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CSPI01G16530 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G16530
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr1:12071559..12072311
RNA-Seq ExpressionCSPI01G16530
SyntenyCSPI01G16530
Gene Ontology termsGO:0098869 - cellular oxidant detoxification (biological process)
GO:0031408 - oxylipin biosynthetic process (biological process)
GO:0030154 - cell differentiation (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0006633 - fatty acid biosynthetic process (biological process)
GO:0006914 - autophagy (biological process)
GO:0006979 - response to oxidative stress (biological process)
GO:0015074 - DNA integration (biological process)
GO:0009854 - oxidative photosynthetic carbon pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005777 - peroxisome (cellular component)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0020037 - heme binding (molecular function)
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (molecular function)
GO:0010181 - FMN binding (molecular function)
GO:0008289 - lipid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0004601 - peroxidase activity (molecular function)
GO:0003973 - (S)-2-hydroxy-acid oxidase activity (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042920.1 pol polyprotein [Cucumis melo var. makuwa]4.9e-1989.09Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIALDKA EEAEWLRNFLE I NWSKPVPAICIHSDSQA IGR RNIMYNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
KAF5959243.1 hypothetical protein HYC85_000452 [Camellia sinensis]1.0e-1680Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIALDKA EEAEWLR+FLEDIP W KPVPAICIH DSQ+ IGR +N MYNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
RVW67328.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.1e-1780Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIA+DKAREEA+WLRNFLEDIPNWSKPVPAICIH DSQ  IGR ++  YNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
RVW84500.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.0e-1780Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIA+DKA EEAEWLRNFLEDIPNWSKPVPAICIH DSQ  IGR ++  YNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
RVW87556.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.5e-1780Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIA+DKA EEAEWLRNFLEDIPNWSKPVPAICIH DSQ+ IGR ++  YNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
TrEMBL top hitse value%identityAlignment
A0A438G546 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-1780Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIA+DKAREEA+WLRNFLEDIPNWSKPVPAICIH DSQ  IGR ++  YNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
A0A438HJ39 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-1780Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIA+DKA EEAEWLRNFLEDIPNWSKPVPAICIH DSQ  IGR ++  YNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
A0A438HSX0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-1780Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIA+DKA EEAEWLRNFLEDIPNWSKPVPAICIH DSQ+ IGR ++  YNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
A0A5A7THY2 Pol polyprotein2.4e-1989.09Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIALDKA EEAEWLRNFLE I NWSKPVPAICIHSDSQA IGR RNIMYNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
A0A7J7I2I1 Cysteine protease5.0e-1780Show/hide
Query:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
        M+SEFIALDKA EEAEWLR+FLEDIP W KPVPAICIH DSQ+ IGR +N MYNG
Subjt:  MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTGAATTTATAGCCTTAGACAAGGCTAGAGAAGAAGCAGAATGGCTTCGAAATTTTTTGGAAGATATTCCCAATTGGTCTAAACCAGTGCCTGCAATATGTAT
ACATAGTGATAGCCAAGCAACTATTGGAAGGACACGAAATATTATGTATAATGGGGTCGCTTCTGTGAGAATTTTTAAGGCAACATTCTCTAAAACACTCATGAGACCAG
GCGGTGTTCAAGGCCAAAACGAACACAATATAATGAGAAGTTGTGTGATATCTATTGTTTTAGTTTACTCTAGGGCGGTTGACAGTTCAAGACATCATGTTCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCTGAATTTATAGCCTTAGACAAGGCTAGAGAAGAAGCAGAATGGCTTCGAAATTTTTTGGAAGATATTCCCAATTGGTCTAAACCAGTGCCTGCAATATGTAT
ACATAGTGATAGCCAAGCAACTATTGGAAGGACACGAAATATTATGTATAATGGGGTCGCTTCTGTGAGAATTTTTAAGGCAACATTCTCTAAAACACTCATGAGACCAG
GCGGTGTTCAAGGCCAAAACGAACACAATATAATGAGAAGTTGTGTGATATCTATTGTTTTAGTTTACTCTAGGGCGGTTGACAGTTCAAGACATCATGTTCACTGA
Protein sequenceShow/hide protein sequence
MKSEFIALDKAREEAEWLRNFLEDIPNWSKPVPAICIHSDSQATIGRTRNIMYNGVASVRIFKATFSKTLMRPGGVQGQNEHNIMRSCVISIVLVYSRAVDSSRHHVH