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CSPI01G12590 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G12590
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein SINE1-like
Genome locationChr1:8030731..8031778
RNA-Seq ExpressionCSPI01G12590
SyntenyCSPI01G12590
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0032797 - SMN complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK08426.1 ARM repeat superfamily protein [Cucumis melo var. makuwa]1.5e-6372.92Show/hide
Query:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED
        F  S PRRR   S           IKVED       M   +    +    DLNE  SDYASGSSR RHRSLSSGNLEWSPPRAFLN+NG ADE KLSKED
Subjt:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED

Query:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        EDGL   NGEQSQGS ESISS DG PTHVDVQA+PVAV CQSK+KPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
Subjt:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

XP_004147557.1 protein SINE1 [Cucumis sativus]1.9e-7480.42Show/hide
Query:  FDQSGPRRRYLTSIKVEDDSGQIRNMGCPSINDNI--------EPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDG
        F  S PRRR   S      +  +R+    ++ D I            DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDG
Subjt:  FDQSGPRRRYLTSIKVEDDSGQIRNMGCPSINDNI--------EPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDG

Query:  LGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        LGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
Subjt:  LGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

XP_008441975.1 PREDICTED: uncharacterized protein LOC103485976 [Cucumis melo]1.5e-6372.92Show/hide
Query:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED
        F  S PRRR   S           IKVED       M   +    +    DLNE  SDYASGSSR RHRSLSSGNLEWSPPRAFLN+NG ADE KLSKED
Subjt:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED

Query:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        EDGL   NGEQSQGS ESISS DG PTHVDVQA+PVAV CQSK+KPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
Subjt:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

XP_022156223.1 uncharacterized protein LOC111023161 [Momordica charantia]5.1e-4370.42Show/hide
Query:  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYG
        DLNE  SD+AS S R  +RSLSSGNLEWSP  +F NQNGF D+ KLSKED  GL + NGEQSQG  ES+SS DG P H D+QA PV VA QS MK Q  G
Subjt:  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYG

Query:  MEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        ++MAYKKTALKLVCGFSFLLFT+FTS L I+D DQGSYLVPT
Subjt:  MEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

XP_038883420.1 protein SINE1 [Benincasa hispida]5.3e-5667.2Show/hide
Query:  FDQSGPRRRYLTSIKVEDDSGQIRNMGCPSINDNI--------EPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDG
        F  S PRRR   S      +  +R+ G  ++ D I        +   DLNE  S+Y S SSR RHRSLSSGNLEWSPPR+FLNQ  F D+ K SKED  G
Subjt:  FDQSGPRRRYLTSIKVEDDSGQIRNMGCPSINDNI--------EPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDG

Query:  LGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        L N   EQSQGS ESISS+DG PTH DV+AIPVAVACQSK+KPQY GMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
Subjt:  LGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

TrEMBL top hitse value%identityAlignment
A0A0A0KYP2 Uncharacterized protein9.3e-7580.42Show/hide
Query:  FDQSGPRRRYLTSIKVEDDSGQIRNMGCPSINDNI--------EPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDG
        F  S PRRR   S      +  +R+    ++ D I            DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDG
Subjt:  FDQSGPRRRYLTSIKVEDDSGQIRNMGCPSINDNI--------EPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDG

Query:  LGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        LGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
Subjt:  LGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

A0A1S3B5D3 uncharacterized protein LOC1034859767.4e-6472.92Show/hide
Query:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED
        F  S PRRR   S           IKVED       M   +    +    DLNE  SDYASGSSR RHRSLSSGNLEWSPPRAFLN+NG ADE KLSKED
Subjt:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED

Query:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        EDGL   NGEQSQGS ESISS DG PTHVDVQA+PVAV CQSK+KPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
Subjt:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

A0A5A7UWA1 ARM repeat superfamily protein7.4e-6472.92Show/hide
Query:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED
        F  S PRRR   S           IKVED       M   +    +    DLNE  SDYASGSSR RHRSLSSGNLEWSPPRAFLN+NG ADE KLSKED
Subjt:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED

Query:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        EDGL   NGEQSQGS ESISS DG PTHVDVQA+PVAV CQSK+KPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
Subjt:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

A0A5D3CDJ7 ARM repeat superfamily protein7.4e-6472.92Show/hide
Query:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED
        F  S PRRR   S           IKVED       M   +    +    DLNE  SDYASGSSR RHRSLSSGNLEWSPPRAFLN+NG ADE KLSKED
Subjt:  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKED

Query:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        EDGL   NGEQSQGS ESISS DG PTHVDVQA+PVAV CQSK+KPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
Subjt:  EDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

A0A6J1DQ15 uncharacterized protein LOC1110231612.5e-4370.42Show/hide
Query:  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYG
        DLNE  SD+AS S R  +RSLSSGNLEWSP  +F NQNGF D+ KLSKED  GL + NGEQSQG  ES+SS DG P H D+QA PV VA QS MK Q  G
Subjt:  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYG

Query:  MEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT
        ++MAYKKTALKLVCGFSFLLFT+FTS L I+D DQGSYLVPT
Subjt:  MEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTGTGTATGCCAGCCTCAAAGCATATCACCCTTCGACCAAAGTGGGCCTAGAAGAAGGTATTTGACCTCAATTAAGGTCGAAGATGACTCTGGCCAAATACGAAA
CATGGGATGTCCCTCAATCAATGATAATATTGAGCCATTTGTGGATCTAAACGAGGGGAAATCTGACTATGCTAGCGGAAGTAGCCGATGTAGGCATAGGAGTTTGTCAT
CAGGGAATTTGGAGTGGAGTCCTCCAAGAGCATTTCTAAATCAAAACGGTTTTGCCGATGAACCAAAACTCAGCAAAGAGGATGAAGATGGCTTAGGCAACGGTAATGGT
GAGCAATCACAAGGTAGTTACGAATCGATCTCTTCAGCCGATGGTGCCCCTACCCATGTTGATGTCCAAGCTATACCTGTGGCAGTGGCTTGTCAAAGTAAAATGAAACC
TCAATATTATGGCATGGAGATGGCATATAAGAAGACTGCTTTGAAATTGGTATGTGGCTTTTCATTTTTGCTTTTTACAATATTCACTTCATTGCTATGGATTGATGATC
ACGACCAAGGTTCCTATCTTGTACCAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTGTGTATGCCAGCCTCAAAGCATATCACCCTTCGACCAAAGTGGGCCTAGAAGAAGGTATTTGACCTCAATTAAGGTCGAAGATGACTCTGGCCAAATACGAAA
CATGGGATGTCCCTCAATCAATGATAATATTGAGCCATTTGTGGATCTAAACGAGGGGAAATCTGACTATGCTAGCGGAAGTAGCCGATGTAGGCATAGGAGTTTGTCAT
CAGGGAATTTGGAGTGGAGTCCTCCAAGAGCATTTCTAAATCAAAACGGTTTTGCCGATGAACCAAAACTCAGCAAAGAGGATGAAGATGGCTTAGGCAACGGTAATGGT
GAGCAATCACAAGGTAGTTACGAATCGATCTCTTCAGCCGATGGTGCCCCTACCCATGTTGATGTCCAAGCTATACCTGTGGCAGTGGCTTGTCAAAGTAAAATGAAACC
TCAATATTATGGCATGGAGATGGCATATAAGAAGACTGCTTTGAAATTGGTATGTGGCTTTTCATTTTTGCTTTTTACAATATTCACTTCATTGCTATGGATTGATGATC
ACGACCAAGGTTCCTATCTTGTACCAACATAATGTTCTTGTTGTGCTTCAACTAAAATTGGGTTGAAGCTGTTTGTTGTAAGTTTTGTTGAGTTCAAATGTTGTGTGTCA
AGTAGCAAGAAAGGCATATAGAAGTTTGAAGCAAAAGCAAATGTATTAGATTAGATGGATTTGGACAATGACTCAATGTAAGAATCCCAGTGTGGTCAATGAAGTTCTTG
ACTACAATAGGTATCTTTCTACCTTTGCAAATTATAGAATATGCTCGCTTTCTAGATTGATGTTGTAACATTTAGTTTGAATAGAGTACTTAGCTC
Protein sequenceShow/hide protein sequence
MFCVCQPQSISPFDQSGPRRRYLTSIKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYASGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNG
EQSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDHDQGSYLVPT