CuGenDBv2

Gene ID	CSPI01G11090
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	Chr1:6929892..6930941
RNA-Seq Expression	CSPI01G11090
Synteny	CSPI01G11090
Gene Ontology terms	GO:0016874 - ligase activity (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain IPR021109 - Aspartic peptidase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037097.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

6.3e-36

30.52

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Query:  APTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDG--HRVLSRFIGLQQEG
        A  ++   +E+P+F G D   W+ + ERYF++  + D  +M+ +  +   G AL W+R  Q       SW   +  L  RF      +VL RF+ ++QE 
Subjt:  APTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDG--HRVLSRFIGLQQEG

Query:  SVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIK---------------------------------------
        +V +Y + F+ L A L ++   VV+  FMNGL   IR EVR+   +G+ ++M  A+L E +                                       
Subjt:  SVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIK---------------------------------------

Query:  ------------NNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG
                    NN  + + K KG ++ER V++ +     +N IS+ L   L+L +   G Y V+LGSG  V+G GIC  V +Q+ N    E+F PL++G
Subjt:  ------------NNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG

Query:  EDDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL
          D V+LG  WL  LG   VDWKNL +      + + ++ DPSL
Subjt:  EDDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL

KAA0056890.1 aminoacyl-tRNA ligase [Cucumis melo var. makuwa]

2.1e-169

87.46

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Query:  MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLC
        MENPVEAL+AKLKKVEDEEVHNIP T DNN TTL+HQMALLLN HQQ L QYAPTHRMPNLELPMFDGTDTLMWILKMERYFEV HIDDIA+MM+TILLC
Subjt:  MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLC

Query:  MSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILD
        MSGQALAWFRCFQNWG PPESW EFR SLY RFGD   V S+F+GL+QEGSV EYCSKFE+LGALLPEL H V+EAKFMNGLKTEIR +VRML  + ILD
Subjt:  MSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILD

Query:  IMHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGE
        IMHRARL E KNNVALNSTKRKGTVKERSV+VKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGK VKGDGICRGVLLQIGN+TY EDFFPLQMGE
Subjt:  IMHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGE

Query:  DDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL
        DDEVILGNLWLV LGKMEVDWKNLPMKL+VGKE VTLRKDP L
Subjt:  DDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL

KAE8652678.1 hypothetical protein Csa_013756 [Cucumis sativus]

1.9e-194

99.12

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Query:  MENPVEALEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCM
        MENPVEALEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEV HIDDIAQMMETILLCM
Subjt:  MENPVEALEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCM

Query:  SGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDI
        SGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDI
Subjt:  SGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDI

Query:  MHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGED
        MHRARLAEIKNNVA NSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGED
Subjt:  MHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGED

Query:  DEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL
        DEVILGNLWLVDLGKMEVDWKNL MKLEVGKEIVTLRKDPSL
Subjt:  DEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL

TYK06549.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]

3.7e-36

30.52

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Query:  APTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDG--HRVLSRFIGLQQEG
        A  ++   +E+P+F G D   W+ + ERYF++  + D  +M+ +  +   G AL W+R  Q       SW   +  L  RF      +VL RF+ ++QE 
Subjt:  APTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDG--HRVLSRFIGLQQEG

Query:  SVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIK---------------------------------------
        +V +Y + F+ L A L ++   VV+  FMNGL   IR EVR+   +G+ ++M  A+L E +                                       
Subjt:  SVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIK---------------------------------------

Query:  ------------NNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG
                    NN  + + K KG ++ER V++ +     +N IS+ L   L+L +   G Y V+LGSG  V+G GIC  V +Q+ N    E+F PL++G
Subjt:  ------------NNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG

Query:  EDDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL
          D V+LG  WL  LG   VDWKNL +      + ++++ DPSL
Subjt:  EDDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL

XP_016900762.1 PREDICTED: uncharacterized protein LOC107991016 [Cucumis melo]

1.1e-162

87.54

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Query:  MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLC
        MENPVEAL+AKLKKVEDEEVHNIP T DNN TTL+HQMALLLN HQQ L QYAPTHRMPNLELPMFDGTDTLMWILKMERYFEV HIDDIA+MM+TILLC
Subjt:  MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLC

Query:  MSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILD
        MSGQALAWFRCFQNWG PPESW EFR SLY RFGD   V S+F+GL+QEGSV EYCSKFE+LGALLPEL H V+EAKFMNGLKTEIR +VRML  + ILD
Subjt:  MSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILD

Query:  IMHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGE
        IMHRARL E KNNVALNSTKRKGTVKERSV+VKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGK VKGDGICRGVLLQIGN+TY EDFFPLQMGE
Subjt:  IMHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGE

Query:  DDEVILGNLWLVDLGKMEVDWKNLPMKLE
        DDEVILGNLWLV LGKMEVDWKNLPMKL+
Subjt:  DDEVILGNLWLVDLGKMEVDWKNLPMKLE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LUB3 Retrotrans_gag domain-containing protein

1.4e-126

96.17

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Query:  MENPVEALEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCM
        MENPVEALEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEV HIDDIAQMMETILLCM
Subjt:  MENPVEALEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCM

Query:  SGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDI
        SGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDI
Subjt:  SGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDI

Query:  MHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVS
        MHRARLAEIKNNVA NSTKRKGTVKE S+++ ++S
Subjt:  MHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVS

A0A1S4DXQ7 uncharacterized protein LOC107991016

5.5e-163

87.54

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Query:  MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLC
        MENPVEAL+AKLKKVEDEEVHNIP T DNN TTL+HQMALLLN HQQ L QYAPTHRMPNLELPMFDGTDTLMWILKMERYFEV HIDDIA+MM+TILLC
Subjt:  MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLC

Query:  MSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILD
        MSGQALAWFRCFQNWG PPESW EFR SLY RFGD   V S+F+GL+QEGSV EYCSKFE+LGALLPEL H V+EAKFMNGLKTEIR +VRML  + ILD
Subjt:  MSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILD

Query:  IMHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGE
        IMHRARL E KNNVALNSTKRKGTVKERSV+VKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGK VKGDGICRGVLLQIGN+TY EDFFPLQMGE
Subjt:  IMHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGE

Query:  DDEVILGNLWLVDLGKMEVDWKNLPMKLE
        DDEVILGNLWLV LGKMEVDWKNLPMKL+
Subjt:  DDEVILGNLWLVDLGKMEVDWKNLPMKLE

A0A5A7T6B1 Transposon Ty3-G Gag-Pol polyprotein

3.0e-36

30.52

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Query:  APTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDG--HRVLSRFIGLQQEG
        A  ++   +E+P+F G D   W+ + ERYF++  + D  +M+ +  +   G AL W+R  Q       SW   +  L  RF      +VL RF+ ++QE 
Subjt:  APTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDG--HRVLSRFIGLQQEG

Query:  SVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIK---------------------------------------
        +V +Y + F+ L A L ++   VV+  FMNGL   IR EVR+   +G+ ++M  A+L E +                                       
Subjt:  SVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIK---------------------------------------

Query:  ------------NNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG
                    NN  + + K KG ++ER V++ +     +N IS+ L   L+L +   G Y V+LGSG  V+G GIC  V +Q+ N    E+F PL++G
Subjt:  ------------NNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG

Query:  EDDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL
          D V+LG  WL  LG   VDWKNL +      + + ++ DPSL
Subjt:  EDDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL

A0A5D3BJD9 Aminoacyl-tRNA ligase

1.0e-169

87.46

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Query:  MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLC
        MENPVEAL+AKLKKVEDEEVHNIP T DNN TTL+HQMALLLN HQQ L QYAPTHRMPNLELPMFDGTDTLMWILKMERYFEV HIDDIA+MM+TILLC
Subjt:  MENPVEALEAKLKKVEDEEVHNIPIT-DNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLC

Query:  MSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILD
        MSGQALAWFRCFQNWG PPESW EFR SLY RFGD   V S+F+GL+QEGSV EYCSKFE+LGALLPEL H V+EAKFMNGLKTEIR +VRML  + ILD
Subjt:  MSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILD

Query:  IMHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGE
        IMHRARL E KNNVALNSTKRKGTVKERSV+VKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGK VKGDGICRGVLLQIGN+TY EDFFPLQMGE
Subjt:  IMHRARLAEIKNNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGE

Query:  DDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL
        DDEVILGNLWLV LGKMEVDWKNLPMKL+VGKE VTLRKDP L
Subjt:  DDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL

A0A5D3C860 Transposon Tf2-1 polyprotein isoform X1

1.8e-36

30.52

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Query:  APTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDG--HRVLSRFIGLQQEG
        A  ++   +E+P+F G D   W+ + ERYF++  + D  +M+ +  +   G AL W+R  Q       SW   +  L  RF      +VL RF+ ++QE 
Subjt:  APTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDG--HRVLSRFIGLQQEG

Query:  SVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIK---------------------------------------
        +V +Y + F+ L A L ++   VV+  FMNGL   IR EVR+   +G+ ++M  A+L E +                                       
Subjt:  SVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIK---------------------------------------

Query:  ------------NNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG
                    NN  + + K KG ++ER V++ +     +N IS+ L   L+L +   G Y V+LGSG  V+G GIC  V +Q+ N    E+F PL++G
Subjt:  ------------NNVALNSTKRKGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMG

Query:  EDDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL
          D V+LG  WL  LG   VDWKNL +      + ++++ DPSL
Subjt:  EDDEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTLRKDPSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G29750.1 Eukaryotic aspartyl protease family protein

1.1e-14

27.23

Show/hide

Query:  FIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGI-------------------LDIMHRAR-----LAEIKNN-----
        + G+QQEGSV +Y  +FE+L      L     E  F+ GL+  ++  VR L   GI                   LD++ + +     L E++ +     
Subjt:  FIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGI-------------------LDIMHRAR-----LAEIKNN-----

Query:  -----VALNSTKRKGT-----VKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGEDD-
             + ++ T+ KG      + +  VVV + S    N I   LA  LKL   +    SV+LG  + ++  G C G+ L +      E+F  L + + D 
Subjt:  -----VALNSTKRKGT-----VKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGEDD-

Query:  EVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTL
        +VILG  WL  LG+  V+W+N        ++ +TL
Subjt:  EVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTL

AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding

2.8e-10

25.68

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Query:  ERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRV--LSRFIGLQQEGSVGEYCSKFESL---GALLPELSHCV
        E YF   +I +  + ++ +   + G    W +      N P SW EF+  + +      +V     + G+QQEGSV EY  +FE+L     +LP      
Subjt:  ERYFEVPHIDDIAQMMETILLCMSGQALAWFRCFQNWGNPPESWGEFRGSLYKRFGDGHRV--LSRFIGLQQEGSVGEYCSKFESL---GALLPELSHCV

Query:  VEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVALN------STKRK----GTVKERSVVVKVVSWTDYNLISKNLATD---LKLKLDMYGD
        +EA F+ GL+  ++  VR L   GI+ +M  A+  E  N++ +        T+ K       + RS+V+      D     +    D   LK + ++ G 
Subjt:  VEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVALN------STKRK----GTVKERSVVVKVVSWTDYNLISKNLATD---LKLKLDMYGD

Query:  ----------YSVVLGS--------GKTVKGDGICRGVLLQIGNETYAEDFFPLQMGED-DEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTL
                  Y  +L             VK    C+ + L+I +    ED+    +  D  +VILG  WL  LG+ EV+W+N        ++ VTL
Subjt:  ----------YSVVLGS--------GKTVKGDGICRGVLLQIGNETYAEDFFPLQMGED-DEVILGNLWLVDLGKMEVDWKNLPMKLEVGKEIVTL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAAACCCAGTAGAAGCATTAGAAGCCAAATTGAAGAAGGTTGAGGATGAAGAAGTTCACAACATCCCAATAACTGACAACAACCACACCACCCTCTTACACCAAAT
GGCTCTGCTCCTGAACGCACACCAACAACGCCTACTTCAATATGCACCCACCCACCGGATGCCCAACCTGGAGCTACCCATGTTCGACGGAACAGATACCCTCATGTGGA
TCTTGAAAATGGAGCGATACTTTGAAGTTCCCCACATCGACGACATTGCCCAGATGATGGAGACCATCCTTCTCTGTATGTCTGGCCAAGCCCTTGCCTGGTTCCGGTGC
TTTCAAAACTGGGGAAATCCGCCGGAATCGTGGGGTGAGTTCCGGGGTTCATTGTATAAGAGATTTGGAGACGGTCACAGGGTGCTTTCCAGGTTCATTGGCTTGCAGCA
AGAGGGGAGTGTTGGGGAATATTGTAGCAAGTTCGAGTCACTAGGGGCGCTCCTTCCAGAACTCTCTCACTGTGTTGTTGAAGCTAAATTTATGAACGGCTTGAAGACAG
AGATTCGAGGGGAGGTTCGGATGTTAGATACAGAAGGTATACTGGACATTATGCATAGAGCAAGGTTAGCGGAAATTAAGAACAACGTCGCTTTGAACTCAACCAAGCGT
AAGGGCACGGTCAAGGAGAGGTCTGTGGTTGTTAAGGTCGTCAGTTGGACAGACTATAACTTAATCTCTAAAAACTTAGCTACAGACTTGAAGCTTAAATTGGACATGTA
TGGCGACTACAGTGTGGTTTTAGGTTCCGGAAAGACGGTGAAAGGAGACGGAATTTGCCGTGGAGTGTTGCTGCAGATCGGGAATGAAACCTATGCGGAGGATTTCTTTC
CCCTTCAAATGGGAGAGGATGATGAGGTGATATTGGGAAATCTGTGGCTGGTGGATTTAGGCAAGATGGAAGTTGATTGGAAAAACCTTCCGATGAAGCTGGAGGTGGGG
AAGGAGATTGTTACTTTAAGAAAAGATCCATCTCTCTGA

mRNA sequence

Show/hide mRNA sequence

GGAAATTTGCTAAGAAACAAAATGGAAAACCCAGTAGAAGCATTAGAAGCCAAATTGAAGAAGGTTGAGGATGAAGAAGTTCACAACATCCCAATAACTGACAACAACCA
CACCACCCTCTTACACCAAATGGCTCTGCTCCTGAACGCACACCAACAACGCCTACTTCAATATGCACCCACCCACCGGATGCCCAACCTGGAGCTACCCATGTTCGACG
GAACAGATACCCTCATGTGGATCTTGAAAATGGAGCGATACTTTGAAGTTCCCCACATCGACGACATTGCCCAGATGATGGAGACCATCCTTCTCTGTATGTCTGGCCAA
GCCCTTGCCTGGTTCCGGTGCTTTCAAAACTGGGGAAATCCGCCGGAATCGTGGGGTGAGTTCCGGGGTTCATTGTATAAGAGATTTGGAGACGGTCACAGGGTGCTTTC
CAGGTTCATTGGCTTGCAGCAAGAGGGGAGTGTTGGGGAATATTGTAGCAAGTTCGAGTCACTAGGGGCGCTCCTTCCAGAACTCTCTCACTGTGTTGTTGAAGCTAAAT
TTATGAACGGCTTGAAGACAGAGATTCGAGGGGAGGTTCGGATGTTAGATACAGAAGGTATACTGGACATTATGCATAGAGCAAGGTTAGCGGAAATTAAGAACAACGTC
GCTTTGAACTCAACCAAGCGTAAGGGCACGGTCAAGGAGAGGTCTGTGGTTGTTAAGGTCGTCAGTTGGACAGACTATAACTTAATCTCTAAAAACTTAGCTACAGACTT
GAAGCTTAAATTGGACATGTATGGCGACTACAGTGTGGTTTTAGGTTCCGGAAAGACGGTGAAAGGAGACGGAATTTGCCGTGGAGTGTTGCTGCAGATCGGGAATGAAA
CCTATGCGGAGGATTTCTTTCCCCTTCAAATGGGAGAGGATGATGAGGTGATATTGGGAAATCTGTGGCTGGTGGATTTAGGCAAGATGGAAGTTGATTGGAAAAACCTT
CCGATGAAGCTGGAGGTGGGGAAGGAGATTGTTACTTTAAGAAAAGATCCATCTCTCTGA

Protein sequence

Show/hide protein sequence

MENPVEALEAKLKKVEDEEVHNIPITDNNHTTLLHQMALLLNAHQQRLLQYAPTHRMPNLELPMFDGTDTLMWILKMERYFEVPHIDDIAQMMETILLCMSGQALAWFRC
FQNWGNPPESWGEFRGSLYKRFGDGHRVLSRFIGLQQEGSVGEYCSKFESLGALLPELSHCVVEAKFMNGLKTEIRGEVRMLDTEGILDIMHRARLAEIKNNVALNSTKR
KGTVKERSVVVKVVSWTDYNLISKNLATDLKLKLDMYGDYSVVLGSGKTVKGDGICRGVLLQIGNETYAEDFFPLQMGEDDEVILGNLWLVDLGKMEVDWKNLPMKLEVG
KEIVTLRKDPSL

CSPI01G11090 (gene) of Cucumber (PI 183967) v1 genome