CuGenDBv2

Gene ID	CSPI01G16700
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CCR4-NOT transcription complex subunit 10
Genome location	Chr1:12302478..12304833
RNA-Seq Expression	CSPI01G16700
Synteny	CSPI01G16700
Gene Ontology terms	GO:0006402 - mRNA catabolic process (biological process) GO:0017148 - negative regulation of translation (biological process) GO:0030014 - CCR4-NOT complex (cellular component)
InterPro domains	IPR039740 - CCR4-NOT transcription complex subunit 10

Homology

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GenBank top hits

e value

%identity

Alignment

TYK06382.1 CCR4-NOT transcription complex subunit 10 [Cucumis melo var. makuwa]

1.1e-38

95.74

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MDARDSSSSSA NRD SSSAVEDDGALSITAALA+EAASLFQSGKY GCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

XP_004150203.1 CCR4-NOT transcription complex subunit 10 [Cucumis sativus]

5.4e-41

100

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

XP_008443951.1 PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis melo]

1.1e-38

95.74

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MDARDSSSSSA NRD SSSAVEDDGALSITAALA+EAASLFQSGKY GCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

XP_022965291.1 CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita maxima]

3.6e-37

90.43

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MDARDSSSS+  NRDGSSSAVEDDGA+ +TAALA+EAASLFQSGKY GCVEVLNQLLQKKEDDPKVLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

XP_038878790.1 CCR4-NOT transcription complex subunit 10 [Benincasa hispida]

3.3e-38

93.62

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MDARDSSSS+A NRDGSSSAVEDDG L+ITAALA+EAASLFQSGKY GCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWB8 Uncharacterized protein

7.3e-44

100

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH
        MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH

A0A1S3B976 CCR4-NOT transcription complex subunit 10

5.4e-39

95.74

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MDARDSSSSSA NRD SSSAVEDDGALSITAALA+EAASLFQSGKY GCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

A0A5A7U7H5 CCR4-NOT transcription complex subunit 10

5.4e-39

95.74

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MDARDSSSSSA NRD SSSAVEDDGALSITAALA+EAASLFQSGKY GCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

A0A5D3C558 CCR4-NOT transcription complex subunit 10

5.4e-39

95.74

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MDARDSSSSSA NRD SSSAVEDDGALSITAALA+EAASLFQSGKY GCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

A0A6J1HLA5 CCR4-NOT transcription complex subunit 10-like isoform X1

1.7e-37

90.43

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MDARDSSSS+  NRDGSSSAVEDDGA+ +TAALA+EAASLFQSGKY GCVEVLNQLLQKKEDDPKVLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G35430.1 Tetratricopeptide repeat (TPR)-like superfamily protein

3.0e-21

59.57

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Query:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
        MD+RDS SS A+ RD SS + +D   LS+T+ LA+ A S FQSGK+  C++VL QL Q K +DPKVLHN+AIAEY +DGCSN +KL+EVL  VK
Subjt:  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK

Sequences

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CDS sequence

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ATGGACGCTCGGGATTCATCTTCGTCCTCCGCCCTGAATCGGGATGGGTCCTCGTCGGCCGTTGAGGATGACGGTGCTTTATCCATCACCGCCGCTCTTGCTAGGGAGGC
TGCCTCGCTTTTTCAATCGGGGAAGTATGTTGGGTGTGTAGAGGTCTTGAACCAGCTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATTGCCATTGCCG
AATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTACTTGAAGTATTAAACAATGTGAAGGTATGCCATTAG

mRNA sequence

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ATAGTTTTTATTTAAGCTCACTTCATTCTCTTCGAAAAAACAACAAAAAAAAGACGCATTTCAGCAAAACACAAGAAACCAGGTGTCCTCCTTTCCAATTAATCCATACT
TTAGGGTTTCAAAAATCTTCAACTTCCATTGCTATCGAGCTTCTTCTTCTTCTTCTTCTCCTCCTCTTCGATTTCGTAGTTCAAAATCCCTCCCTTTACTACTTCTAATC
CCACTGAGAATTTTGAACTTCGAAATTTTAGGGCTTCGTTCTTCTCCCCTTATCCGTCCACTCATTTCCTTCTTTTTCCAACCTGGCCCTTGGTTTTGTTTCTTTTATTT
GGATCCGTTCATGGACGCTCGGGATTCATCTTCGTCCTCCGCCCTGAATCGGGATGGGTCCTCGTCGGCCGTTGAGGATGACGGTGCTTTATCCATCACCGCCGCTCTTG
CTAGGGAGGCTGCCTCGCTTTTTCAATCGGGGAAGTATGTTGGGTGTGTAGAGGTCTTGAACCAGCTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATT
GCCATTGCCGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTACTTGAAGTATTAAACAATGTGAAGGTATGCCATTAG

Protein sequence

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MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH

CSPI01G16700 (gene) of Cucumber (PI 183967) v1 genome