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CSPI01G11270 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G11270
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationChr1:7011749..7012054
RNA-Seq ExpressionCSPI01G11270
SyntenyCSPI01G11270
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045593.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.7e-3477.23Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

KAA0045594.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.7e-3477.23Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

KAA0045610.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.7e-3477.23Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

XP_011652893.2 exopolygalacturonase [Cucumis sativus]1.2e-3579.21Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLTIDHVTI A EN+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

XP_016903689.1 PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]1.7e-3477.23Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A0A0LX75 Uncharacterized protein3.8e-3577.23Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLT DHVTI A EN+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KY+KEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

A0A5A7TR51 Exopolygalacturonase-like8.5e-3577.23Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

A0A5A7TRZ0 Exopolygalacturonase-like8.5e-3577.23Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

A0A5D3BWP4 Exopolygalacturonase-like8.5e-3577.23Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

A0A5D3DYI3 Exopolygalacturonase-like8.5e-3577.23Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)3.8e-2447.52Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +++D+T+LDSKN+H+  +GCKNLT +   I A E ++N DGIH+  S+ +NI+NT I   DDCI + + +K   I+++TCGPGHGI+ GS  +Y  E+ V
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Query:  V
        V
Subjt:  V

P35337 Polygalacturonase2.5e-2047.47Show/hide
Query:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +KD+TSLD+KN+H   +  KN+T D++ IIA   + N DGIH+   E + ILNT I   DDCI V +  K  +I  V CGPGHGI+ GS  +Y  E++V
Subjt:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Q39766 Polygalacturonase3.3e-2045Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +++DITS DSK +HI    CKN+T++ + I A + + N DGIH+  SE +NI+ ++I   DDCI + +  K  VI ++TCGPGHGI+ GS  K+  E+ V
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Q40312 Polygalacturonase3.9e-2145Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +V+ +TS DSKN+H+   GCKN+T D  TI A  ++ N DGIH+  S ++ ILNTNI   DDC+ + + +K+  +  V CGPGHG++ GS  K++ E+ V
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Q6H9K0 Exopolygalacturonase (Fragment)1.0e-2149Show/hide
Query:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        MV+DITSL+SK +HI  L C+++T  HVT+ A   ++N DGIHV  S+ + I NT I   DDCI +   ++   I+ V CGPGHGI+ GS  +Y+ EKEV
Subjt:  MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein2.8e-2246.46Show/hide
Query:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        ++DI+S+D+KN+HI  LG KN+T++++ I+A E++ N DGIH+  S+ + ILN+ I+  DDCI V +  K   +  VTCGPGHGI+ GS  +Y  E++V
Subjt:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

AT3G07830.1 Pectin lyase-like superfamily protein1.5e-2042.42Show/hide
Query:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        ++DI+S+D+KN+HI  +G KN+T D+V I+A   + N DGIH+  S  ++I+N+ I+  DDC+ V +     ++ +V CGPGHGI+ GS  +Y  E++V
Subjt:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

AT3G07840.1 Pectin lyase-like superfamily protein6.2e-2247.47Show/hide
Query:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        ++DI+S+D+KN+HI  LG KN+T D+V +IA   + N DGIH+  SE + ILN+ I   DDCI V +  K   + +V CGPGHGI+ GS  +Y  E++V
Subjt:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

AT3G07850.1 Pectin lyase-like superfamily protein4.2e-1838.38Show/hide
Query:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        +  ITS +SK +H+  L CKN+T+  + I A   +LN DGIH+  S  +N++   I   DDC+ + +  +  ++ +V CGPGHGI+ GS  +Y  E+ V
Subjt:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV

AT5G48140.1 Pectin lyase-like superfamily protein5.3e-2147.47Show/hide
Query:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV
        ++ ITSLD+K++HI  +G KN+T + V IIA   + N DGIHV  S+ I I+N+ I+  DDC+ V +  K  ++  VTCGPGHGI+ GS  +YS E+ V
Subjt:  VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAGGACATAACGTCATTAGATAGCAAGAATTATCATATTAAATTTTTGGGTTGCAAGAATCTTACCATTGACCACGTGACAATTATTGCATTGGAGAATAATCT
CAACATAGATGGAATTCATGTGAGTAGTTCAGAAGAGATTAACATTCTCAATACCAATATCACTATCGAAGATGATTGTATATTTGTGAAAAATACCAACAAACGAACAG
TTATTAGTGATGTTACTTGCGGACCGGGTCATGGAATTAACACAGGAAGTTGGGAAAAATATAGCAAGGAAAAAGAAGTGGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAGGACATAACGTCATTAGATAGCAAGAATTATCATATTAAATTTTTGGGTTGCAAGAATCTTACCATTGACCACGTGACAATTATTGCATTGGAGAATAATCT
CAACATAGATGGAATTCATGTGAGTAGTTCAGAAGAGATTAACATTCTCAATACCAATATCACTATCGAAGATGATTGTATATTTGTGAAAAATACCAACAAACGAACAG
TTATTAGTGATGTTACTTGCGGACCGGGTCATGGAATTAACACAGGAAGTTGGGAAAAATATAGCAAGGAAAAAGAAGTGGTATGA
Protein sequenceShow/hide protein sequence
MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIEDDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV