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CSPI01G13580 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G13580
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationChr1:9085527..9088473
RNA-Seq ExpressionCSPI01G13580
SyntenyCSPI01G13580
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051747.1 hypothetical protein E6C27_scaffold60G001390 [Cucumis melo var. makuwa]4.4e-3192.21Show/hide
Query:  MRQRVAVAVIIMLALMIMNTFFLVDGRHLKLQDEEEEKNPIENQKLTGRKQYETSEYNHHGCYRSDYNCWSNKETKE
        MRQ VAVAV+IMLALMIMNTFFLVDGRHL+LQDEE EKNPIE+QKL GRKQYETSEYNHHGCYRSDYNCWSNKETKE
Subjt:  MRQRVAVAVIIMLALMIMNTFFLVDGRHLKLQDEEEEKNPIENQKLTGRKQYETSEYNHHGCYRSDYNCWSNKETKE

KAA0058392.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-1075.56Show/hide
Query:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS
        MRYLKKTQN+GLHY KFPVV E Y D DWN +LDDS  TSGYIF+
Subjt:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS

KAA0060459.1 hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa]1.1e-1075.56Show/hide
Query:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS
        MRYLKKTQN+GLHY KFPVV E Y D DWN +LDDS  TSGYIF+
Subjt:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS

KAA0064304.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.3e-1073.33Show/hide
Query:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS
        M+YLKKTQN+GLHY KFP V E Y DVDWN + DDS VTSGYIF+
Subjt:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS

KAG6607148.1 hypothetical protein SDJN03_00490, partial [Cucurbita argyrosperma subsp. sororia]2.6e-1561.25Show/hide
Query:  EKMRQRVAVAVIIMLALMIMNTFFLVDGRHLKLQDEEEEKNPIENQKLTGRKQYETSEYNHHGCYRSDYNCWSN-KETKE
        EKM+ R  VAV +++  MI+NT F+ DGRHLKLQ + +     ENQ L  +K YET+EYNHHGCYRSDYNCWSN KET+E
Subjt:  EKMRQRVAVAVIIMLALMIMNTFFLVDGRHLKLQDEEEEKNPIENQKLTGRKQYETSEYNHHGCYRSDYNCWSN-KETKE

TrEMBL top hitse value%identityAlignment
A0A5A7UR95 Retrovirus-related Pol polyprotein from transposon TNT 1-945.5e-1175.56Show/hide
Query:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS
        MRYLKKTQN+GLHY KFPVV E Y D DWN +LDDS  TSGYIF+
Subjt:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS

A0A5A7VAP6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-1073.33Show/hide
Query:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS
        M+YLKKTQN+GLHY KFP V E Y DVDWN + DDS VTSGYIF+
Subjt:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS

A0A5D3BP15 Pentatricopeptide repeat-containing protein4.6e-1068.52Show/hide
Query:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFSRKVIADHVW
        MRYLKKTQ +GLHYQKFPVV E Y DV WN +LD S  TSGYIF+  V  D VW
Subjt:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFSRKVIADHVW

A0A5D3CI92 Uncharacterized protein2.1e-3192.21Show/hide
Query:  MRQRVAVAVIIMLALMIMNTFFLVDGRHLKLQDEEEEKNPIENQKLTGRKQYETSEYNHHGCYRSDYNCWSNKETKE
        MRQ VAVAV+IMLALMIMNTFFLVDGRHL+LQDEE EKNPIE+QKL GRKQYETSEYNHHGCYRSDYNCWSNKETKE
Subjt:  MRQRVAVAVIIMLALMIMNTFFLVDGRHLKLQDEEEEKNPIENQKLTGRKQYETSEYNHHGCYRSDYNCWSNKETKE

A0A5D3D4T4 Reverse transcriptase Ty1/copia-type domain-containing protein5.5e-1175.56Show/hide
Query:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS
        MRYLKKTQN+GLHY KFPVV E Y D DWN +LDDS  TSGYIF+
Subjt:  MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATACCTTAAGAAAACCCAGAACATAGGATTACATTATCAAAAGTTTCCTGTTGTTCAAGAAAGTTACTATGATGTTGATTGGAACTTCATCTTGGATGACTCAAA
TGTTACAAGTGGCTATATTTTTAGTAGGAAAGTAATAGCGGATCACGTATGGACTGATGATGATAACTTGGCTAATCATTTGACCAAAGGTCTAGCTAGAGAGAGTTTTT
CAAAACCTCAAAAAGAATGGGACTCAAGTCTAAAGAAAATTGAATCGCCTGTAAGTGAGCTTTTTGGACATGTTCACGGGTTGAAAGTAAGGTTTGCTGAAATGGCAATT
ACTGAGAAGATGAGACAAAGAGTAGCGGTTGCCGTAATCATCATGTTGGCGTTGATGATTATGAACACTTTCTTCCTTGTTGATGGAAGGCATTTGAAGTTGCAAGACGA
AGAGGAAGAGAAGAATCCTATTGAGAATCAAAAGTTAACAGGTAGAAAACAATATGAAACAAGTGAATATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGA
GTAATAAGGAGACGAAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATACCTTAAGAAAACCCAGAACATAGGATTACATTATCAAAAGTTTCCTGTTGTTCAAGAAAGTTACTATGATGTTGATTGGAACTTCATCTTGGATGACTCAAA
TGTTACAAGTGGCTATATTTTTAGTAGGAAAGTAATAGCGGATCACGTATGGACTGATGATGATAACTTGGCTAATCATTTGACCAAAGGTCTAGCTAGAGAGAGTTTTT
CAAAACCTCAAAAAGAATGGGACTCAAGTCTAAAGAAAATTGAATCGCCTGTAAGTGAGCTTTTTGGACATGTTCACGGGTTGAAAGTAAGGTTTGCTGAAATGGCAATT
ACTGAGAAGATGAGACAAAGAGTAGCGGTTGCCGTAATCATCATGTTGGCGTTGATGATTATGAACACTTTCTTCCTTGTTGATGGAAGGCATTTGAAGTTGCAAGACGA
AGAGGAAGAGAAGAATCCTATTGAGAATCAAAAGTTAACAGGTAGAAAACAATATGAAACAAGTGAATATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGA
GTAATAAGGAGACGAAGGAATAA
Protein sequenceShow/hide protein sequence
MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFSRKVIADHVWTDDDNLANHLTKGLARESFSKPQKEWDSSLKKIESPVSELFGHVHGLKVRFAEMAI
TEKMRQRVAVAVIIMLALMIMNTFFLVDGRHLKLQDEEEEKNPIENQKLTGRKQYETSEYNHHGCYRSDYNCWSNKETKE