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CSPI01G16760 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G16760
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationChr1:12405192..12406719
RNA-Seq ExpressionCSPI01G16760
SyntenyCSPI01G16760
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443963.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo]2.5e-6293.6Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFVELRC
        MDDKSRIQHFGIRDGDQ+    L C
Subjt:  MDDKSRIQHFGIRDGDQLHFVELRC

XP_008443964.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo]1.6e-6997.67Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE
        MDDKSRIQHFGIRDGDQLHFVELRCP+EE
Subjt:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE

XP_011655436.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]6.6e-71100Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE
        MDDKSRIQHFGIRDGDQLHFVELRCPIEE
Subjt:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE

XP_023531556.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo]4.9e-5079.34Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFV
        +D+KSRI+ FGIRDGD LHFV
Subjt:  MDDKSRIQHFGIRDGDQLHFV

XP_038880358.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]6.7e-5587.29Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEP+VPDSCCISPRF SNSFRRS RY +LPPQL+RLSVLKLDGSSFEVQ+ RTATVAAVRDAVESVFC MSMNKED  ISWPHVWGHFCLCYKHFKL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQL
        +DDKSRI+HFGIRDGDQ+
Subjt:  MDDKSRIQHFGIRDGDQL

TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein3.2e-71100Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE
        MDDKSRIQHFGIRDGDQLHFVELRCPIEE
Subjt:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE

A0A1S3B9C0 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X11.2e-6293.6Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFVELRC
        MDDKSRIQHFGIRDGDQ+    L C
Subjt:  MDDKSRIQHFGIRDGDQLHFVELRC

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X27.9e-7097.67Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE
        MDDKSRIQHFGIRDGDQLHFVELRCP+EE
Subjt:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X27.9e-7097.67Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE
        MDDKSRIQHFGIRDGDQLHFVELRCP+EE
Subjt:  MDDKSRIQHFGIRDGDQLHFVELRCPIEE

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like9.1e-5078.51Show/hide
Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        M  IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFV
        +D+KSRI+ FGIRDGD LHFV
Subjt:  MDDKSRIQHFGIRDGDQLHFV

SwissProt top hitse value%identityAlignment
Q3ZBQ4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.3e-0528.89Show/hide
Query:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVE
        Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+ +++ +GIR+ D++ F++
Subjt:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVE

Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.2e-1141.86Show/hide
Query:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV
        +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL   + KL+DD + +Q  GIR+  Q+ F+
Subjt:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV

Q8VIK1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.0e-0528.89Show/hide
Query:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVE
        Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+ +++ +GIR+ D++ F++
Subjt:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVE

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein7.8e-0628.89Show/hide
Query:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVE
        Q + + V K+DG    V V ++ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+ +++ +GIR+ D++ F++
Subjt:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVE

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein9.3e-2348.31Show/hide
Query:  ISPRFHSN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDD
        I PRF S+         S RRS  Y +LPPQ  ++LSV+KL+GS F+V+V +  +VA ++ AVE VF    +      ISW HVWGHFCLCY+  +L++D
Subjt:  ISPRFHSN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDD

Query:  KSRIQHFGIRDGDQLHFV
        K+ I++ G+ DGDQLHFV
Subjt:  KSRIQHFGIRDGDQLHFV

AT3G07860.1 Ubiquitin-like superfamily protein8.8e-1341.86Show/hide
Query:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV
        +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL   + KL+DD + +Q  GIR+  Q+ F+
Subjt:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV

AT4G32270.1 Ubiquitin-like superfamily protein1.9e-2348.98Show/hide
Query:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV
        RRS  YN++P + ++L+VLKLDGSSF +QV +TATV  ++ AVE+ F  + ++     ISWPHVWG FCL Y+  +L+++   +  FGI+DGDQL F+
Subjt:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV

AT4G32270.2 Ubiquitin-like superfamily protein6.9e-1846.67Show/hide
Query:  LPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV
        +P + ++L+VLKLDGSSF   V +TATV  ++ AVE+ F  + ++     ISWPHVWG FCL Y+  +L+++   +  FGI+DGDQL F+
Subjt:  LPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV

AT5G25340.1 Ubiquitin-like superfamily protein3.0e-2148.45Show/hide
Query:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
        RR+  Y++LP + +RLSVLKLDGSSF+V V  +ATV  ++ A+E+ F  +   K    ISW HVWGHFCLC+   KL+ D   I ++G++DGD++ F
Subjt:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCACATTGAACCCATTGTCCCCGATTCTTGCTGTATTTCTCCTCGCTTTCATAGCAACAGTTTTCGCCGCTCTCTTCGCTATAATCGCCTTCCGCCCCAGCTCCT
CCGACTCTCCGTCTTGAAATTGGACGGTTCTTCTTTTGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGT
CGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTT
GGAATTCGTGATGGTGATCAGCTGCATTTTGTGGAATTGAGATGTCCCATAGAAGAATAA
mRNA sequenceShow/hide mRNA sequence
CAACCAACCAATTCCGGTGGTCTTTTCTGTCAAATTCTCTTTCACTCCCTCAATTTCTTCCCTGTTTTTCCAAACCCTAAACACTCTCTGCTCTTCAAATATTTCATTAC
TTTAATCTCAAATCCTCCACTATTATTCCTCAATATTCAATCTCATCATATTTATTCTTCATGTCTCACATTGAACCCATTGTCCCCGATTCTTGCTGTATTTCTCCTCG
CTTTCATAGCAACAGTTTTCGCCGCTCTCTTCGCTATAATCGCCTTCCGCCCCAGCTCCTCCGACTCTCCGTCTTGAAATTGGACGGTTCTTCTTTTGAGGTGCAAGTTG
AAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCAT
TTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGATCAGCTGCATTTTGTGGAATTGAGATGTCCCAT
AGAAGAATAAATAGATATGTGTAGAAAGAAATATAGAAAGATTGAAGAGATGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGCGTGAA
Protein sequenceShow/hide protein sequence
MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHF
GIRDGDQLHFVELRCPIEE