTF2-like2.3e-4262.5Show/hide
Query:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVH---GSILIFVSGSIEIPEEEHPL
        +EEE   +  AFV HYY LFDN+R+SLSSLY P S+LTFEGQ I GV +IS+KL+QLPF++C H++ST+D+QPSS+    G IL+FVSGSI++  E+HPL
Subjt:  MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVH---GSILIFVSGSIEIPEEEHPL

Query:  RFSQMFHLVPSPEGNLFVQNDIFRLNYG
        RFSQ FHL+P  +G+ FVQN++FRLNYG
Subjt:  RFSQMFHLVPSPEGNLFVQNDIFRLNYG

AT1G27310.1 nuclear transport factor 2A3.5e-3557.14Show/hide
Query:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL
        D + KAFVEHYY  FD  R  L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H ++T+D QPS   G +L+FVSG++++  E+H L+FSQMFHL
Subjt:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL

Query:  VPSPEGNLFVQNDIFRLNY
        + S +GN +V NDIFRLNY
Subjt:  VPSPEGNLFVQNDIFRLNY

AT1G27970.1 nuclear transport factor 2B2.6e-3857.98Show/hide
Query:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL
        D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H +ST+D QPS     +L+FVSG++++  EEH L+FSQMFHL
Subjt:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL

Query:  VPSPEGNLFVQNDIFRLNY
        +P+P+G+ +V NDIFRLNY
Subjt:  VPSPEGNLFVQNDIFRLNY

AT1G27970.2 nuclear transport factor 2B1.2e-3556.52Show/hide
Query:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL
        D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H +ST+D QPS     +L+FVSG++++  EEH L+FSQMFHL
Subjt:  DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHL

Query:  VPSPEGNLFVQNDIF
        +P+P+G+ +V NDIF
Subjt:  VPSPEGNLFVQNDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGAGGGTGATATAATTGGGAAAGCTTTTGTGGAACATTACTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCATCTCTGTATCAGCCTGACTCGATGCT
CACTTTTGAAGGGCAACAAATTTTAGGAGTTCATGATATCTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACATGTGGTTAGCACTATAGACACGCAGCCCT
CCTCCGTCCACGGCTCCATCCTCATCTTCGTCAGCGGTAGCATTGAGATACCTGAAGAAGAACACCCACTCAGATTCAGTCAGATGTTTCACTTAGTACCATCACCAGAA
GGCAACCTTTTCGTTCAGAATGACATATTTCGTCTCAATTATGGTTAG
mRNA sequenceShow/hide mRNA sequence
CATACACAGCGATTTCAATTATTCCCTCTTTTGCTCACTCTCTCAAATGACTCCCCTTTACGCTTCTTCCTCTTCACTACTCAACCACATACCCCAACGCCATATCAGTA
ATTACAAATCTCTCTTCCTACATGCACTTCACATTATAAACAATAAACCAACATTATTATTGTATAATCACTAGCTAGTAGAAGCAAAAGGGTTTGTATTGTTGGTTTTG
TTAAAGAGAATTAGAGGGAATGGAAGAAGAGGGTGATATAATTGGGAAAGCTTTTGTGGAACATTACTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCATCTCTGT
ATCAGCCTGACTCGATGCTCACTTTTGAAGGGCAACAAATTTTAGGAGTTCATGATATCTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACATGTGGTTAGC
ACTATAGACACGCAGCCCTCCTCCGTCCACGGCTCCATCCTCATCTTCGTCAGCGGTAGCATTGAGATACCTGAAGAAGAACACCCACTCAGATTCAGTCAGATGTTTCA
CTTAGTACCATCACCAGAAGGCAACCTTTTCGTTCAGAATGACATATTTCGTCTCAATTATGGTTAGATGGTTGAGCCCTGAGGGTCCTTTCTCTCTCTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTGTAGTTTGTACCCACACACTACATTTCAACACATAAACGTTGTATTTTCATGGATTTTATTTTATATTTTGCTTCTTATACTATGACTTTATC
AATGATAAAGATTAACAAGCAACTTCCACGACCCAACATTTTAAAATTTTCAATTGAAATTGTAGAAGGACCAAAACAGTTTCATAGTTTAAAATGTGGAAGTACATTTG
AATACCGCTAATTATTAATAATATTTATTGTTGTTTGATTA
Protein sequenceShow/hide protein sequence
MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPE
GNLFVQNDIFRLNYG