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CSPI01G13530 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G13530
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr1:9006156..9006542
RNA-Seq ExpressionCSPI01G13530
SyntenyCSPI01G13530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-3985Show/hide
Query:  MWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKDVISVIKIRE
        MW KLDE+Y+SKDLPN AYVRERFFTFK+DDNKSLI+NLGEFKKLSSDFKELGD+I DENESFILLNSLPEAYKEVKM L+YGRQKITT  VIS I+ RE
Subjt:  MWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKDVISVIKIRE

XP_038880370.1 uncharacterized protein LOC120072018 [Benincasa hispida]3.8e-3458.47Show/hide
Query:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE
        +E   YG I+LN++D++LR+++++ T Y +W KL+EIY +KDLPN A+ RERFFT+K+D  KSL DNL EFK+LSS+F+ + D I +ENE+FILLNSLPE
Subjt:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE

Query:  AYKEVKMTLKYGRQKITT
        ++K+VK  LKYGR++ITT
Subjt:  AYKEVKMTLKYGRQKITT

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]2.8e-3758.14Show/hide
Query:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE
        +E+  YG IVLN+ D+VLR++++  T Y +W KL++IY +KDLPN A++RERFFT+K+D  KSL DNL EFK LSSDF+ +GD I +ENE+FILLNSLPE
Subjt:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE

Query:  AYKEVKMTLKYGRQKITTKDVISVIKIRE
         +K+VK  LKYGR++ITT  +IS + ++E
Subjt:  AYKEVKMTLKYGRQKITTKDVISVIKIRE

XP_038887098.1 uncharacterized protein LOC120077280 [Benincasa hispida]4.4e-3553.49Show/hide
Query:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE
        +E+  YG I+LN++D+VLR+++++ T Y +W KL+EIY +KD PN  ++RERFFT+K+D  KSL DNL EFK+LSS+F+ +GD I +ENE+FIL NSLPE
Subjt:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE

Query:  AYKEVKMTLKYGRQKITTKDVISVIKIRE
         +K+VK  LKY R++IT   +IS ++++E
Subjt:  AYKEVKMTLKYGRQKITTKDVISVIKIRE

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]4.4e-3559.35Show/hide
Query:  GAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVK
        G IVLN++DNVLR+VIN+ T Y +W KL+EIY +KDL N A++RERFFT+K+D  KSL D L EFK+LSS+F+ +G  I +ENE+FILLNSLPE++K+ K
Subjt:  GAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVK

Query:  MTLKYGRQKITTKDVISVIKIRE
          +KYGR++ITT+ +IS +++RE
Subjt:  MTLKYGRQKITTKDVISVIKIRE

TrEMBL top hitse value%identityAlignment
A0A5A7V269 Putative gag protein1.2e-3060Show/hide
Query:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE
        ME+A YG IVL LSDNVL E+I++ETTY +W KL+E+Y ++DL N AY+ E+FFT+ +D N+SL D L EFKKLS++F+ LGD+ID+ENE+F LLNSL +
Subjt:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE

Query:  AYKEVKMTLK
         Y+EV + LK
Subjt:  AYKEVKMTLK

A0A5A7V6Z9 Retrovirus-related Pol polyprotein from transposon TNT 1-945.9e-3383.53Show/hide
Query:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRI
        MENA YGAIVLNLSDNVLREVI+E+TTYGMW KL+E+Y+SKDLPN AYVRERFFTFK+D NKSL +NLGEFKKLSSDF+ELGD+I
Subjt:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRI

A0A5D3BAU2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.4e-3378.89Show/hide
Query:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENE
        MEN  YGAIVLNLSDNVL+EVI EETTYGMW KL+E+Y+SKDLPN AY+RERF T+K+DDNKSLI+NLGEFKKLS DF+EL D+I DENE
Subjt:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENE

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-948.5e-4085Show/hide
Query:  MWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKDVISVIKIRE
        MW KLDE+Y+SKDLPN AYVRERFFTFK+DDNKSLI+NLGEFKKLSSDFKELGD+I DENESFILLNSLPEAYKEVKM L+YGRQKITT  VIS I+ RE
Subjt:  MWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKDVISVIKIRE

A0A5D3DXZ1 Retrovirus-related Pol polyprotein from transposon TNT 1-943.8e-3278.49Show/hide
Query:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDE-NESF
        MENA YGAIVLNLSDNVLREVI EETTYGMW KL+E+Y+ KDLPN A+VRERFFTFK+DDNK +I+NL EFKKLSS+FKEL D+I DE N SF
Subjt:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDE-NESF

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-1832.56Show/hide
Query:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE
        ++     AI L+LSD+V+  +I+E+T  G+WT+L+ +Y SK L N  Y++++ +   + +  + + +L  F  L +    LG +I++E+++ +LLNSLP 
Subjt:  MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPE

Query:  AYKEVKMTLKYGRQKITTKDVISVIKIRE
        +Y  +  T+ +G+  I  KDV S + + E
Subjt:  AYKEVKMTLKYGRQKITTKDVISVIKIRE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATGCAACCTATGGTGCCATAGTTTTAAACCTAAGTGATAATGTTCTTAGGGAAGTCATTAATGAAGAAACAACTTATGGAATGTGGACAAAATTGGATGAAAT
ATATAAGTCCAAAGATCTACCTAACCATGCATACGTAAGGGAGAGATTCTTTACCTTCAAGGTGGATGACAACAAATCTTTGATAGACAATCTTGGAGAATTCAAGAAGT
TGTCTTCAGATTTCAAAGAATTGGGAGACAGGATTGATGATGAAAATGAATCCTTCATTTTACTTAATTCACTCCCAGAAGCATACAAAGAAGTAAAGATGACTCTCAAA
TATGGAAGGCAAAAAATCACCACAAAGGATGTTATTTCAGTAATAAAAATAAGAGAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATGCAACCTATGGTGCCATAGTTTTAAACCTAAGTGATAATGTTCTTAGGGAAGTCATTAATGAAGAAACAACTTATGGAATGTGGACAAAATTGGATGAAAT
ATATAAGTCCAAAGATCTACCTAACCATGCATACGTAAGGGAGAGATTCTTTACCTTCAAGGTGGATGACAACAAATCTTTGATAGACAATCTTGGAGAATTCAAGAAGT
TGTCTTCAGATTTCAAAGAATTGGGAGACAGGATTGATGATGAAAATGAATCCTTCATTTTACTTAATTCACTCCCAGAAGCATACAAAGAAGTAAAGATGACTCTCAAA
TATGGAAGGCAAAAAATCACCACAAAGGATGTTATTTCAGTAATAAAAATAAGAGAA
Protein sequenceShow/hide protein sequence
MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLK
YGRQKITTKDVISVIKIRE