CuGenDBv2

Gene ID	CSPI01G14180
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ycf20-like protein isoform X1
Genome location	Chr1:9772600..9773177
RNA-Seq Expression	CSPI01G14180
Synteny	CSPI01G14180
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR007572 - Uncharacterised protein family Ycf20

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579671.1 hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-42

64.1

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------
        MAQ ASLV T LLNY FT + N SYWRYDM+KSRPSP RS  +K VQDT GP R+VDIIRLVPE+SRNYFR+                            
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------

Query:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
         GVNDV A VVC+LLT+ VTRFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Subjt:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

XP_004143642.1 uncharacterized protein ycf20 [Cucumis sativus]

2.2e-50

71.79

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------
        MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIRLVPELSRNYFR+                            
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------

Query:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
         GVNDV A VVC+LLT+ VTRFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Subjt:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

XP_008467245.1 PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]

5.9e-48

69.23

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------
        MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIRLVPELSRNYFR+                            
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------

Query:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
         GVNDV A VVC+LLT+ VTRFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Subjt:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

XP_022969949.1 uncharacterized protein ycf20 [Cucurbita maxima]

1.7e-42

64.1

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------
        MAQ ASLV T LLNY FT + N SYWRYD++KSRPSP RS  +K VQDT GP R+VDIIRLVPELSRNYFR+                            
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------

Query:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
         GVNDV A VVC+LLT+ VTRFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Subjt:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

XP_038874767.1 uncharacterized protein ycf20 [Benincasa hispida]

3.1e-44

67.31

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------
        MAQ ASLVHTSLLNYGFT    P YWRYDM KSRPSP RS R+K VQDT GP R+VDIIRLVPELSRNYFR+                            
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------

Query:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
         GVNDV A VVC+LLT+ VTRFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Subjt:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPS1 Uncharacterized protein

1.1e-50

71.79

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------
        MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIRLVPELSRNYFR+                            
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------

Query:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
         GVNDV A VVC+LLT+ VTRFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Subjt:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

A0A0A0LV86 Uncharacterized protein

1.5e-65

100

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKV
        MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKV
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKV

Query:  TFPIALLNNFKMGFTCGLFIDAFKL
        TFPIALLNNFKMGFTCGLFIDAFKL
Subjt:  TFPIALLNNFKMGFTCGLFIDAFKL

A0A1S3CT33 uncharacterized protein ycf20 isoform X1

2.9e-48

69.23

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------
        MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIRLVPELSRNYFR+                            
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------

Query:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
         GVNDV A VVC+LLT+ VTRFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Subjt:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

A0A6J1ESY7 uncharacterized protein ycf20

1.1e-42

64.1

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------
        MAQ ASLV T LLNY FT + N SYWRYD++KSRPSP RS  +K VQDT GP R+VDIIRLVPELSRNYFR+                            
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------

Query:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
         GVNDV A VVC+LLT+ VTRFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Subjt:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

A0A6J1I440 uncharacterized protein ycf20

8.1e-43

64.1

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------
        MAQ ASLV T LLNY FT + N SYWRYD++KSRPSP RS  +K VQDT GP R+VDIIRLVPELSRNYFR+                            
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRT----------------------------

Query:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
         GVNDV A VVC+LLT+ VTRFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Subjt:  FGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G43050.1 Protein of unknown function (DUF565)

1.1e-26

44.3

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Query:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPS--RIVDIIRLVPELSRNYFR---------------------------
        MA   S + T+L +    H    S+  +     +   + +  ++ +Q+TEGP+  R++DIIR VPE+SRNYF+                           
Subjt:  MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPS--RIVDIIRLVPELSRNYFR---------------------------

Query:  -TFGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS
           GVNDV A V+C+LLT+ VTRFYY+R  VTFPIALLNNFKMGFT GLFIDAFKLAS
Subjt:  -TFGVNDVFATVVCILLTD-VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS

Sequences

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CDS sequence

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ATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCC
TCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAACTTTTG
GAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTC
AAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

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AGCCTTTGTGTTCTATGTATTAGTGACTCATCAGTTTAAGCAAAATACTCTTTAATGATCTCAGGTTCTCAACATTTTTTTATACAGCCGTCTAGGAAGTGAAACCTTCA
ATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCC
TCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAACTTTTG
GAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTC
AAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

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MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNF
KMGFTCGLFIDAFKLAS

CSPI01G14180 (gene) of Cucumber (PI 183967) v1 genome