CuGenDBv2

Gene ID	CSPI01G14270
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	syndetin
Genome location	Chr1:9870697..9884947
RNA-Seq Expression	CSPI01G14270
Synteny	CSPI01G14270
Gene Ontology terms	GO:0032456 - endocytic recycling (biological process) GO:0042147 - retrograde transport, endosome to Golgi (biological process) GO:0005829 - cytosol (cellular component) GO:1990745 - EARP complex (cellular component)
InterPro domains	IPR019515 - Vacuolar protein sorting-associated protein 54, N-terminal IPR040047 - Syndetin

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008462106.1 PREDICTED: syndetin [Cucumis melo]

6.0e-169

98.45

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
        MQPNLFPFGSALGNPLAFDGDLSEGFET RFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS

Query:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
        LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRL QLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
Subjt:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN

Query:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
        VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLD+LPVLSELRHAVDMQSMLE+LVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
Subjt:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL

Query:  QKLDSLLIEVCQEFKEEAYLTV
        QKLDSLLIEVCQEFK+EAYLTV
Subjt:  QKLDSLLIEVCQEFKEEAYLTV

XP_011654226.1 syndetin isoform X1 [Cucumis sativus]

2.9e-171

100

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
        MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS

Query:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
        LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
Subjt:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN

Query:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
        VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
Subjt:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL

Query:  QKLDSLLIEVCQEFKEEAYLTV
        QKLDSLLIEVCQEFKEEAYLTV
Subjt:  QKLDSLLIEVCQEFKEEAYLTV

XP_022152900.1 syndetin isoform X1 [Momordica charantia]

5.4e-162

94.72

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
        MQPNLFPFGS LGNPLAFDGDLSEGF T RFLFFVPF LLQGGGMDLS+VGEKILSSVRSARSLGLLP TSDRPEVPARAVAAAAVARALAGLPPHQRFS
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS

Query:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
        LSSSSEELSSIYGSRNHG EVEELEEVFYEE+FDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
Subjt:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN

Query:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
        VICRNGKRHL SSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRH VDMQSMLE LVEEGNYYKAFQVLSEYLQLLDS SELSVIQ+MSRGVE+WLGR L
Subjt:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL

Query:  QKLDSLLIEVCQEFKEEAYLTV
        QKLDSLLIEVCQEFK+E YLTV
Subjt:  QKLDSLLIEVCQEFKEEAYLTV

XP_022152901.1 syndetin isoform X2 [Momordica charantia]

5.4e-162

94.72

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
        MQPNLFPFGS LGNPLAFDGDLSEGF T RFLFFVPF LLQGGGMDLS+VGEKILSSVRSARSLGLLP TSDRPEVPARAVAAAAVARALAGLPPHQRFS
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS

Query:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
        LSSSSEELSSIYGSRNHG EVEELEEVFYEE+FDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
Subjt:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN

Query:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
        VICRNGKRHL SSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRH VDMQSMLE LVEEGNYYKAFQVLSEYLQLLDS SELSVIQ+MSRGVE+WLGR L
Subjt:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL

Query:  QKLDSLLIEVCQEFKEEAYLTV
        QKLDSLLIEVCQEFK+E YLTV
Subjt:  QKLDSLLIEVCQEFKEEAYLTV

XP_038895533.1 syndetin isoform X1 [Benincasa hispida]

1.5e-167

97.83

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
        MQPNLFPFGS LGNPLAFDGDLSEGFET RFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVAR LAGLPPHQRFS
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS

Query:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
        LSSSSEELSSIYGSRNHGHEVEELEEVFYEE+FDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLS HVMEHHEVMVKGMHLVRELEKDLKIAN
Subjt:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN

Query:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
        VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLE LVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
Subjt:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL

Query:  QKLDSLLIEVCQEFKEEAYLTV
        QKLDSLLIEVCQEFK+EAYLTV
Subjt:  QKLDSLLIEVCQEFKEEAYLTV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LV98 Vps54_N domain-containing protein

8.7e-174

100

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
        MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS

Query:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
        LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
Subjt:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN

Query:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
        VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
Subjt:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL

Query:  QKLDSLLIEVCQEFKEEAYLTVRIVLL
        QKLDSLLIEVCQEFKEEAYLTVRIVLL
Subjt:  QKLDSLLIEVCQEFKEEAYLTVRIVLL

A0A1S3CG39 syndetin

2.9e-169

98.45

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
        MQPNLFPFGSALGNPLAFDGDLSEGFET RFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS

Query:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
        LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRL QLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
Subjt:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN

Query:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
        VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLD+LPVLSELRHAVDMQSMLE+LVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
Subjt:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL

Query:  QKLDSLLIEVCQEFKEEAYLTV
        QKLDSLLIEVCQEFK+EAYLTV
Subjt:  QKLDSLLIEVCQEFKEEAYLTV

A0A6J1DF95 syndetin isoform X1

2.6e-162

94.72

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
        MQPNLFPFGS LGNPLAFDGDLSEGF T RFLFFVPF LLQGGGMDLS+VGEKILSSVRSARSLGLLP TSDRPEVPARAVAAAAVARALAGLPPHQRFS
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS

Query:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
        LSSSSEELSSIYGSRNHG EVEELEEVFYEE+FDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
Subjt:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN

Query:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
        VICRNGKRHL SSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRH VDMQSMLE LVEEGNYYKAFQVLSEYLQLLDS SELSVIQ+MSRGVE+WLGR L
Subjt:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL

Query:  QKLDSLLIEVCQEFKEEAYLTV
        QKLDSLLIEVCQEFK+E YLTV
Subjt:  QKLDSLLIEVCQEFKEEAYLTV

A0A6J1DJ46 syndetin isoform X2

2.6e-162

94.72

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS
        MQPNLFPFGS LGNPLAFDGDLSEGF T RFLFFVPF LLQGGGMDLS+VGEKILSSVRSARSLGLLP TSDRPEVPARAVAAAAVARALAGLPPHQRFS
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFS

Query:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
        LSSSSEELSSIYGSRNHG EVEELEEVFYEE+FDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN
Subjt:  LSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIAN

Query:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL
        VICRNGKRHL SSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRH VDMQSMLE LVEEGNYYKAFQVLSEYLQLLDS SELSVIQ+MSRGVE+WLGR L
Subjt:  VICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTL

Query:  QKLDSLLIEVCQEFKEEAYLTV
        QKLDSLLIEVCQEFK+E YLTV
Subjt:  QKLDSLLIEVCQEFKEEAYLTV

A0A6J1HWS6 syndetin

9.3e-160

93.21

Show/hide

Query:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPE--VPARAVAAAAVARALAGLPPHQR
        MQPNLFPFGS LGNPL ++GDLSEGFET RFLFFVPF LLQGGGMDLSKVGEKILSSVRSARSLGLLPT +DRPE  VPARAVAAAAVARALAGLPPHQR
Subjt:  MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPE--VPARAVAAAAVARALAGLPPHQR

Query:  FSLSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKI
        FSL SSSEELSSIYGSR+HGHEVEELEEVFYEE+FDPVRHVLEHVPSEENDLEYLEKQAT RLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKI
Subjt:  FSLSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKI

Query:  ANVICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGR
        ANVICRNGKRHL SSMLEVSRDLIVNSNSKKKQALLDM+PVLSELRHAVDMQSMLE LVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVE+WLGR
Subjt:  ANVICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGR

Query:  TLQKLDSLLIEVCQEFKEEAYLTV
        TLQKLD LLI+VCQEFK+E YLTV
Subjt:  TLQKLDSLLIEVCQEFKEEAYLTV

SwissProt top hits

e value

%identity

Alignment

F1LSG8 Syndetin

1.8e-11

27.54

Show/hide

Query:  VEELEEVFYE-EEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIANVICRNGKRHLN---SSMLE
        +  +E+V++  + FD V++ LE +P   N L+ LE+   K   Q   V+++++  ++E     VK +  V  L+  L++A VIC N +RHLN       +
Subjt:  VEELEEVFYE-EEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIANVICRNGKRHLN---SSMLE

Query:  VSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTLQKLDSLLIEVCQEFKE
         S  L+  +N +K+Q L+ +L  L  ++        L  ++EE +Y  A Q+  E  +   +F   S I E++  ++  L +  ++LD  L ++C+ F  
Subjt:  VSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTLQKLDSLLIEVCQEFKE

Query:  EAYLTVR
          Y  V+
Subjt:  EAYLTVR

Q5ZKV9 Syndetin

5.5e-08

25.71

Show/hide

Query:  VEELEEVFYEEE-FDPVRHVLEHVP---SEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIANVICRNGKRHLN---SS
        +  +EEV++  + FD V++ LE +P   S +   EY +K   ++ A+L++V                        L+  L++A VIC +G+RHLN     
Subjt:  VEELEEVFYEEE-FDPVRHVLEHVP---SEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIANVICRNGKRHLN---SS

Query:  MLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTLQKLDSLLIEVCQE
          + S  L+  +N +K+Q L+ +L  L  ++        L  ++EE +Y  A Q+  E  +   +F   S I E++  ++  L +  ++LD  L ++C+ 
Subjt:  MLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTLQKLDSLLIEVCQE

Query:  FKEEAYLTVR
        F    Y  V+
Subjt:  FKEEAYLTVR

Q8CI71 Syndetin

2.8e-12

28.02

Show/hide

Query:  VEELEEVFYE-EEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIANVICRNGKRHLN---SSMLE
        +  +E+V++  + FD V++ LE +P   N L+ LE+   K   Q   V+++++  ++E     VK +  V  L+  L++A VIC NG+RHLN       +
Subjt:  VEELEEVFYE-EEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIANVICRNGKRHLN---SSMLE

Query:  VSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTLQKLDSLLIEVCQEFKE
         S  L+  +N +K+Q L+ +L  L  ++        L  ++EE +Y  A Q+  E  +   +F   S I E++  ++  L +  ++LD  L ++C+ F  
Subjt:  VSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTLQKLDSLLIEVCQEFKE

Query:  EAYLTVR
          Y  V+
Subjt:  EAYLTVR

Q96JG6 Syndetin

6.3e-12

28.02

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Query:  VEELEEVFYE-EEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIANVICRNGKRHLN---SSMLE
        +  +E+V++  + FD V++ LE +P   N L+ LE    K   Q   V+++++  ++E     VK +  V  L+  L++A VIC NG+RHLN       +
Subjt:  VEELEEVFYE-EEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIANVICRNGKRHLN---SSMLE

Query:  VSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTLQKLDSLLIEVCQEFKE
         S  L+  +N +K+Q L+ +L  L  ++        L  ++EE +Y  A Q+  E  +   +F   S I E++  ++  L +  ++LD  L ++C+ F  
Subjt:  VSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTLQKLDSLLIEVCQEFKE

Query:  EAYLTVR
          Y  V+
Subjt:  EAYLTVR

Arabidopsis top hits

e value

%identity

Alignment

AT2G27900.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

2.2e-121

72.37

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Query:  MQPNL-FPFGSALGNPLAFD--GDLSE-----GFETPRFLFFVPFLLLQGGG-MDLSKVGEKILSSVRSARSLGLL--PTTSDRPEVPARAVAAAAVARA
        MQPNL FPFGS LGNP  F+  GDL+E      FE+ R  F +PFLL QG G MDLSKVGEK LSSV+SA SLGLL  P+ SDRPE+PARA AAAAVARA
Subjt:  MQPNL-FPFGSALGNPLAFD--GDLSE-----GFETPRFLFFVPFLLLQGGG-MDLSKVGEKILSSVRSARSLGLL--PTTSDRPEVPARAVAAAAVARA

Query:  LAGLPPHQRFSLSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLV
        LAGLP  QR S+SS++ EL+SIYG+R    +VEELEE FYEE+FDPVRH+LE+VP +E++L Y EKQAT RL QLDKVAE LS HVMEHHEVMVKGM+LV
Subjt:  LAGLPPHQRFSLSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLV

Query:  RELEKDLKIANVICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMS
        RELEKDLKIANVIC+NG+R+L SSM E SRDLIV+++SKKKQALLDMLP+L++LRHA  MQS LE LVE+GNY KAFQVLSEYLQLLDS SE S  QEM+
Subjt:  RELEKDLKIANVICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMS

Query:  RGVEIWLGRTLQKLDSLLIEVCQEFKEEAYLTV
        RGVE+WLGRTL KLDSLL+ VCQEFKE++Y+ V
Subjt:  RGVEIWLGRTLQKLDSLLIEVCQEFKEEAYLTV

AT2G27900.2 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

2.2e-121

72.37

Show/hide

Query:  MQPNL-FPFGSALGNPLAFD--GDLSE-----GFETPRFLFFVPFLLLQGGG-MDLSKVGEKILSSVRSARSLGLL--PTTSDRPEVPARAVAAAAVARA
        MQPNL FPFGS LGNP  F+  GDL+E      FE+ R  F +PFLL QG G MDLSKVGEK LSSV+SA SLGLL  P+ SDRPE+PARA AAAAVARA
Subjt:  MQPNL-FPFGSALGNPLAFD--GDLSE-----GFETPRFLFFVPFLLLQGGG-MDLSKVGEKILSSVRSARSLGLL--PTTSDRPEVPARAVAAAAVARA

Query:  LAGLPPHQRFSLSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLV
        LAGLP  QR S+SS++ EL+SIYG+R    +VEELEE FYEE+FDPVRH+LE+VP +E++L Y EKQAT RL QLDKVAE LS HVMEHHEVMVKGM+LV
Subjt:  LAGLPPHQRFSLSSSSEELSSIYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLV

Query:  RELEKDLKIANVICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMS
        RELEKDLKIANVIC+NG+R+L SSM E SRDLIV+++SKKKQALLDMLP+L++LRHA  MQS LE LVE+GNY KAFQVLSEYLQLLDS SE S  QEM+
Subjt:  RELEKDLKIANVICRNGKRHLNSSMLEVSRDLIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMS

Query:  RGVEIWLGRTLQKLDSLLIEVCQEFKEEAYLTV
        RGVE+WLGRTL KLDSLL+ VCQEFKE++Y+ V
Subjt:  RGVEIWLGRTLQKLDSLLIEVCQEFKEEAYLTV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGCCAAACCTGTTTCCATTTGGCAGTGCTCTCGGAAACCCTTTGGCGTTCGATGGTGATTTGAGCGAAGGATTCGAGACTCCCAGGTTTCTCTTCTTTGTTCCCTT
TTTATTGCTGCAAGGAGGTGGAATGGACTTGTCCAAGGTTGGGGAGAAAATTTTGAGCTCCGTCAGGTCAGCTAGATCGCTTGGACTTCTTCCTACCACTTCTGATCGGC
CGGAGGTTCCGGCACGTGCTGTGGCTGCAGCAGCTGTCGCCCGTGCGCTTGCGGGATTGCCTCCGCACCAGAGATTTAGTCTCTCATCTAGCTCGGAAGAACTGAGCTCA
ATATATGGCAGTAGAAATCATGGCCACGAAGTAGAGGAACTAGAGGAAGTTTTCTATGAAGAGGAATTTGACCCGGTTAGGCATGTATTAGAGCATGTTCCATCAGAAGA
AAATGATCTCGAATATTTGGAGAAACAGGCTACTAAGAGATTAGCTCAACTTGATAAAGTGGCTGAACGTTTATCTCGCCATGTAATGGAGCATCATGAAGTGATGGTGA
AGGGGATGCATTTGGTCAGGGAGTTGGAGAAAGATTTGAAAATTGCGAATGTCATCTGCAGGAATGGGAAGAGACACCTAAATTCGTCAATGCTTGAAGTGTCCAGAGAT
CTTATTGTAAACTCTAACTCCAAGAAGAAACAAGCACTTCTGGATATGCTTCCAGTTTTGAGTGAGCTTCGTCATGCTGTGGACATGCAATCAATGCTTGAGGTCCTTGT
TGAAGAGGGAAATTATTATAAGGCTTTTCAGGTCTTATCTGAGTATTTGCAGCTATTAGATAGTTTTTCAGAGCTTTCAGTAATTCAAGAGATGAGTCGTGGTGTTGAGA
TTTGGCTTGGAAGAACCCTGCAAAAGTTGGATTCGCTTTTGATAGAAGTCTGCCAGGAGTTCAAGGAGGAGGCATATTTAACCGTGAGGATTGTTTTATTGTGA

mRNA sequence

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ATTATTACAAGAATGGTTGCCTAAGGCCGTCGGTCGCCGACTGTCGCAGCTGAAATCAGTCAAGATTCCAGAGTTTCCTAAAGTCTACGAAACAGCAAATAAAACAACAA
AAGCTAACGGACGCATCATCTTCCTCATTTCCCACTTCTGGAATTTCTTTTGGGTCGAAACGGATTGATTCAAGTCCTGATCTTCGTAGATTCAACAGATCGAATTTCAG
GGGAGTGTCATCGCATCAAATGTGCGGCACAGGGCAGGTTGAACTTGTTAACCTGATGTGAAATGCAGCCAAACCTGTTTCCATTTGGCAGTGCTCTCGGAAACCCTTTG
GCGTTCGATGGTGATTTGAGCGAAGGATTCGAGACTCCCAGGTTTCTCTTCTTTGTTCCCTTTTTATTGCTGCAAGGAGGTGGAATGGACTTGTCCAAGGTTGGGGAGAA
AATTTTGAGCTCCGTCAGGTCAGCTAGATCGCTTGGACTTCTTCCTACCACTTCTGATCGGCCGGAGGTTCCGGCACGTGCTGTGGCTGCAGCAGCTGTCGCCCGTGCGC
TTGCGGGATTGCCTCCGCACCAGAGATTTAGTCTCTCATCTAGCTCGGAAGAACTGAGCTCAATATATGGCAGTAGAAATCATGGCCACGAAGTAGAGGAACTAGAGGAA
GTTTTCTATGAAGAGGAATTTGACCCGGTTAGGCATGTATTAGAGCATGTTCCATCAGAAGAAAATGATCTCGAATATTTGGAGAAACAGGCTACTAAGAGATTAGCTCA
ACTTGATAAAGTGGCTGAACGTTTATCTCGCCATGTAATGGAGCATCATGAAGTGATGGTGAAGGGGATGCATTTGGTCAGGGAGTTGGAGAAAGATTTGAAAATTGCGA
ATGTCATCTGCAGGAATGGGAAGAGACACCTAAATTCGTCAATGCTTGAAGTGTCCAGAGATCTTATTGTAAACTCTAACTCCAAGAAGAAACAAGCACTTCTGGATATG
CTTCCAGTTTTGAGTGAGCTTCGTCATGCTGTGGACATGCAATCAATGCTTGAGGTCCTTGTTGAAGAGGGAAATTATTATAAGGCTTTTCAGGTCTTATCTGAGTATTT
GCAGCTATTAGATAGTTTTTCAGAGCTTTCAGTAATTCAAGAGATGAGTCGTGGTGTTGAGATTTGGCTTGGAAGAACCCTGCAAAAGTTGGATTCGCTTTTGATAGAAG
TCTGCCAGGAGTTCAAGGAGGAGGCATATTTAACCGTGAGGATTGTTTTATTGTGA

Protein sequence

Show/hide protein sequence

MQPNLFPFGSALGNPLAFDGDLSEGFETPRFLFFVPFLLLQGGGMDLSKVGEKILSSVRSARSLGLLPTTSDRPEVPARAVAAAAVARALAGLPPHQRFSLSSSSEELSS
IYGSRNHGHEVEELEEVFYEEEFDPVRHVLEHVPSEENDLEYLEKQATKRLAQLDKVAERLSRHVMEHHEVMVKGMHLVRELEKDLKIANVICRNGKRHLNSSMLEVSRD
LIVNSNSKKKQALLDMLPVLSELRHAVDMQSMLEVLVEEGNYYKAFQVLSEYLQLLDSFSELSVIQEMSRGVEIWLGRTLQKLDSLLIEVCQEFKEEAYLTVRIVLL

CSPI01G14270 (gene) of Cucumber (PI 183967) v1 genome