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CSPI01G15960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G15960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTNFR/CD27/30/40/95 cysteine-rich region
Genome locationChr1:11477974..11478707
RNA-Seq ExpressionCSPI01G15960
SyntenyCSPI01G15960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573550.1 hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2971.11Show/hide
Query:  ITEVVILMTAVWLAVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSSSS
        IT  VILMTA+ L   CPA+ K+C DCIR+RM   CPACAPPLRCMAQCLWGG SRSRCV +CDSGGAWA L SCK+C+  CKC C+SSS
Subjt:  ITEVVILMTAVWLAVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSSSS

KAG6573554.1 hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2767.78Show/hide
Query:  ITEVVILMTAVWLAVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSSSS
        IT  VILMT + L   C A+ K+C DCIR+RM   CPACAPPLRCMAQCLWGG SRSRCV +CD GGAWA L SCK+C+  CKC C+SSS
Subjt:  ITEVVILMTAVWLAVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSSSS

KAG7012656.1 hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-2968.89Show/hide
Query:  ITEVVILMTAVWLAVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSSSS
        IT  VILMTA+ L   CP + K+C DCIR+RM   CPACAPPLRCMAQCLWGG SRSRCV +CD GGAWA L SCK+C+  CKC C+SSS
Subjt:  ITEVVILMTAVWLAVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSSSS

RVW58233.1 hypothetical protein CK203_111219 [Vitis vinifera]7.4e-2051.69Show/hide
Query:  VVILMTAVWL----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS
        V++L+   WL    A+GCP++G  C DCI N+M   CP+CAP LRCMA+CLWGG S+S+CV RCD  G    L+ CK+C+++CKC C +
Subjt:  VVILMTAVWL----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS

XP_010646205.1 PREDICTED: uncharacterized protein LOC104878123 [Vitis vinifera]7.4e-2051.69Show/hide
Query:  VVILMTAVWL----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS
        V++L+   WL    A+GCP++G  C DCI N+M   CP+CAP LRCMA+CLWGG S+S+CV RCD  G    L+ CK+C+++CKC C +
Subjt:  VVILMTAVWL----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS

TrEMBL top hitse value%identityAlignment
A0A0A0LW71 Uncharacterized protein3.2e-5398.1Show/hide
Query:  MAIRSLQITEVVILMTAVWLAVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSSSSFMS
        MAIRSLQITEVVILMTAVWL VGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKC+CSSSSFMS
Subjt:  MAIRSLQITEVVILMTAVWLAVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSSSSFMS

Query:  VQSVN
        VQSVN
Subjt:  VQSVN

A0A438FE46 Uncharacterized protein3.6e-2051.69Show/hide
Query:  VVILMTAVWL----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS
        V++L+   WL    A+GCP++G  C DCI N+M   CP+CAP LRCMA+CLWGG S+S+CV RCD  G    L+ CK+C+++CKC C +
Subjt:  VVILMTAVWL----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS

A0A6P3ZGK3 uncharacterized protein LOC1074149523.0e-1947.96Show/hide
Query:  MAIRSLQITEVVILMTAVWL-----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKC
        M  R   +  V +++  VWL     A GCP++G+ C  CI N+M+  CPACAP LRCMA+CLW G SR  C+ RCD GG    L+ CK+C+++CKC C
Subjt:  MAIRSLQITEVVILMTAVWL-----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKC

A5AHI4 Uncharacterized protein1.8e-1950.56Show/hide
Query:  VVILMTAVWL----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS
        V++L+   WL    A+GCP++G  C DCI N+M   CP+CAP L CMA+CLWGG S+S+CV RCD  G    L+ CK+C+++CKC C +
Subjt:  VVILMTAVWL----AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS

M1C6G3 TNFR/CD27/30/40/95 cysteine-rich region4.0e-1954.67Show/hide
Query:  AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS
        ++GCP +G  C +CI N ++ DCP CAP +RCMA+CLW G SRS+C+NRCD  G +  L+ CK C+++CKC CSS
Subjt:  AVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12064.1 unknown protein2.9e-1439.78Show/hide
Query:  VVILMTAVWLAVGC------PAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVN--RCDSGGAWASLASCKQCITKCKCKCSS
        +++L+ +   AVG       P     C  C+  +M+ DCP C P LRCMA+CLWGG ++ +C    RCD+  A  SL  CK+C+++CKC C++
Subjt:  VVILMTAVWLAVGC------PAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVN--RCDSGGAWASLASCKQCITKCKCKCSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATCAGATCATTACAAATCACGGAGGTGGTGATTCTGATGACCGCCGTCTGGTTGGCGGTGGGTTGCCCAGCGGAGGGCAAGGTGTGCGCCGACTGCATCAGGAA
CAGGATGGAGCAGGACTGCCCGGCGTGTGCTCCGCCCCTGCGTTGCATGGCACAGTGCCTTTGGGGCGGGGATTCGAGGTCGAGGTGCGTTAATCGGTGCGATTCCGGCG
GCGCGTGGGCGAGCTTGGCAAGCTGCAAGCAGTGCATAACCAAGTGCAAGTGCAAGTGCAGTTCTTCTTCTTTCATGAGCGTGCAATCGGTTAATTAA
mRNA sequenceShow/hide mRNA sequence
CATTGTTGATAATATTAGTAGCAGGTGATTATGGTGATTATGGCGATTACACGTTACAAAGAATTGAGTAAACCAAGAAATGCATGGACGGCTGACAACATTGGTTAACA
CAACATCCTTCAATTAATAATTAATACCACCTCCCAAGTTCTCAACCACCACCAATTCCTCCCAATTTCTCAATCTCTATTTATTTTCCTCTCAATATCAATCCACCAAG
AATTACTTCCACTTCCACACATGGCCATCAGATCATTACAAATCACGGAGGTGGTGATTCTGATGACCGCCGTCTGGTTGGCGGTGGGTTGCCCAGCGGAGGGCAAGGTG
TGCGCCGACTGCATCAGGAACAGGATGGAGCAGGACTGCCCGGCGTGTGCTCCGCCCCTGCGTTGCATGGCACAGTGCCTTTGGGGCGGGGATTCGAGGTCGAGGTGCGT
TAATCGGTGCGATTCCGGCGGCGCGTGGGCGAGCTTGGCAAGCTGCAAGCAGTGCATAACCAAGTGCAAGTGCAAGTGCAGTTCTTCTTCTTTCATGAGCGTGCAATCGG
TTAATTAAGAAGTTGGAGAGTGTGCTGTTTTGTAATCTTTCAAGTGGAGTACTTTGTAAAAGCAAATTTGAATCGTTTTATGCTGTCAGTTAAAGAGCAAATTTGAATAG
TTTGTGATGCCAGTGAACTGTACTTGATTCTTACTTTCAATTTTAGATTTAGATTTTGCCAATCTTAAAGCCAC
Protein sequenceShow/hide protein sequence
MAIRSLQITEVVILMTAVWLAVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCKCSSSSFMSVQSVN