; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G13470 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G13470
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr1:8952479..8953606
RNA-Seq ExpressionCSPI01G13470
SyntenyCSPI01G13470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637537.1 hypothetical protein CSA_017393 [Cucumis sativus]2.6e-8778.03Show/hide
Query:  MPQVDWRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPP
        MPQVDWRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGA GS   G       P
Subjt:  MPQVDWRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPP

Query:  SRGLV-------PGPPLRTLLQTTIRTS-TTPDSQA---GLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSH
         +G           P   + +     +S   P S A   G+  SRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATT+VEDSNLSH
Subjt:  SRGLV-------PGPPLRTLLQTTIRTS-TTPDSQA---GLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSH

Query:  PHDGAHGRPVCALARTTSPHGRR
        PHDGAHGRPVCALARTTSPHG R
Subjt:  PHDGAHGRPVCALARTTSPHGRR

KAF1856229.1 hypothetical protein Lal_00046831 [Lupinus albus]6.9e-5653.73Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSP+FSLG+NLPPDW   P  P         QG   TGLSPS APPSRGL PGPPL
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL

Query:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG
        RTLLQTTIRT    DS  GLFP R    R ES   LR     G    + G      R R      S+   +  DS+++     A G+  CA  R   P  
Subjt:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG

Query:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG
                 G     +     D AIHTKYRISLRSSSM+EPRYPLPRV   + ++  RP  HR R +G
Subjt:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG

KAF1856637.1 hypothetical protein Lal_00043456 [Lupinus albus]3.3e-5854.9Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSP+FSLG+NLPPDWGCIPKQPDS TAPRGA GS   G       P +GL PGPPL
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL

Query:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG
        RTLLQTTIRT    DS  GLFP                 R  G    + G      R R      S+   +  DS  + P                    
Subjt:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG

Query:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLR-----SSSMREPRYPLPRVVL
         RALG  A GATCVQRL GSRD AIHTKYRISLR     S  +R P   L R++L
Subjt:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLR-----SSSMREPRYPLPRVVL

KAF1891693.1 hypothetical protein Lal_00031661 [Lupinus albus]1.7e-5751.87Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSP+FSLG+NLPPDWGCIPKQPDS TAPRGA GS   G            + G P 
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL

Query:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG
        +     +     +PD  +     R +W         R     G    + G      R R      S+   +  DS  + PH G                G
Subjt:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG

Query:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG
        RRALG  A GATCVQRL GSRD AIHTKYRISLRSSSM+EPRYPLPRV   + ++  RP  HR R +G
Subjt:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG

KAF1891766.1 hypothetical protein Lal_00031738 [Lupinus albus]1.7e-5751.87Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSP+FSLG+NLPPDWGCIPKQPDS TAPRGA GS   G            + G P 
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL

Query:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG
        +     +     +PD  +     R +W         R     G    + G      R R      S+   +  DS  + PH G                G
Subjt:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG

Query:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG
        RRALG  A GATCVQRL GSRD AIHTKYRISLRSSSM+EPRYPLPRV   + ++  RP  HR R +G
Subjt:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG

TrEMBL top hitse value%identityAlignment
A0A0A0KEK9 Uncharacterized protein7.7e-8576.23Show/hide
Query:  MPQVDWRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPP
        MPQVDWRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGA GS   G       P
Subjt:  MPQVDWRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPP

Query:  SRGLV-------PGPPLRTLLQTTIRTS-TTPDSQA---GLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSH
         +G           P   + +     +S   P S A   G+  SRLTWGRVESVVPLRGRRSEGHAGVRG  V+ ETRHRGWINHRSVATT+VEDSNLSH
Subjt:  SRGLV-------PGPPLRTLLQTTIRTS-TTPDSQA---GLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSH

Query:  PHDGAHGRPVCALARTTSPHGRR
        PHDGAHGRPVCALARTTSPHG R
Subjt:  PHDGAHGRPVCALARTTSPHGRR

A0A0A0L1K6 Uncharacterized protein2.2e-6060.59Show/hide
Query:  SLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLV------PGPPLRTLLQTTIRTST--TPDS---QAGLFPSRLTWGRVESVVPLRG
        SLGQNLPPDWGCIPKQPDSL AP GA GS   G     + P +G           P   L     R S+   P S     G+  S LTWGRVESV PLRG
Subjt:  SLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLV------PGPPLRTLLQTTIRTST--TPDS---QAGLFPSRLTWGRVESVVPLRG

Query:  RRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHGRRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSM
        RR EGHAGVR GD++ ETRHR WI H SVATT+VEDSNLSHPHDGAHGRP                  KA GATCVQR GGSRDPAIHTKYRISLRSSSM
Subjt:  RRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHGRRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSM

Query:  REPRYPLPRVVLSNTTRMLRPPHHRGRYEGRANSFQ
        RE RY LPRVV+SNTTRML PPH      GR   F+
Subjt:  REPRYPLPRVVLSNTTRMLRPPHHRGRYEGRANSFQ

A0A6A5L505 Uncharacterized protein1.6e-5854.9Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSP+FSLG+NLPPDWGCIPKQPDS TAPRGA GS   G       P +GL PGPPL
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL

Query:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG
        RTLLQTTIRT    DS  GLFP                 R  G    + G      R R      S+   +  DS  + P                    
Subjt:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG

Query:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLR-----SSSMREPRYPLPRVVL
         RALG  A GATCVQRL GSRD AIHTKYRISLR     S  +R P   L R++L
Subjt:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLR-----SSSMREPRYPLPRVVL

A0A6A5P3M6 Uncharacterized protein8.0e-5851.87Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL
        SPFHIR  HIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSP+FSLG+NLPPDWGCIPKQPDS TAPRGA GS   G            + G P 
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL

Query:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG
        +     +     +PD  +     R +W         R     G    + G      R R      S+   +  DS  + PH G                G
Subjt:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHG

Query:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG
        RRALG  A GATCVQRL GSRD AIHTKYRISLRSSSM+EPRYPLPRV   + ++  RP  HR R +G
Subjt:  RRALGQKAPGATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG

A0A6N2KBQ5 Uncharacterized protein2.0e-6158.63Show/hide
Query:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL
        SPFHIR G IAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLG+NLPPDWGCIPKQPDS TAPRGA GSS  G       PSRGL  GP L
Subjt:  SPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL

Query:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTT-SPH
        RTLLQTTIRT   PDSQAG FP R      ES+  L+   + G    RG    A    R       V  T  EDS L  P  GA GRPV A A  +    
Subjt:  RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTT-SPH

Query:  GRR-------ALGQKAPGATCVQRLGGSRDPAIHTKYR-ISLRSS-SMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG
        GRR        L Q+A GATCVQRL GSRD AIHTKYR I  R+  S+ E R        S+  +    P HRG YEG
Subjt:  GRR-------ALGQKAPGATCVQRLGGSRDPAIHTKYR-ISLRSS-SMREPRYPLPRVVLSNTTRMLRPPHHRGRYEG

SwissProt top hitse value%identityAlignment
Q8TGM5 Putative uncharacterized protein ART33.1e-0671.79Show/hide
Query:  GATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRV
        GA CVQR   SR+ AIH  YRISLRSSSMREPR PL +V
Subjt:  GATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCAAGTCGATTGGCGGACCGGCTCGTCACCGTTCCACATCCGACTGGGGCACATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTATTTGACTC
TCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCATATTTAGCCTTGGACAGAATTTACCGCCCGATTGGGGCTGCATTCCCA
AACAACCCGACTCGTTGACAGCGCCTCGTGGTGCGCAGGGTTCGAGCGCAACGGGGCTCTCACCCTCTCTGGCGCCCCCTTCCAGGGGACTTGTGCCCGGTCCGCCGCTG
AGGACGCTTCTCCAGACTACAATTCGAACGTCGACGACGCCCGATTCTCAAGCTGGGCTCTTCCCGTCCCGCCTGACCTGGGGTCGCGTCGAGAGTGTCGTCCCTTTGCG
GGGGCGACGTTCGGAGGGTCATGCAGGAGTCCGTGGAGGCGACGTCGAGGCCGAGACGCGTCACCGAGGTTGGATCAACCACCGTAGTGTCGCGACGACGACCGTCGAGG
ACTCGAATTTAAGCCATCCGCACGACGGTGCGCACGGTAGGCCAGTGTGTGCCCTCGCCCGCACAACGAGCCCGCACGGCAGACGTGCCCTCGGCCAGAAGGCTCCGGGC
GCAACTTGCGTTCAAAGACTCGGTGGTTCACGGGATCCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAG
AGTCGTTCTGAGTAATACGACTAGAATGCTCCGCCCCCCGCACCACCGAGGCCGGTACGAGGGGCGGGCGAATTCATTTCAAGTTCCTTGGCGCGACCTACGCCGGTGTT
TTGTTTTAGACGCGCCGGGAGGGGGAGGAGGAAGGCAAGCAAAGAGCGTGCTCGCCTCCCCATCGCCCCCGACGCGGTCGGTTTGTTTTGTAAACGCGTTCGCGGGTCGT
TTGATGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCCAAGTCGATTGGCGGACCGGCTCGTCACCGTTCCACATCCGACTGGGGCACATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTATTTGACTC
TCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCATATTTAGCCTTGGACAGAATTTACCGCCCGATTGGGGCTGCATTCCCA
AACAACCCGACTCGTTGACAGCGCCTCGTGGTGCGCAGGGTTCGAGCGCAACGGGGCTCTCACCCTCTCTGGCGCCCCCTTCCAGGGGACTTGTGCCCGGTCCGCCGCTG
AGGACGCTTCTCCAGACTACAATTCGAACGTCGACGACGCCCGATTCTCAAGCTGGGCTCTTCCCGTCCCGCCTGACCTGGGGTCGCGTCGAGAGTGTCGTCCCTTTGCG
GGGGCGACGTTCGGAGGGTCATGCAGGAGTCCGTGGAGGCGACGTCGAGGCCGAGACGCGTCACCGAGGTTGGATCAACCACCGTAGTGTCGCGACGACGACCGTCGAGG
ACTCGAATTTAAGCCATCCGCACGACGGTGCGCACGGTAGGCCAGTGTGTGCCCTCGCCCGCACAACGAGCCCGCACGGCAGACGTGCCCTCGGCCAGAAGGCTCCGGGC
GCAACTTGCGTTCAAAGACTCGGTGGTTCACGGGATCCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAG
AGTCGTTCTGAGTAATACGACTAGAATGCTCCGCCCCCCGCACCACCGAGGCCGGTACGAGGGGCGGGCGAATTCATTTCAAGTTCCTTGGCGCGACCTACGCCGGTGTT
TTGTTTTAGACGCGCCGGGAGGGGGAGGAGGAAGGCAAGCAAAGAGCGTGCTCGCCTCCCCATCGCCCCCGACGCGGTCGGTTTGTTTTGTAAACGCGTTCGCGGGTCGT
TTGATGTTTTAG
Protein sequenceShow/hide protein sequence
MPQVDWRTGSSPFHIRLGHIAGPHPLPSRQFQALFDSLFKVLFIFPSRYLFAIGLSPIFSLGQNLPPDWGCIPKQPDSLTAPRGAQGSSATGLSPSLAPPSRGLVPGPPL
RTLLQTTIRTSTTPDSQAGLFPSRLTWGRVESVVPLRGRRSEGHAGVRGGDVEAETRHRGWINHRSVATTTVEDSNLSHPHDGAHGRPVCALARTTSPHGRRALGQKAPG
ATCVQRLGGSRDPAIHTKYRISLRSSSMREPRYPLPRVVLSNTTRMLRPPHHRGRYEGRANSFQVPWRDLRRCFVLDAPGGGGGRQAKSVLASPSPPTRSVCFVNAFAGR
LMF