CuGenDBv2

Gene ID	CSPI01G13860
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Photosystem II protein D1
Genome location	Chr1:9472890..9473625
RNA-Seq Expression	CSPI01G13860
Synteny	CSPI01G13860
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QBX00216.1 photosystem II protein A [Pelargonium tongaense]

1.2e-76

98.66

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Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+T
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT

QVV96673.1 photosystem II protein D1 [Illigera grandiflora]

1.2e-76

96.08

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Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+   R+
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD

YP_009339856.1 photosystem II protein D1 [Lobelia jasionoides]

1.2e-76

95.42

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAA++T  ++
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD

YP_009371095.1 PsbA [Vernicia fordii]

1.2e-76

98.66

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Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+T
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT

YP_009656419.1 photosystem II protein D1 [Medicago suffruticosa]

1.6e-76

96.08

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Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+   R+
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD

TrEMBL top hits

e value

%identity

Alignment

A0A1L6BTH4 Photosystem II protein D1

5.8e-77

95.42

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAA++T  ++
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKTMDRD

A0A1X9RPH6 Photosystem II protein D1

5.8e-77

98.66

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+T
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT

A0A411JW50 Photosystem II protein D1

7.6e-77

97.99

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAA++T
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT

A0A4D5YWE9 Photosystem II protein D1

5.8e-77

98.66

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+T
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT

A0A7U0FMV5 Photosystem II protein D1

7.6e-77

97.99

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAA++T
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT

SwissProt top hits

e value

%identity

Alignment

A4QJZ9 Photosystem II protein D1

7.8e-79

98.65

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK

A4QKH2 Photosystem II protein D1

7.8e-79

98.65

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK

B1A915 Photosystem II protein D1

7.8e-79

98.65

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK

P11848 Photosystem II protein D1

4.6e-79

97.99

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV++
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKT

P83755 Photosystem II protein D1

7.8e-79

98.65

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

5.6e-80

98.65

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK
        FNFNQSVVDSQGRVINTWADIINRA+LGMEVMHERNAHNFPLDLAAV+
Subjt:  FNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVK

ATCG00270.1 photosystem II reaction center protein D

1.3e-12

36.89

Show/hide

Query:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG
        +GVAGV G +L  A+HG+ V ++L  E  +  +    +   Q EETY++V A+ ++ ++     +F+N R LHFF+   PV G+W +ALG+  +A NL  
Subjt:  LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNG

Query:  FNF
        ++F
Subjt:  FNF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAACACTTTTTGGACATTCTACCCTGTAACGTGGATACTTCAGATCCCGCTTGAACGAAACGAAAGATATTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAG
TGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCG
TAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC
ACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAA
CCGTGCTCATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTAAAACCATGGACCGGGACAAAAGAAAGTACAAAATTT
TTCCCGTATCAGTGATAAGTACCAGTGACTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNTFWTFYPVTWILQIPLERNERYLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWF
TALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRAHLGMEVMHERNAHNFPLDLAAVKTMDRDKRKYKIFPVSVISTSD

CSPI01G13860 (gene) of Cucumber (PI 183967) v1 genome