; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G12090 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G12090
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein LOL2
Genome locationChr1:7617566..7620827
RNA-Seq ExpressionCSPI01G12090
SyntenyCSPI01G12090
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]1.1e-6898.5Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        MDVHEIEKDEDDGPPPGWEPITPSLPL PPPPQLSS DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

XP_008442535.1 PREDICTED: protein LOL2 isoform X3 [Cucumis melo]7.8e-6796.24Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        MDVHEIEKDEDDGPPPGWEPITPSLPL PP PQLS ADMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

XP_008442544.1 PREDICTED: protein LOL2 isoform X4 [Cucumis melo]5.6e-6595.49Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        MDVHEIEKDEDDGPPPGWEPITPSLPL PP PQL S DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]1.5e-7099.25Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        MDVHEIEKDEDDGPPPGWEPITPSLPL PPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]6.2e-6490.98Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        M++HEIEKDEDDGPPPGWEPITP  PLP PPPQ  S+DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCT VTEIGVHNRRPPWSV QGQAAPPTN VQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein5.3e-6998.5Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        MDVHEIEKDEDDGPPPGWEPITPSLPL PPPPQLSS DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

A0A1S3B6K2 protein LOL2 isoform X33.8e-6796.24Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        MDVHEIEKDEDDGPPPGWEPITPSLPL PP PQLS ADMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

A0A1S3B6Q2 protein LOL2 isoform X42.7e-6595.49Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        MDVHEIEKDEDDGPPPGWEPITPSLPL PP PQL S DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

A0A5A7UQS3 Protein LOL2 isoform X42.7e-6595.49Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        MDVHEIEKDEDDGPPPGWEPITPSLPL PP PQL S DMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

A0A5D3DST5 Protein LOL2 isoform X33.8e-6796.24Show/hide
Query:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
        MDVHEIEKDEDDGPPPGWEPITPSLPL PP PQLS ADMAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC
Subjt:  MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRC

Query:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ
        SSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL26.3e-3555.56Show/hide
Query:  EIEKDEDDGPPPGWEP-------ITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE        +T +  + P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEP-------ITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVHQG
        VRCSSC SVT+I  +N+RPPWS  QG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVHQG

P94077 Protein LSD17.4e-2044.25Show/hide
Query:  PPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPW
        PPPPP     DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P 
Subjt:  PPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPW

Query:  SVHQ--GQAAPPT
          ++  G A PP+
Subjt:  SVHQ--GQAAPPT

Q0J7V9 Protein LSD15.7e-2057.53Show/hide
Query:  DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        +MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Q704V3 Protein LOL51.3e-2759Show/hide
Query:  SLPL-PPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ
        S+PL PPPP    + ++ QMVCG+CR LL Y +GA YV C+CC T+N+VLEAHEVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R   S+ Q
Subjt:  SLPL-PPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ

Q93ZB1 Protein LOL11.5e-2056.79Show/hide
Query:  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PPP     +MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.1e-2156.79Show/hide
Query:  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PPP     +MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.2 lsd one like 11.1e-2156.79Show/hide
Query:  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PPP     +MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.3 lsd one like 11.1e-2156.79Show/hide
Query:  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PPP     +MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT4G20380.2 LSD1 zinc finger family protein5.3e-2144.25Show/hide
Query:  PPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPW
        PPPPP     DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P 
Subjt:  PPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPW

Query:  SVHQ--GQAAPPT
          ++  G A PP+
Subjt:  SVHQ--GQAAPPT

AT4G21610.1 lsd one like 24.5e-3655.56Show/hide
Query:  EIEKDEDDGPPPGWEP-------ITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
        E E++E++GPPPGWE        +T +  + P P  +   + AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIEKDEDDGPPPGWEP-------ITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVHQG
        VRCSSC SVT+I  +N+RPPWS  QG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVHQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCCTCGCTGCCTCTACCACCGCCGCCACCGCAACTTTCTTCAGC
TGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAG
CTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGG
GTTCATAATAGACGGCCACCGTGGTCTGTTCACCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAATAG
mRNA sequenceShow/hide mRNA sequence
AATTTTTAAGATTTATATTAAATGTTAAAACTAAAATGGCATAAGGGGAGAATTTGAGAAGTTAGGGAGCCAATGCGCGGGACGCCGTTGTCCATGAAAACAGCAACACG
ATCGATTCTTAAGACCACAAATCCAGAGAATGGATGTTCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCCTCGCTGCCTCTA
CCACCGCCGCCACCGCAACTTTCTTCAGCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTG
CTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTT
CCTCGTGTACCAGTGTGACAGAAATTGGGGTTCATAATAGACGGCCACCGTGGTCTGTTCACCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAATAGAATTTGTTT
TTCTGAGTTTCTTTTAGGAAAAGAGGTTTCATTTTCTGAGTTTTTCTTTTCCGTTGCAGCCTTAATCAGCAGGCAGAGAGAAGGAAAAGAGAACACTATCAATCATTACT
ACCTCTTTTGTTTCTTTATTATTAGCTATTGAGTTTATGTAAAGAAACTTAGGAACTCACCTTCCCAACTTCTAACGTTTTTTTTCTTTTTATCTTAAGTTTTTTTGACT
TGTGACTTGACTTCTTGCTTTATGTTCATTTTTTTTTACTGCTGCTGATTGGAGTCTTATTAGTTGCTGCCAATCTCTGAGGTGTACATAATTGTAATTTGTAAATGATA
TGAATCTTTTTTGTTGTCAAATTGTTGAGGTGTAATTTATTGA
Protein sequenceShow/hide protein sequence
MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
VHNRRPPWSVHQGQAAPPTNFVQ