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CSPI01G16850 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G16850
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA-directed DNA polymerase
Genome locationChr1:12598004..12598174
RNA-Seq ExpressionCSPI01G16850
SyntenyCSPI01G16850
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]3.4e-1985.71Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH  AASPLH+LSAPW FSLWGMDVIGPIDPKASN   FILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
KAA0046905.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]4.0e-2087.5Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH  AASPLH+LSAPW FSLWGMDVIGPIDPKASN  HFILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
KAA0053326.1 hypothetical protein E6C27_scaffold27G00110 [Cucumis melo var. makuwa]2.0e-1985.71Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH AA  PLHVLSAPW FSLWGMD+IGPIDPKASN  HFILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
KAA0066097.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]3.4e-1985.71Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH  AASPLH+LSAPW FSLWGMDVIGPIDPKASN   FILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
TYK03243.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]4.0e-2087.5Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH  AASPLH+LSAPW FSLWGMDVIGPIDPKASN  HFILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H1.6e-1985.71Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH  AASPLH+LSAPW FSLWGMDVIGPIDPKASN   FILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
A0A5A7TZT7 Ribonuclease H1.9e-2087.5Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH  AASPLH+LSAPW FSLWGMDVIGPIDPKASN  HFILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
A0A5A7UGI2 Integrase catalytic domain-containing protein9.6e-2085.71Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH AA  PLHVLSAPW FSLWGMD+IGPIDPKASN  HFILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
A0A5A7VG92 Ribonuclease H1.6e-1985.71Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH  AASPLH+LSAPW FSLWGMDVIGPIDPKASN   FILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
A0A5D3BUA1 Ribonuclease H1.9e-2087.5Show/hide
Query:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
        CQIY DKIH  AASPLH+LSAPW FSLWGMDVIGPIDPKASN  HFILVAIDYFTK
Subjt:  CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTCAAATTTATACGGATAAGATTCATGCAGCAGCAGCATCTCCATTGCATGTCTTGTCAGCACCATGGTCGTTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGA
TCCTAAAGCCTCAAATGATCAACATTTTATTCTTGTGGCGATTGATTACTTCACTAAATGA
mRNA sequenceShow/hide mRNA sequence
TGTCAAATTTATACGGATAAGATTCATGCAGCAGCAGCATCTCCATTGCATGTCTTGTCAGCACCATGGTCGTTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGA
TCCTAAAGCCTCAAATGATCAACATTTTATTCTTGTGGCGATTGATTACTTCACTAAATGA
Protein sequenceShow/hide protein sequence
CQIYTDKIHAAAASPLHVLSAPWSFSLWGMDVIGPIDPKASNDQHFILVAIDYFTK