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CSPI01G14880 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G14880
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationChr1:10537388..10537720
RNA-Seq ExpressionCSPI01G14880
SyntenyCSPI01G14880
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039633.1 uncharacterized protein E6C27_scaffold744G001140 [Cucumis melo var. makuwa]6.3e-3068.27Show/hide
Query:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD
        L+IW +NGILA SLS+ YVILH+I IANWFPSSHAS++S AL TFLY+I  +  +DA LFIY QLLRH+GTFGVKI + LPRFF S L+HL  DILT  D
Subjt:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD

Query:  APSP
        AP P
Subjt:  APSP

KAA0051794.1 uncharacterized protein E6C27_scaffold60G002030 [Cucumis melo var. makuwa]8.3e-3067.31Show/hide
Query:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD
        L+ W +NGI A +LS+KYVILH+IGIANWFPSSHASSVS  L TFLY I  +  +DA  FIY QLLRH+G+FGVK+P+ALPRFF S LLHL   +LT  D
Subjt:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD

Query:  APSP
        APSP
Subjt:  APSP

KAA0059849.1 uncharacterized protein E6C27_scaffold108G001320 [Cucumis melo var. makuwa]9.8e-3168.57Show/hide
Query:  MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNL
        +L+ WS+NGI AA+LS+KY ILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  FIY QLLRH+G+FGVK+P+ALPRFF   LLHL   ILT+ 
Subjt:  MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNL

Query:  DAPSP
        DAP P
Subjt:  DAPSP

TYK21447.1 uncharacterized protein E5676_scaffold609G001170 [Cucumis melo var. makuwa]8.3e-3067.31Show/hide
Query:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD
        L+ W +NGI A +LS+KYVILH+IGIANWFPSSHASSVS  L TFLY I  +  +DA  FIY QLLRH+G+FGVK+P+ALPRFF S LLHL   +LT  D
Subjt:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD

Query:  APSP
        APSP
Subjt:  APSP

XP_008466770.1 PREDICTED: uncharacterized protein LOC103504101 [Cucumis melo]9.8e-3168.57Show/hide
Query:  MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNL
        +L+ WS+NGI AA+LS+KY ILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  FIY QLLRH+G+FGVK+P+ALPRFF   LLHL   ILT+ 
Subjt:  MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNL

Query:  DAPSP
        DAP P
Subjt:  DAPSP

TrEMBL top hitse value%identityAlignment
A0A1S3CS20 uncharacterized protein LOC1035041014.7e-3168.57Show/hide
Query:  MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNL
        +L+ WS+NGI AA+LS+KY ILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  FIY QLLRH+G+FGVK+P+ALPRFF   LLHL   ILT+ 
Subjt:  MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNL

Query:  DAPSP
        DAP P
Subjt:  DAPSP

A0A5A7U8Y1 Reverse transcriptase Ty1/copia-type domain-containing protein4.0e-3067.31Show/hide
Query:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD
        L+ W +NGI A +LS+KYVILH+IGIANWFPSSHASSVS  L TFLY I  +  +DA  FIY QLLRH+G+FGVK+P+ALPRFF S LLHL   +LT  D
Subjt:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD

Query:  APSP
        APSP
Subjt:  APSP

A0A5D3B6A3 Uncharacterized protein3.1e-3068.27Show/hide
Query:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD
        L+IW +NGILA SLS+ YVILH+I IANWFPSSHAS++S AL TFLY+I  +  +DA LFIY QLLRH+GTFGVKI + LPRFF S L+HL  DILT  D
Subjt:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD

Query:  APSP
        AP P
Subjt:  APSP

A0A5D3DCR2 Reverse transcriptase Ty1/copia-type domain-containing protein4.0e-3067.31Show/hide
Query:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD
        L+ W +NGI A +LS+KYVILH+IGIANWFPSSHASSVS  L TFLY I  +  +DA  FIY QLLRH+G+FGVK+P+ALPRFF S LLHL   +LT  D
Subjt:  LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLD

Query:  APSP
        APSP
Subjt:  APSP

A0A5D3DMD7 Uncharacterized protein4.7e-3168.57Show/hide
Query:  MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNL
        +L+ WS+NGI AA+LS+KY ILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  FIY QLLRH+G+FGVK+P+ALPRFF   LLHL   ILT+ 
Subjt:  MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNL

Query:  DAPSP
        DAP P
Subjt:  DAPSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACAATATGGTCTATCAATGGAATTTTGGCTGCATCCTTGAGTTTAAAGTATGTCATTTTACACGAAATTGGAATTGCCAACTGGTTCCCCTCATCCCATGCATC
AAGTGTCTCTAATGCTCTTGCTACGTTTTTATATCGAATTAGTACTGAATTGACTTTGGATGCTAGGCTGTTTATTTACTTGCAGTTGTTAAGGCATATTGGTACGTTTG
GGGTAAAAATTCCACTCGCTCTTCCTCGGTTCTTCTTCAGTTTCTTGCTTCACTTACAACCTGATATTTTAACTAATCTTGATGCTCCGAGCCCAATCCATGCACCTTAT
TAT
mRNA sequenceShow/hide mRNA sequence
ATGCTTACAATATGGTCTATCAATGGAATTTTGGCTGCATCCTTGAGTTTAAAGTATGTCATTTTACACGAAATTGGAATTGCCAACTGGTTCCCCTCATCCCATGCATC
AAGTGTCTCTAATGCTCTTGCTACGTTTTTATATCGAATTAGTACTGAATTGACTTTGGATGCTAGGCTGTTTATTTACTTGCAGTTGTTAAGGCATATTGGTACGTTTG
GGGTAAAAATTCCACTCGCTCTTCCTCGGTTCTTCTTCAGTTTCTTGCTTCACTTACAACCTGATATTTTAACTAATCTTGATGCTCCGAGCCCAATCCATGCACCTTAT
TAT
Protein sequenceShow/hide protein sequence
MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSPIHAPY
Y