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CSPI01G15140 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G15140
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr1:10724899..10725135
RNA-Seq ExpressionCSPI01G15140
SyntenyCSPI01G15140
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059103.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.0e-1785.19Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

KAG7019344.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-1683.02Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQ
        L+GR+GQVEE EKLIMEME+EPD+ LWGA+LSACRIHGKA+VADRVQ RFMKQ
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQ

KGN64972.1 hypothetical protein Csa_022702 [Cucumis sativus]2.7e-3597.44Show/hide
Query:  MRGLGVAWKVFDGMHERNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        MRGLG AWKVFDGMH+RNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
Subjt:  MRGLGVAWKVFDGMHERNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

XP_004144516.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sativus]2.6e-1785.19Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        L+GR GQVEE EKLIMEME+EPD+ LWGAMLSACRIHGK DVADRVQKRF+KQQ
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

XP_008455480.1 PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo]2.0e-1785.19Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

TrEMBL top hitse value%identityAlignment
A0A0A0K1F7 Uncharacterized protein1.2e-1785.19Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        L+GR GQVEE EKLIMEME+EPD+ LWGAMLSACRIHGK DVADRVQKRF+KQQ
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

A0A0A0LVX2 Uncharacterized protein1.3e-3597.44Show/hide
Query:  MRGLGVAWKVFDGMHERNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        MRGLG AWKVFDGMH+RNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
Subjt:  MRGLGVAWKVFDGMHERNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

A0A1S3C0K0 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like9.5e-1885.19Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

A0A5A7UT42 Pentatricopeptide repeat-containing protein9.5e-1885.19Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        L+GRLGQVEE EKLIMEME+EPD+ LWGAMLSACRIHG+ DVADRVQKRF+KQQ
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

A0A6J1EHW3 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like2.3e-1681.13Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQ
        L+GR+GQVEE EKLIMEME+EPD+ LWGA+LSACRIHGK +VADRVQ RFMKQ
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQ

SwissProt top hitse value%identityAlignment
Q9FFG8 Pentatricopeptide repeat-containing protein At5g442301.2e-0650Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD
        L+GR G+++E  +LI  M VEP  G+WGA+L ACRIH   ++A+
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD

Q9LND4 Pentatricopeptide repeat-containing protein At1g06140, mitochondrial1.2e-0632.91Show/hide
Query:  WKVFDGM--------HERNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        WK F+ M         E +      L+GR G++ E +  I  M V+P    WGA+LSACRIH + D+A  + ++ +  +
Subjt:  WKVFDGM--------HERNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

Q9M9E2 Pentatricopeptide repeat-containing protein At1g15510, chloroplastic4.3e-0750Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD
        L+GR G+++E  K I +M V PD  +WGA+L+ACRIH K D+ +
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD

Q9STF3 Pentatricopeptide repeat-containing protein At3g46790, chloroplastic1.2e-0638.78Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR
        L+GR  +++E  K++ +M  EP   +WG++L +CRIHG  ++A+R  +R
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR

Q9SV26 Pentatricopeptide repeat-containing protein At4g01030, mitochondrial1.2e-0635.14Show/hide
Query:  WKVFDGMHERNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR
        WK FD M  R  ++ ++        L+GR G ++E    I  M ++PD  +WGA LS+C+IH   ++A+   KR
Subjt:  WKVFDGMHERNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR

Arabidopsis top hitse value%identityAlignment
AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein8.8e-0832.91Show/hide
Query:  WKVFDGM--------HERNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ
        WK F+ M         E +      L+GR G++ E +  I  M V+P    WGA+LSACRIH + D+A  + ++ +  +
Subjt:  WKVFDGM--------HERNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ

AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.0e-0850Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD
        L+GR G+++E  K I +M V PD  +WGA+L+ACRIH K D+ +
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD

AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.8e-0838.78Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR
        L+GR  +++E  K++ +M  EP   +WG++L +CRIHG  ++A+R  +R
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR

AT4G01030.1 pentatricopeptide (PPR) repeat-containing protein8.8e-0835.14Show/hide
Query:  WKVFDGMHERNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR
        WK FD M  R  ++ ++        L+GR G ++E    I  M ++PD  +WGA LS+C+IH   ++A+   KR
Subjt:  WKVFDGMHERNEVLRSV--------LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKR

AT5G44230.1 Pentatricopeptide repeat (PPR) superfamily protein8.8e-0850Show/hide
Query:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD
        L+GR G+++E  +LI  M VEP  G+WGA+L ACRIH   ++A+
Subjt:  LIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGGGATTAGGGGTTGCATGGAAGGTGTTTGATGGAATGCACGAGAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAA
GTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGT
TTATGAAACAACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGGGATTAGGGGTTGCATGGAAGGTGTTTGATGGAATGCACGAGAGGAATGAGGTGTTGCGATCGGTTTTGATTGGGAGATTGGGGCAAGTGGAAGAAGAAGAGAA
GTTGATAATGGAGATGGAGGTCGAGCCTGATAAGGGTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGCCGACGTTGCTGATAGGGTTCAAAAACGGT
TTATGAAACAACAATGA
Protein sequenceShow/hide protein sequence
MRGLGVAWKVFDGMHERNEVLRSVLIGRLGQVEEEEKLIMEMEVEPDKGLWGAMLSACRIHGKADVADRVQKRFMKQQ