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CSPI01G12480 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G12480
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontranscription factor TCP10-like
Genome locationChr1:7936468..7938528
RNA-Seq ExpressionCSPI01G12480
SyntenyCSPI01G12480
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:2000032 - regulation of secondary shoot formation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583970.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia]7.7e-2278.67Show/hide
Query:  RRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTED
        RRL S+    AG GKVYTSKG RAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWLL NAKSAID LSRPL+TED
Subjt:  RRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTED

XP_008443015.1 PREDICTED: transcription factor TCP10-like [Cucumis melo]2.3e-7486.21Show/hide
Query:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS
        MGSL DHDK  AKI RRNRRL S+  AGAG GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL NAK AIDALSRPLQTEDNDCRKQ 
Subjt:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS

Query:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
        FSLPVP       SSSSSSQFQSYPLQNFSQKGNLSVF PMILN TT  FSGTQPPCPSQSN+GAGFPFFPMWE
Subjt:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE

XP_011653401.1 transcription factor PCF8 [Cucumis sativus]2.3e-9099.43Show/hide
Query:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS
        MGSLHDHDKNT KIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS
Subjt:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS

Query:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
        FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
Subjt:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE

XP_023001760.1 transcription factor PCF8-like [Cucurbita maxima]6.9e-4771.15Show/hide
Query:  RRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSS
        RRL S+    AG GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLL NAKSAIDALSRPL+TED    K+SF    PS +SS  SSSSS
Subjt:  RRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSS

Query:  SQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
        SQF +YPL+NF + GNLSV  PMI+N T  EFSG QPPC SQSN  +G P FPMWE
Subjt:  SQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE

XP_038893685.1 transcription factor TCP10-like [Benincasa hispida]4.0e-5570.35Show/hide
Query:  SLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFS
        SL+D D+ TAK+ RR+RRL S+  AGA  GKVYTS+GLRARR RLSAPTAI+FYD+QDRLG  RPTE +DWLL NAKSAIDALSRPL+T D + RKQ F 
Subjt:  SLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFS

Query:  LPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
         PVP        SSSSSQFQSYPL+NFSQKGNL+VF PMILNAT  EFSG QPP PSQSN+  GF  FP+WE
Subjt:  LPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE

TrEMBL top hitse value%identityAlignment
A0A0A0LUP1 TCP domain-containing protein1.1e-9099.43Show/hide
Query:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS
        MGSLHDHDKNT KIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS
Subjt:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS

Query:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
        FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
Subjt:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE

A0A1S3B7T4 transcription factor TCP10-like1.1e-7486.21Show/hide
Query:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS
        MGSL DHDK  AKI RRNRRL S+  AGAG GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL NAK AIDALSRPLQTEDNDCRKQ 
Subjt:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS

Query:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
        FSLPVP       SSSSSSQFQSYPLQNFSQKGNLSVF PMILN TT  FSGTQPPCPSQSN+GAGFPFFPMWE
Subjt:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE

A0A444EWL7 TCP domain-containing protein9.8e-1543.38Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQS---------
        KV T+KGLR RR+RLSA TAI+FYD+QDRLGC RP++A+DWL+ NAK+AID L+     E   C   +  L  P ++SSS     S+QF S         
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSSSQFQS---------

Query:  -------YPLQNFSQKGN-LSVFCPMILNATTGEFS
                PL N     + +  FCPM+ +AT   F+
Subjt:  -------YPLQNFSQKGN-LSVFCPMILNATTGEFS

A0A5A7UTZ9 Transcription factor TCP10-like1.1e-7486.21Show/hide
Query:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS
        MGSL DHDK  AKI RRNRRL S+  AGAG GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL NAK AIDALSRPLQTEDNDCRKQ 
Subjt:  MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQS

Query:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
        FSLPVP       SSSSSSQFQSYPLQNFSQKGNLSVF PMILN TT  FSGTQPPCPSQSN+GAGFPFFPMWE
Subjt:  FSLPVPSSSSSSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE

A0A6J1KM30 transcription factor PCF8-like3.3e-4771.15Show/hide
Query:  RRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSS
        RRL S+    AG GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLL NAKSAIDALSRPL+TED    K+SF    PS +SS  SSSSS
Subjt:  RRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSSS

Query:  SQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE
        SQF +YPL+NF + GNLSV  PMI+N T  EFSG QPPC SQSN  +G P FPMWE
Subjt:  SQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE

SwissProt top hitse value%identityAlignment
A2ZMR9 Transcription factor PCF87.5e-1244Show/hide
Query:  RLSSTADAGAG----VGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSS-------
        R S  A A AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG  +P++AI+WL+  A +AIDAL         DC   SF+LP  +S       
Subjt:  RLSSTADAGAG----VGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSS-------

Query:  -----SSSSSSSSSSSQFQSYPLQN
             S+S +S SS     + P  N
Subjt:  -----SSSSSSSSSSSQFQSYPLQN

Q2QM59 Transcription factor PCF87.5e-1244Show/hide
Query:  RLSSTADAGAG----VGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSS-------
        R S  A A AG      KV TS+GLR RR+RLS PTAI FYD+QDRLG  +P++AI+WL+  A +AIDAL         DC   SF+LP  +S       
Subjt:  RLSSTADAGAG----VGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSS-------

Query:  -----SSSSSSSSSSSQFQSYPLQN
             S+S +S SS     + P  N
Subjt:  -----SSSSSSSSSSSQFQSYPLQN

Q8LPR5 Transcription factor TCP43.3e-1262.96Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALS
        KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK++ID L+
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALS

Q8LT05 Transcription factor PCF72.3e-1366.04Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL
        KV T++GLR RR+RL+A TAI+FYD+QDRLG  RP++A+DWL+ NAK+AID L
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL

Q9MAH8 Transcription factor TCP34.7e-1467.27Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR
        KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AKSAID L++
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR

Arabidopsis top hitse value%identityAlignment
AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 33.3e-1567.27Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR
        KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AKSAID L++
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSR

AT2G31070.1 TCP domain protein 104.5e-1237.01Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL----------------SRP------LQTEDNDCR---------KQSF
        KV+TSKG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK+AID L                ++P       Q E+ND           + + 
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDAL----------------SRP------LQTEDNDCR---------KQSF

Query:  SLPVPSSSSSSSSSSSSSQFQSYPLQN
            P++++++    ++  FQ+YP Q+
Subjt:  SLPVPSSSSSSSSSSSSSQFQSYPLQN

AT3G15030.1 TCP family transcription factor 42.4e-1362.96Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALS
        KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK++ID L+
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALS

AT3G15030.2 TCP family transcription factor 42.4e-1362.96Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALS
        KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK++ID L+
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALS

AT3G15030.3 TCP family transcription factor 42.4e-1362.96Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALS
        KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL+  AK++ID L+
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTTCATGATCACGACAAGAACACCGCGAAGATTGCCCGGAGAAACCGTCGACTCTCTTCGACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTC
AAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGACCGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGC
TTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCT
TCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGTCTTCTGTCCAATGATTTTGAATGCCACGAC
GGGAGAATTTTCCGGCACCCAACCACCGTGTCCAAGTCAGAGCAATATCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAG
mRNA sequenceShow/hide mRNA sequence
CTATTCGAAGAAAAAAGAGAAATCCTTCATCAGTATTGCTATTTTTGAAACAATCACAATATATCTGAATGGGTTCTCTTCATGATCACGACAAGAACACCGCGAAGATT
GCCCGGAGAAACCGTCGACTCTCTTCGACTGCCGATGCCGGTGCCGGTGTCGGCAAGGTTTATACTTCAAAAGGTCTCCGAGCAAGGCGGCTTCGGCTCTCGGCTCCGAC
CGCTATTAAATTCTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATTGATTGGCTTCTTCTGAATGCGAAATCCGCCATTGATGCCCTCTCTCGAC
CTTTACAAACAGAGGACAACGATTGTAGAAAACAGAGTTTCAGTTTACCTGTTCCTTCCTCATCGTCTTCTTCTTCTTCTTCCTCTTCTTCTTCACAGTTCCAGTCTTAC
CCACTTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGTCTTCTGTCCAATGATTTTGAATGCCACGACGGGAGAATTTTCCGGCACCCAACCACCGTGTCCAAGTCAGAG
CAATATCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAGCAGCCGCCAACCGGCCGTGATTTTTGAAGAATCATTGGCTTCCATGACGGACAACACACAACGACCC
ACC
Protein sequenceShow/hide protein sequence
MGSLHDHDKNTAKIARRNRRLSSTADAGAGVGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSS
SSSSSSSSSQFQSYPLQNFSQKGNLSVFCPMILNATTGEFSGTQPPCPSQSNIGAGFPFFPMWE