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CSPI01G14370 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G14370
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTudor domain-containing protein
Genome locationChr1:10032494..10032824
RNA-Seq ExpressionCSPI01G14370
SyntenyCSPI01G14370
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0007064 - mitotic sister chromatid cohesion (biological process)
GO:0009556 - microsporogenesis (biological process)
GO:0035825 - homologous recombination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039776 - Sister chromatid cohesion protein Pds5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040949.1 protein starmaker [Cucumis melo var. makuwa]1.1e-1584.21Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        RHSNINVKVAVAACVSEI RI APNAPYSD +MKEVFHLIVSSFEN+S KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
KAE8652798.1 hypothetical protein Csa_022758 [Cucumis sativus]6.3e-3595.06Show/hide
Query:  MECLGFWSTSRHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRKGHPFLKLSQGSNHV
        MECLGFWSTSRHSNINVKVAVAACVSEI RITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSL+KGHPFLKLSQ S+HV
Subjt:  MECLGFWSTSRHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRKGHPFLKLSQGSNHV
TYK20310.1 cytoplasmic tRNA 2-thiolation protein 1 isoform X2 [Cucumis melo var. makuwa]1.1e-1584.21Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        RHSNINVKVAVAACVSEI RI APNAPYSD +MKEVFHLIVSSFEN+S KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
XP_023537684.1 protein starmaker-like isoform X1 [Cucurbita pepo subsp. pepo]4.2e-1578.95Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
XP_038884574.1 titin homolog [Benincasa hispida]4.2e-1578.95Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
TrEMBL top hitse value%identityAlignment
A0A5A7TI13 Protein starmaker5.4e-1684.21Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        RHSNINVKVAVAACVSEI RI APNAPYSD +MKEVFHLIVSSFEN+S KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
A0A5D3DA09 Cytoplasmic tRNA 2-thiolation protein 1 isoform X25.4e-1684.21Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        RHSNINVKVAVAACVSEI RI APNAPYSD +MKEVFHLIVSSFEN+S KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
A0A6J1BTE1 uncharacterized protein DDB_G02844592.1e-1578.95Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
A0A6J1GHY4 ABC transporter F family member 4-like isoform X12.1e-1578.95Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
A0A6J1KIV6 protein starmaker-like isoform X12.1e-1578.95Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
SwissProt top hitse value%identityAlignment
Q04264 Sister chromatid cohesion protein PDS58.3e-0636.17Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENI
        +H ++ ++   A C+S+I+R+ AP+APY+D  + ++F L++S FE +
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENI
Arabidopsis top hitse value%identityAlignment
AT1G15940.1 Tudor/PWWP/MBT superfamily protein3.0e-1144.44Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRKGHPFLK
        R+ + +V+V+V +C++EI+RITAP APY+DE MK++F + + +FE ++  SS+S RK    L+
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRKGHPFLK
AT1G80810.1 Tudor/PWWP/MBT superfamily protein6.8e-1148.21Show/hide
Query:  HSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        H + +V+V+V +C++EI+RITAP  PYSD+ MKE+F L + +FE ++  SS+S +K
Subjt:  HSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
AT1G80810.2 Tudor/PWWP/MBT superfamily protein6.8e-1148.21Show/hide
Query:  HSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        H + +V+V+V +C++EI+RITAP  PYSD+ MKE+F L + +FE ++  SS+S +K
Subjt:  HSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
AT4G31880.1 LOCATED IN: cytosol, chloroplast7.0e-1668.42Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        +HS+++VKVAVAAC+SEI RITAP+APY D+ MKEVF LIVSSFE++  KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
AT4G31880.2 LOCATED IN: cytosol7.0e-1668.42Show/hide
Query:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK
        +HS+++VKVAVAAC+SEI RITAP+APY D+ MKEVF LIVSSFE++  KSS+S  K
Subjt:  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGCCTTGGTTTCTGGTCGACTTCTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAATTAGGATCACTGCACCTAATGCCCC
TTACAGTGACGAAAGTATGAAGGAGGTGTTTCATCTTATAGTATCATCCTTTGAAAATATCTCTTACAAGTCAAGTCAATCATTGCGAAAAGGGCATCCATTCTTGAAAC
TGTCGCAAGGGTCAAATCATGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATGCCTTGGTTTCTGGTCGACTTCTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAATTAGGATCACTGCACCTAATGCCCC
TTACAGTGACGAAAGTATGAAGGAGGTGTTTCATCTTATAGTATCATCCTTTGAAAATATCTCTTACAAGTCAAGTCAATCATTGCGAAAAGGGCATCCATTCTTGAAAC
TGTCGCAAGGGTCAAATCATGTGTAG
Protein sequenceShow/hide protein sequence
MECLGFWSTSRHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRKGHPFLKLSQGSNHV